Wall clock time and date at job start Tue Mar 31 2020 05:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47285 * 2 1 4 4 N 1.29850 * 125.73269 * 269.99521 * 3 2 1 5 5 O 1.41678 * 107.93588 * 180.02562 * 4 3 2 6 6 N 1.41698 * 107.46037 * 359.76371 * 5 4 3 7 7 C 1.30548 * 107.69358 * 0.40591 * 6 5 4 8 8 N 1.39365 * 125.81008 * 179.86323 * 7 6 5 9 9 C 1.34770 * 119.99875 * 359.68719 * 8 7 6 10 10 O 1.21733 * 120.00536 * 0.02562 * 9 8 7 11 11 C 1.46194 * 120.00097 * 180.02562 * 9 8 7 12 12 C 1.35065 * 120.00298 * 180.02562 * 11 9 8 13 13 C 1.46957 * 119.99868 * 179.97438 * 12 11 9 14 14 C 1.40032 * 120.08024 * 0.02562 * 13 12 11 15 15 C 1.37639 * 120.00236 * 179.97438 * 14 13 12 16 16 C 1.39067 * 120.15698 * 0.25524 * 15 14 13 17 17 O 1.35616 * 119.91627 * 179.72688 * 16 15 14 18 18 C 1.34760 * 117.00259 * 354.37201 * 17 16 15 19 19 H 1.07996 * 119.99703 * 5.07244 * 18 17 16 20 20 C 1.38709 * 119.99834 * 185.06532 * 18 17 16 21 21 N 1.31515 * 120.00219 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99630 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47544 * 60.00212 * 22 20 18 24 24 H 1.48499 * 109.47072 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47112 * 299.99794 * 22 20 18 26 26 C 1.39622 * 120.16219 * 359.48515 * 16 15 14 27 27 O 1.35949 * 120.00221 * 180.27975 * 26 16 15 28 28 C 1.42906 * 116.99839 * 180.23656 * 27 26 16 29 29 C 1.38082 * 119.99490 * 0.51701 * 26 16 15 30 30 H 1.08997 * 109.46761 * 59.99758 * 1 2 3 31 31 H 1.08994 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46494 * 300.00367 * 1 2 3 33 33 H 1.08998 * 109.47343 * 239.99798 * 2 1 3 34 34 H 1.09009 * 109.47100 * 120.00032 * 2 1 3 35 35 H 0.97000 * 119.99632 * 179.69764 * 8 7 6 36 36 H 1.08001 * 119.99984 * 0.02562 * 11 9 8 37 37 H 1.08001 * 119.99718 * 0.02562 * 12 11 9 38 38 H 1.08004 * 119.99968 * 359.97438 * 14 13 12 39 39 H 1.08001 * 119.92615 * 179.97438 * 15 14 13 40 40 H 0.97001 * 119.99892 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47187 * 180.02562 * 28 27 26 42 42 H 1.09007 * 109.46652 * 299.99809 * 28 27 26 43 43 H 1.08997 * 109.47211 * 60.00039 * 28 27 26 44 44 H 1.07996 * 120.07790 * 179.72398 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2852 2.1357 -1.0541 5 8 2.7355 3.4073 -0.6210 6 7 2.7277 3.4013 0.7959 7 6 2.3173 2.2247 1.1854 8 7 2.1704 1.8088 2.5074 9 6 2.4689 2.6514 3.5160 10 8 2.8665 3.7759 3.2724 11 6 2.3153 2.2150 4.9028 12 6 2.6140 3.0595 5.9136 13 6 2.4591 2.6209 7.3076 14 6 2.0023 1.3276 7.5898 15 6 1.8583 0.9183 8.8960 16 6 2.1603 1.7882 9.9381 17 8 2.0113 1.3817 11.2233 18 6 1.4581 0.1689 11.4212 19 1 1.2315 -0.4654 10.5770 20 6 1.1799 -0.2646 12.7091 21 7 1.4555 0.5080 13.7370 22 14 0.4137 -1.9460 12.9833 23 1 1.3128 -2.9947 12.4382 24 1 0.2173 -2.1691 14.4383 25 1 -0.8988 -2.0107 12.2916 26 6 2.6213 3.0774 9.6645 27 8 2.9210 3.9233 10.6857 28 6 3.3825 5.2289 10.3326 29 6 2.7682 3.4949 8.3565 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 1.8534 0.9129 2.7015 36 1 1.9630 1.2172 5.1190 37 1 2.9660 4.0574 5.6974 38 1 1.7631 0.6512 6.7825 39 1 1.5056 -0.0793 9.1123 40 1 1.2606 0.2049 14.6376 41 1 3.5854 5.7999 11.2386 42 1 4.2964 5.1444 9.7444 43 1 2.6182 5.7379 9.7454 44 1 3.1204 4.4933 8.1433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040114453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:08 Heat of formation + Delta-G solvation = 39.516014 kcal Electronic energy + Delta-G solvation = -29868.794734 eV Core-core repulsion = 25371.769167 eV Total energy + Delta-G solvation = -4497.025567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.64730 -39.96562 -39.69333 -37.78835 -36.75490 -35.90129 -35.02219 -33.28265 -32.45756 -31.69100 -31.50871 -29.85819 -28.81808 -26.76489 -25.81605 -25.36893 -24.55916 -22.77459 -21.86826 -21.28872 -20.84330 -19.59244 -18.40562 -18.25396 -17.92960 -17.04704 -16.53081 -16.29052 -15.96855 -15.52366 -15.29322 -15.21307 -15.00797 -14.84114 -14.59027 -14.46803 -14.09961 -13.95089 -13.71141 -13.56718 -13.47996 -12.82695 -12.55808 -12.33746 -12.29141 -12.27708 -11.91076 -11.86890 -11.82776 -11.63477 -11.58352 -11.18319 -11.16872 -11.03495 -10.88708 -10.82243 -10.61675 -10.24877 -9.72102 -9.65853 -9.51081 -8.96707 -8.10550 -7.04924 -6.73330 -4.23484 0.34475 0.75420 1.61896 1.89299 2.01234 2.38993 2.58749 2.85598 2.97546 2.99001 3.02680 3.29025 3.69507 3.73548 3.85715 4.30819 4.34167 4.38476 4.50384 4.65056 4.78881 4.89967 4.96364 5.03152 5.04619 5.20277 5.28883 5.34363 5.42660 5.45932 5.48208 5.56035 5.57504 5.74897 5.77113 5.86046 6.07392 6.14271 6.32805 6.40405 6.49801 6.71380 6.86665 6.96382 7.05014 7.12152 7.35506 7.66799 7.79508 7.97886 8.69010 9.36744 10.41812 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.001875 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.559084 B =14932.153852 C =17028.222482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.061 4.061 3 C 0.081 3.919 4 N -0.271 5.271 5 O 0.017 5.983 6 N -0.270 5.270 7 C 0.295 3.705 8 N -0.632 5.632 9 C 0.550 3.450 10 O -0.500 6.500 11 C -0.291 4.291 12 C 0.058 3.942 13 C -0.177 4.177 14 C -0.053 4.053 15 C -0.228 4.228 16 C 0.150 3.850 17 O -0.142 6.142 18 C -0.390 4.390 19 H 0.099 0.901 20 C 0.042 3.958 21 N -0.840 5.840 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.267 1.267 26 C 0.052 3.948 27 O -0.303 6.303 28 C 0.030 3.970 29 C -0.133 4.133 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.426 0.574 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.277 0.723 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -3.514 -18.640 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 C -0.107 4.107 4 N -0.014 5.014 5 O -0.116 6.116 6 N -0.027 5.027 7 C 0.021 3.979 8 N -0.287 5.287 9 C 0.344 3.656 10 O -0.373 6.373 11 C -0.312 4.312 12 C 0.038 3.962 13 C -0.178 4.178 14 C -0.071 4.071 15 C -0.247 4.247 16 C 0.093 3.907 17 O -0.042 6.042 18 C -0.465 4.465 19 H 0.116 0.884 20 C -0.166 4.166 21 N -0.471 5.471 22 Si 0.770 3.230 23 H -0.191 1.191 24 H -0.200 1.200 25 H -0.191 1.191 26 C 0.007 3.993 27 O -0.217 6.217 28 C -0.066 4.066 29 C -0.152 4.152 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.265 0.735 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.702 -1.466 -18.888 18.957 hybrid contribution -0.630 -1.662 0.474 1.839 sum -1.332 -3.127 -18.413 18.724 Atomic orbital electron populations 1.21797 0.92494 1.03532 1.03220 1.20380 0.97515 0.86391 1.05630 1.25704 0.98066 0.99414 0.87545 1.79669 1.09638 0.92790 1.19329 1.93360 1.78394 1.25897 1.13959 1.80760 1.18886 1.13893 0.89133 1.22805 0.96535 0.90900 0.87684 1.43181 1.66402 1.18875 1.00280 1.18833 0.76623 0.84420 0.85744 1.90938 1.42987 1.18992 1.84350 1.22116 1.17003 1.02945 0.89141 1.22312 0.85371 0.97456 0.91049 1.18087 1.13182 0.95576 0.90945 1.20927 0.96105 0.94307 0.95756 1.20822 1.11179 1.01234 0.91487 1.18909 0.95479 0.90156 0.86191 1.83984 1.66045 1.34561 1.19586 1.21518 1.39872 0.90883 0.94255 0.88383 1.25458 0.96730 1.00277 0.94140 1.70032 1.41346 1.36444 0.99267 0.85687 0.79513 0.79539 0.78249 1.19139 1.20005 1.19139 1.18042 1.05231 0.89214 0.86826 1.86239 1.81343 1.23191 1.30929 1.22933 0.98314 0.83313 1.02057 1.20885 1.04116 0.99662 0.90560 0.91755 0.90391 0.91829 0.88112 0.88418 0.73475 0.85001 0.85753 0.86494 0.84418 0.91334 0.88893 0.93396 0.93373 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 37.16 0.37 -0.16 16 2 C -0.06 -0.24 6.42 -27.88 -0.18 -0.42 16 3 C 0.08 0.70 6.65 -80.31 -0.53 0.16 16 4 N -0.27 -3.13 12.94 34.81 0.45 -2.68 16 5 O 0.02 0.24 13.64 12.21 0.17 0.41 16 6 N -0.27 -4.08 11.15 32.40 0.36 -3.72 16 7 C 0.30 3.31 7.96 -153.42 -1.22 2.09 16 8 N -0.63 -5.74 5.41 -11.28 -0.06 -5.80 16 9 C 0.55 6.94 7.70 -13.07 -0.10 6.84 16 10 O -0.50 -8.46 14.92 5.16 0.08 -8.38 16 11 C -0.29 -3.33 9.40 -37.52 -0.35 -3.68 16 12 C 0.06 0.78 9.45 -37.18 -0.35 0.43 16 13 C -0.18 -2.76 5.87 -105.04 -0.62 -3.37 16 14 C -0.05 -0.82 9.40 -39.13 -0.37 -1.19 16 15 C -0.23 -4.33 9.14 -39.49 -0.36 -4.69 16 16 C 0.15 3.38 6.67 -38.76 -0.26 3.12 16 17 O -0.14 -3.80 9.52 -13.95 -0.13 -3.93 16 18 C -0.39 -9.96 9.48 30.91 0.29 -9.66 16 19 H 0.10 2.23 5.18 -52.49 -0.27 1.96 16 20 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 21 N -0.84 -22.98 13.67 55.48 0.76 -22.22 16 22 Si 0.95 18.56 29.55 -169.99 -5.02 13.54 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 C 0.05 1.05 6.70 -39.12 -0.26 0.79 16 27 O -0.30 -6.18 10.28 -34.19 -0.35 -6.53 16 28 C 0.03 0.41 9.81 101.05 0.99 1.41 16 29 C -0.13 -2.23 8.77 -38.99 -0.34 -2.57 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.14 7.80 -51.92 -0.40 -0.26 16 35 H 0.43 1.91 8.35 -40.82 -0.34 1.57 16 36 H 0.13 1.16 6.06 -52.49 -0.32 0.84 16 37 H 0.12 1.68 7.52 -52.49 -0.39 1.28 16 38 H 0.12 1.40 6.15 -52.48 -0.32 1.08 16 39 H 0.14 2.53 5.62 -52.49 -0.29 2.23 16 40 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.59 7.66 -51.92 -0.40 0.19 16 43 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 44 H 0.12 1.75 6.28 -52.49 -0.33 1.42 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -34.51 388.52 -6.01 -40.53 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.72 Total: 2.87 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.39 Total: -9.95 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 1.51 Total: -34.41 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.24 Total: -18.43 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.51 -6.01 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040114453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.045 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds