Wall clock time and date at job start Tue Mar 31 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99658 * 2 1 4 4 H 1.48502 * 109.47427 * 269.99699 * 3 2 1 5 5 H 1.48497 * 109.47618 * 30.00124 * 3 2 1 6 6 H 1.48507 * 109.47015 * 149.99754 * 3 2 1 7 7 C 1.37871 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00001 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99973 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47403 * 179.97438 * 9 7 2 11 11 C 1.46952 * 111.00146 * 169.99618 * 10 9 7 12 12 C 1.53058 * 109.36414 * 183.18846 * 11 10 9 13 13 N 1.46961 * 109.36200 * 301.60054 * 12 11 10 14 14 C 1.46906 * 110.99523 * 183.18976 * 13 12 11 15 15 C 1.50699 * 109.46704 * 170.00464 * 14 13 12 16 16 C 1.33616 * 125.12582 * 89.99680 * 15 14 13 17 17 C 1.37968 * 115.06466 * 180.02562 * 16 15 14 18 18 C 1.34790 * 114.70482 * 359.97438 * 17 16 15 19 19 C 1.47832 * 125.27060 * 179.97438 * 18 17 16 20 20 C 1.39600 * 120.12904 * 0.25978 * 19 18 17 21 21 C 1.37953 * 119.90635 * 180.25426 * 20 19 18 22 22 C 1.38338 * 120.16644 * 359.73773 * 21 20 19 23 23 C 1.38554 * 120.26726 * 0.02562 * 22 21 20 24 24 F 1.35103 * 119.95201 * 180.02562 * 23 22 21 25 25 C 1.38210 * 120.09645 * 359.97438 * 23 22 21 26 26 S 1.75864 * 125.11550 * 270.32170 * 15 14 13 27 27 C 1.46958 * 110.88044 * 59.32267 * 13 12 11 28 28 C 1.46962 * 111.00039 * 293.79822 * 10 9 7 29 29 H 0.97006 * 120.00202 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47214 * 59.99693 * 9 7 2 31 31 H 1.08996 * 109.47022 * 299.99744 * 9 7 2 32 32 H 1.08998 * 109.49005 * 63.22681 * 11 10 9 33 33 H 1.08993 * 109.49143 * 303.15586 * 11 10 9 34 34 H 1.08999 * 109.49197 * 181.63561 * 12 11 10 35 35 H 1.08997 * 109.48696 * 61.56469 * 12 11 10 36 36 H 1.08993 * 109.47213 * 49.99710 * 14 13 12 37 37 H 1.09007 * 109.46672 * 289.99567 * 14 13 12 38 38 H 1.07998 * 122.46414 * 359.97438 * 16 15 14 39 39 H 1.07992 * 122.64548 * 180.02562 * 17 16 15 40 40 H 1.08010 * 120.04981 * 359.97438 * 20 19 18 41 41 H 1.07994 * 119.91654 * 179.72650 * 21 20 19 42 42 H 1.08000 * 119.86509 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.08557 * 179.97438 * 25 23 22 44 44 H 1.08994 * 109.48830 * 60.64516 * 27 13 12 45 45 H 1.08999 * 109.48472 * 180.71295 * 27 13 12 46 46 H 1.09001 * 109.48563 * 296.77897 * 28 10 9 47 47 H 1.09006 * 109.48841 * 56.84178 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 5.4507 -2.6250 -0.2378 12 6 5.9071 -4.0842 -0.3096 13 7 5.5602 -4.7655 0.9455 14 6 6.0500 -6.1505 0.9453 15 6 5.8973 -6.7373 2.3249 16 6 4.8189 -7.3904 2.7676 17 6 4.9018 -7.8409 4.0690 18 6 6.0612 -7.5516 4.6926 19 6 6.3974 -7.9209 6.0840 20 6 5.4810 -8.6314 6.8613 21 6 5.7974 -8.9691 8.1609 22 6 7.0225 -8.6101 8.6938 23 6 7.9393 -7.9091 7.9271 24 9 9.1340 -7.5622 8.4538 25 6 7.6337 -7.5652 6.6238 26 16 7.1086 -6.6586 3.5975 27 6 4.1107 -4.7194 1.1832 28 6 3.6544 -3.2603 1.2550 29 1 -0.4851 0.8401 -0.0004 30 1 3.8745 -0.6807 0.8904 31 1 3.8752 -0.6796 -0.8894 32 1 5.9693 -2.1216 0.5781 33 1 5.6810 -2.1253 -1.1787 34 1 6.9865 -4.1208 -0.4570 35 1 5.4089 -4.5804 -1.1425 36 1 7.1015 -6.1640 0.6589 37 1 5.4719 -6.7401 0.2337 38 1 3.9464 -7.5529 2.1522 39 1 4.1012 -8.3833 4.5498 40 1 4.5238 -8.9125 6.4473 41 1 5.0869 -9.5149 8.7638 42 1 7.2650 -8.8766 9.7120 43 1 8.3482 -7.0184 6.0264 44 1 3.5923 -5.2229 0.3673 45 1 3.8805 -5.2191 2.1241 46 1 4.1525 -2.7640 2.0879 47 1 2.5750 -3.2237 1.4024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040086141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:43 Heat of formation + Delta-G solvation = 11.214049 kcal Electronic energy + Delta-G solvation = -28234.184217 eV Core-core repulsion = 24229.171478 eV Total energy + Delta-G solvation = -4005.012739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.97140 -40.44875 -40.11593 -38.56515 -36.68078 -34.63806 -33.37312 -31.90293 -31.71174 -31.16508 -29.49720 -27.43132 -25.71453 -24.68124 -24.06963 -23.49759 -23.00077 -22.76962 -20.70225 -20.02181 -18.96262 -18.63082 -17.72455 -17.30975 -17.19533 -16.86700 -16.67397 -16.40893 -16.31170 -15.92846 -15.88772 -15.46629 -15.27798 -15.00135 -14.79445 -14.47833 -14.28958 -14.27765 -14.13196 -13.78339 -13.43007 -13.29032 -13.10284 -12.96740 -12.86365 -12.76115 -12.54058 -12.34437 -12.21556 -12.16110 -11.99042 -11.83628 -11.63899 -11.51849 -11.34389 -10.79074 -10.63858 -9.88779 -9.44464 -9.38802 -9.06621 -8.93299 -8.29530 -6.32791 -0.61065 0.14513 0.54763 0.61507 1.03031 1.33541 1.35135 1.45749 1.78033 2.33167 2.67334 2.98204 3.03134 3.10984 3.20882 3.55676 3.75142 3.81552 3.96798 4.04762 4.08279 4.13724 4.18459 4.29609 4.33432 4.44071 4.47292 4.49584 4.59158 4.64762 4.70447 4.76447 4.80279 4.86369 4.95334 4.98645 4.99534 5.05155 5.09353 5.10849 5.15959 5.24332 5.31757 5.41277 5.51401 5.55280 5.84279 5.89735 5.99587 6.07913 6.34360 6.63625 6.72734 7.30795 8.86846 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.001950 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.651983 B =14354.885395 C =14928.396873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.515 4.515 8 H 0.039 0.961 9 C 0.172 3.828 10 N -0.543 5.543 11 C 0.051 3.949 12 C 0.068 3.932 13 N -0.544 5.544 14 C 0.125 3.875 15 C -0.166 4.166 16 C -0.140 4.140 17 C -0.113 4.113 18 C -0.171 4.171 19 C 0.006 3.994 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.155 4.155 23 C 0.085 3.915 24 F -0.149 7.149 25 C -0.167 4.167 26 S 0.127 5.873 27 C 0.073 3.927 28 C 0.071 3.929 29 H 0.267 0.733 30 H -0.018 1.018 31 H 0.030 0.970 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.128 0.872 44 H 0.037 0.963 45 H 0.086 0.914 46 H 0.018 0.982 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.125 -22.062 13.118 30.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.045 3.955 10 N -0.268 5.268 11 C -0.077 4.077 12 C -0.059 4.059 13 N -0.269 5.269 14 C -0.004 4.004 15 C -0.284 4.284 16 C -0.171 4.171 17 C -0.143 4.143 18 C -0.288 4.288 19 C 0.004 3.996 20 C -0.136 4.136 21 C -0.095 4.095 22 C -0.174 4.174 23 C 0.066 3.934 24 F -0.127 7.127 25 C -0.187 4.187 26 S 0.395 5.605 27 C -0.056 4.056 28 C -0.057 4.057 29 H 0.076 0.924 30 H 0.000 1.000 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.061 0.939 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.188 0.812 42 H 0.175 0.825 43 H 0.146 0.854 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.517 -21.277 13.180 31.134 hybrid contribution -1.309 0.710 -0.124 1.494 sum 17.208 -20.567 13.056 29.826 Atomic orbital electron populations 1.70045 1.08021 1.28104 1.52537 1.25831 0.95626 1.03074 0.94389 0.85722 0.79191 0.78738 0.79326 1.18748 1.20694 1.17945 1.21227 0.90945 0.93269 1.49886 0.94298 1.19914 0.94374 0.86401 0.94825 1.62044 1.13191 1.16973 1.34550 1.22251 0.87460 0.97264 1.00748 1.22135 1.01341 0.92736 0.89708 1.62162 1.14007 1.15362 1.35380 1.20564 1.02051 0.87532 0.90242 1.24594 0.98436 1.05267 1.00124 1.20247 0.99240 1.01035 0.96529 1.20504 0.97589 1.01889 0.94346 1.23030 0.99811 1.08445 0.97533 1.17962 0.93494 0.97603 0.90527 1.21607 0.99941 0.97699 0.94321 1.21356 0.95784 0.97588 0.94769 1.21556 0.94232 0.99920 1.01685 1.17764 0.82399 1.00566 0.92638 1.91487 1.44039 1.90581 1.86643 1.21216 0.98212 1.04247 0.95032 1.84165 1.19174 1.53472 1.03668 1.22062 0.87331 0.95035 1.01131 1.21923 0.99742 0.94231 0.89832 0.92403 0.99990 0.95147 0.95446 0.89848 0.87810 0.93865 0.88231 0.91626 0.83133 0.81811 0.82788 0.81156 0.82521 0.85448 0.94436 0.89568 0.96369 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.42 6.54 99.48 0.65 -10.77 16 7 C -0.51 -30.12 9.03 25.60 0.23 -29.89 16 8 H 0.04 2.53 7.37 -2.91 -0.02 2.50 16 9 C 0.17 8.43 3.79 85.56 0.32 8.75 16 10 N -0.54 -22.81 4.70 -900.30 -4.23 -27.04 16 11 C 0.05 1.67 5.61 86.31 0.48 2.16 16 12 C 0.07 1.75 5.61 86.31 0.48 2.23 16 13 N -0.54 -14.20 4.70 -900.26 -4.23 -18.43 16 14 C 0.12 2.49 5.45 85.56 0.47 2.96 16 15 C -0.17 -3.40 5.45 24.64 0.13 -3.26 16 16 C -0.14 -2.65 8.50 21.16 0.18 -2.47 16 17 C -0.11 -1.96 9.65 21.41 0.21 -1.75 16 18 C -0.17 -3.31 6.37 24.02 0.15 -3.16 16 19 C 0.01 0.11 5.87 -20.10 -0.12 -0.01 16 20 C -0.12 -1.48 9.54 22.53 0.21 -1.27 16 21 C -0.08 -0.77 10.03 22.23 0.22 -0.54 16 22 C -0.16 -1.97 10.02 22.37 0.22 -1.75 16 23 C 0.09 1.55 7.29 22.34 0.16 1.71 16 24 F -0.15 -3.03 17.26 44.97 0.78 -2.25 16 25 C -0.17 -3.23 9.58 22.57 0.22 -3.01 16 26 S 0.13 2.61 22.24 -56.49 -1.26 1.35 16 27 C 0.07 2.21 5.36 86.31 0.46 2.67 16 28 C 0.07 2.84 5.43 86.31 0.47 3.31 16 29 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 30 H -0.02 -0.88 7.18 -2.39 -0.02 -0.89 16 31 H 0.03 1.45 7.45 -2.39 -0.02 1.43 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 34 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.67 8.03 -2.39 -0.02 1.66 16 37 H 0.07 1.21 8.12 -2.38 -0.02 1.19 16 38 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.16 1.96 6.89 -2.91 -0.02 1.94 16 40 H 0.15 1.27 6.76 -2.91 -0.02 1.25 16 41 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.13 2.49 7.28 -2.91 -0.02 2.46 16 44 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 2.43 6.12 -2.39 -0.01 2.42 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 2.68 6.79 -2.38 -0.02 2.66 16 Total: -1.00 -70.51 392.31 -0.86 -71.37 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.92 Total: 10.07 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 4.98 Total: -22.38 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -8.16 Total: -104.60 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.26 Total: 1.35 kcal Total: -70.51 -0.86 -71.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040086141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.583 kcal (2) G-P(sol) polarization free energy of solvation -70.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds