Wall clock time and date at job start Tue Mar 31 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38257 * 119.99598 * 2 1 4 4 C 1.38217 * 119.99813 * 180.28309 * 3 2 1 5 5 C 1.38262 * 119.99638 * 359.46216 * 4 3 2 6 6 C 1.50698 * 119.99875 * 180.30125 * 5 4 3 7 7 C 1.38216 * 120.00047 * 0.53827 * 5 4 3 8 8 S 1.76198 * 119.99827 * 179.76042 * 7 5 4 9 9 O 1.42103 * 106.39973 * 48.11968 * 8 7 5 10 10 O 1.42094 * 106.39955 * 181.03252 * 8 7 5 11 11 N 1.65600 * 107.22252 * 294.57760 * 8 7 5 12 12 C 1.46502 * 119.99574 * 277.55391 * 11 8 7 13 13 C 1.50700 * 109.47121 * 95.00015 * 12 11 8 14 14 H 1.08000 * 119.99759 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99758 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00302 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99719 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47046 * 119.99672 * 17 15 13 20 20 H 1.48495 * 109.47103 * 240.00101 * 17 15 13 21 21 C 1.46496 * 119.99805 * 97.54927 * 11 8 7 22 22 C 1.50707 * 109.46955 * 100.00362 * 21 11 8 23 23 C 1.38680 * 120.41330 * 269.71709 * 22 21 11 24 24 C 1.38622 * 118.41557 * 179.78133 * 23 22 21 25 25 C 1.38233 * 119.16401 * 0.51454 * 24 23 22 26 26 N 1.31857 * 120.75908 * 359.72482 * 25 24 23 27 27 C 1.31879 * 121.72583 * 0.02562 * 26 25 24 28 28 C 1.38210 * 119.99911 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47155 * 90.00005 * 1 2 3 30 30 H 1.09002 * 109.46695 * 209.99746 * 1 2 3 31 31 H 1.08996 * 109.46750 * 329.99704 * 1 2 3 32 32 H 1.07994 * 120.00178 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.00377 * 179.72347 * 4 3 2 34 34 H 1.08999 * 109.47198 * 263.82467 * 6 5 4 35 35 H 1.09003 * 109.47055 * 23.82380 * 6 5 4 36 36 H 1.09002 * 109.47129 * 143.82540 * 6 5 4 37 37 H 1.08999 * 109.46690 * 214.99498 * 12 11 8 38 38 H 1.08996 * 109.47293 * 334.99914 * 12 11 8 39 39 H 0.96997 * 120.00280 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47202 * 219.99835 * 21 11 8 41 41 H 1.08997 * 109.47240 * 340.00027 * 21 11 8 42 42 H 1.07998 * 120.78962 * 0.02701 * 23 22 21 43 43 H 1.08001 * 120.41773 * 180.21784 * 24 23 22 44 44 H 1.07994 * 119.61780 * 179.74698 * 25 24 23 45 45 H 1.08000 * 119.61302 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.00537 * 359.97432 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 -0.0059 5 6 4.2717 0.0001 -0.0006 6 6 5.7787 0.0001 -0.0002 7 6 3.5807 -1.1969 -0.0006 8 16 4.4618 -2.7228 -0.0002 9 8 5.4502 -2.6150 1.0150 10 8 3.4821 -3.7517 -0.0249 11 7 5.2770 -2.8186 -1.4384 12 6 4.5853 -3.2848 -2.6428 13 6 4.0783 -2.0986 -3.4218 14 1 4.2535 -1.0976 -3.0561 15 6 3.3909 -2.2913 -4.6014 16 7 3.1780 -3.5102 -5.0469 17 14 2.7619 -0.8209 -5.5667 18 1 3.1295 0.4309 -4.8575 19 1 3.3722 -0.8197 -6.9205 20 1 1.2844 -0.9049 -5.6898 21 6 6.6898 -2.4371 -1.5064 22 6 7.5469 -3.6763 -1.4733 23 6 7.9921 -4.1899 -0.2645 24 6 8.7743 -5.3342 -0.2820 25 6 9.0912 -5.9151 -1.4957 26 7 8.6541 -5.3960 -2.6262 27 6 7.9041 -4.3115 -2.6472 28 6 2.1981 -1.1969 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1327 -0.0104 34 1 6.1424 -0.1148 -1.0213 35 1 6.1419 0.9420 0.4110 36 1 6.1419 -0.8268 0.6101 37 1 5.2775 -3.8565 -3.2609 38 1 3.7452 -3.9179 -2.3572 39 1 2.6948 -3.6457 -5.8769 40 1 6.8749 -1.8920 -2.4320 41 1 6.9360 -1.8022 -0.6553 42 1 7.7322 -3.7120 0.6685 43 1 9.1355 -5.7638 0.6407 44 1 9.7035 -6.8044 -1.5181 45 1 7.5645 -3.9157 -3.5929 46 1 1.6582 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042136892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:30 Heat of formation + Delta-G solvation = -12.507419 kcal Electronic energy + Delta-G solvation = -31268.872908 eV Core-core repulsion = 27250.458739 eV Total energy + Delta-G solvation = -4018.414168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.89550 -39.28490 -36.95623 -36.09959 -35.35716 -33.73481 -32.96327 -31.98859 -31.06600 -30.99077 -29.25779 -27.54072 -25.50352 -24.73853 -23.37540 -23.16236 -22.48399 -21.49265 -21.10644 -18.29063 -17.30561 -16.95351 -16.66098 -16.28699 -16.03023 -15.87106 -15.56968 -15.13251 -14.93439 -14.45199 -14.10493 -13.94217 -13.91253 -13.41261 -13.25182 -13.10126 -12.85073 -12.75757 -12.68583 -12.45444 -12.31551 -12.15729 -11.97603 -11.75620 -11.59240 -11.47768 -11.28128 -11.16354 -11.09418 -11.02938 -10.79995 -10.59564 -10.26697 -10.10820 -9.86448 -9.54024 -9.17074 -9.05875 -8.75864 -8.53337 -8.34627 -8.17195 -6.14488 -4.21069 0.84934 1.18088 1.40313 1.52771 1.55995 3.21357 3.30139 3.32307 3.45463 3.76024 4.08891 4.27600 4.34148 4.70778 4.71521 4.90799 4.93962 5.02370 5.11091 5.14339 5.19680 5.21800 5.25366 5.33385 5.36160 5.50220 5.57689 5.67026 5.71223 5.72850 5.80491 5.86753 5.98659 6.03809 6.09228 6.11352 6.27262 6.32312 6.35982 6.38190 6.52967 6.61003 6.62317 6.98644 7.10575 7.23282 7.34334 7.50161 7.81813 8.08720 8.24512 8.84003 9.45610 10.93408 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.005030 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.462757 B = 5565.334582 C = 7393.002848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.116 4.116 3 C -0.069 4.069 4 C -0.143 4.143 5 C 0.018 3.982 6 C -0.178 4.178 7 C -0.653 4.653 8 S 2.692 3.308 9 O -0.978 6.978 10 O -0.960 6.960 11 N -0.974 5.974 12 C 0.245 3.755 13 C -0.540 4.540 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.887 5.887 17 Si 0.889 3.111 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.159 3.841 22 C -0.148 4.148 23 C -0.068 4.068 24 C -0.181 4.181 25 C 0.091 3.909 26 N -0.489 5.489 27 C 0.122 3.878 28 C -0.008 4.008 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.161 0.839 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 6.155 10.633 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.162 4.162 5 C 0.016 3.984 6 C -0.234 4.234 7 C -0.739 4.739 8 S 2.783 3.217 9 O -0.968 6.968 10 O -0.950 6.950 11 N -0.812 5.812 12 C 0.123 3.877 13 C -0.579 4.579 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.032 3.968 22 C -0.152 4.152 23 C -0.095 4.095 24 C -0.201 4.201 25 C -0.066 4.066 26 N -0.197 5.197 27 C -0.035 4.035 28 C -0.028 4.028 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.178 0.822 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.866 5.036 10.334 12.483 hybrid contribution -1.059 1.918 -0.320 2.215 sum 3.807 6.954 10.014 12.772 Atomic orbital electron populations 1.20779 0.90891 1.02565 1.02686 1.19942 0.96298 0.93162 1.02334 1.21190 0.94290 0.97447 0.95845 1.21042 0.94274 0.97440 1.03423 1.19383 0.95503 0.91887 0.91600 1.21887 0.91216 1.05789 1.04509 1.30813 1.06189 1.19996 1.16949 1.01818 0.73224 0.73847 0.72804 1.93432 1.59376 1.87289 1.56683 1.93534 1.61272 1.53842 1.86392 1.57381 1.16726 1.79872 1.27258 1.19287 0.92703 0.95376 0.80333 1.21547 1.36177 0.93293 1.06877 0.91825 1.24902 0.95718 0.95663 0.97286 1.69936 1.40699 1.19971 1.21856 0.86579 0.78765 0.82990 0.79982 1.19706 1.20872 1.20926 1.20347 0.79394 0.92566 1.04494 1.21405 0.99352 1.00183 0.94272 1.21783 0.94157 0.94829 0.98731 1.22100 1.00931 0.97520 0.99565 1.22724 0.97168 0.98698 0.88039 1.67726 1.10557 1.11037 1.30410 1.22860 0.91969 0.90297 0.98405 1.20782 0.92029 0.98727 0.91229 0.90895 0.91336 0.91763 0.85888 0.85678 0.89036 0.90383 0.87536 0.93734 0.93163 0.92597 0.88662 0.88879 0.83924 0.85144 0.83279 0.82189 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.01 0.36 -1.00 16 2 C -0.12 -1.79 5.88 -104.62 -0.62 -2.40 16 3 C -0.07 -0.97 9.70 -39.58 -0.38 -1.35 16 4 C -0.14 -2.04 9.68 -39.58 -0.38 -2.43 16 5 C 0.02 0.28 5.87 -104.62 -0.61 -0.33 16 6 C -0.18 -2.39 7.91 36.00 0.28 -2.10 16 7 C -0.65 -11.94 5.91 -39.58 -0.23 -12.17 16 8 S 2.69 52.30 5.09 -107.50 -0.55 51.75 16 9 O -0.98 -17.88 13.61 -57.17 -0.78 -18.66 16 10 O -0.96 -21.74 15.70 -57.17 -0.90 -22.64 16 11 N -0.97 -18.92 2.73 -116.95 -0.32 -19.24 16 12 C 0.24 5.78 5.41 -5.19 -0.03 5.75 16 13 C -0.54 -13.59 9.38 -34.44 -0.32 -13.91 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.16 2.53 4.15 -5.19 -0.02 2.51 16 22 C -0.15 -2.37 5.41 -104.48 -0.57 -2.93 16 23 C -0.07 -1.01 9.86 -39.28 -0.39 -1.39 16 24 C -0.18 -2.36 10.11 -39.44 -0.40 -2.76 16 25 C 0.09 1.26 11.18 -17.54 -0.20 1.06 16 26 N -0.49 -8.11 10.36 -13.26 -0.14 -8.25 16 27 C 0.12 2.04 10.20 -17.56 -0.18 1.86 16 28 C -0.01 -0.15 9.20 -39.58 -0.36 -0.51 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.09 1.19 6.49 -51.93 -0.34 0.85 16 35 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 36 H 0.11 1.48 4.05 -51.93 -0.21 1.27 16 37 H 0.04 1.09 7.18 -51.93 -0.37 0.71 16 38 H 0.05 1.33 7.03 -51.93 -0.37 0.97 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.10 1.45 8.09 -51.93 -0.42 1.03 16 41 H 0.09 1.28 4.15 -51.93 -0.22 1.06 16 42 H 0.14 1.99 7.36 -52.49 -0.39 1.60 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.16 2.66 7.83 -52.49 -0.41 2.25 16 46 H 0.14 2.47 7.33 -52.49 -0.38 2.09 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -31.91 387.19 -11.29 -43.20 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.02 Total: 6.96 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -4.15 Total: -30.42 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.28 Total: -51.53 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.68 Total: -41.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.55 Total: 51.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.91 -11.29 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042136892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.695 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds