Wall clock time and date at job start Tue Mar 31 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38257 * 119.99598 * 2 1 4 4 C 1.38217 * 119.99813 * 180.28309 * 3 2 1 5 5 C 1.38262 * 119.99638 * 359.46216 * 4 3 2 6 6 C 1.50698 * 119.99875 * 180.30125 * 5 4 3 7 7 C 1.38216 * 120.00047 * 0.53827 * 5 4 3 8 8 S 1.76198 * 119.99827 * 179.76042 * 7 5 4 9 9 O 1.42103 * 106.39973 * 48.11968 * 8 7 5 10 10 O 1.42094 * 106.39955 * 181.03252 * 8 7 5 11 11 N 1.65600 * 107.22252 * 294.57760 * 8 7 5 12 12 C 1.46502 * 119.99574 * 277.55391 * 11 8 7 13 13 C 1.50700 * 109.47121 * 95.00015 * 12 11 8 14 14 H 1.08000 * 119.99759 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99758 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00302 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99719 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47046 * 119.99672 * 17 15 13 20 20 H 1.48495 * 109.47103 * 240.00101 * 17 15 13 21 21 C 1.46496 * 119.99805 * 97.54927 * 11 8 7 22 22 C 1.50707 * 109.46955 * 100.00362 * 21 11 8 23 23 C 1.38680 * 120.41330 * 269.71709 * 22 21 11 24 24 C 1.38622 * 118.41557 * 179.78133 * 23 22 21 25 25 C 1.38233 * 119.16401 * 0.51454 * 24 23 22 26 26 N 1.31857 * 120.75908 * 359.72482 * 25 24 23 27 27 C 1.31879 * 121.72583 * 0.02562 * 26 25 24 28 28 C 1.38210 * 119.99911 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47155 * 90.00005 * 1 2 3 30 30 H 1.09002 * 109.46695 * 209.99746 * 1 2 3 31 31 H 1.08996 * 109.46750 * 329.99704 * 1 2 3 32 32 H 1.07994 * 120.00178 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.00377 * 179.72347 * 4 3 2 34 34 H 1.08999 * 109.47198 * 263.82467 * 6 5 4 35 35 H 1.09003 * 109.47055 * 23.82380 * 6 5 4 36 36 H 1.09002 * 109.47129 * 143.82540 * 6 5 4 37 37 H 1.08999 * 109.46690 * 214.99498 * 12 11 8 38 38 H 1.08996 * 109.47293 * 334.99914 * 12 11 8 39 39 H 0.96997 * 120.00280 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47202 * 219.99835 * 21 11 8 41 41 H 1.08997 * 109.47240 * 340.00027 * 21 11 8 42 42 H 1.07998 * 120.78962 * 0.02701 * 23 22 21 43 43 H 1.08001 * 120.41773 * 180.21784 * 24 23 22 44 44 H 1.07994 * 119.61780 * 179.74698 * 25 24 23 45 45 H 1.08000 * 119.61302 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.00537 * 359.97432 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 -0.0059 5 6 4.2717 0.0001 -0.0006 6 6 5.7787 0.0001 -0.0002 7 6 3.5807 -1.1969 -0.0006 8 16 4.4618 -2.7228 -0.0002 9 8 5.4502 -2.6150 1.0150 10 8 3.4821 -3.7517 -0.0249 11 7 5.2770 -2.8186 -1.4384 12 6 4.5853 -3.2848 -2.6428 13 6 4.0783 -2.0986 -3.4218 14 1 4.2535 -1.0976 -3.0561 15 6 3.3909 -2.2913 -4.6014 16 7 3.1780 -3.5102 -5.0469 17 14 2.7619 -0.8209 -5.5667 18 1 3.1295 0.4309 -4.8575 19 1 3.3722 -0.8197 -6.9205 20 1 1.2844 -0.9049 -5.6898 21 6 6.6898 -2.4371 -1.5064 22 6 7.5469 -3.6763 -1.4733 23 6 7.9921 -4.1899 -0.2645 24 6 8.7743 -5.3342 -0.2820 25 6 9.0912 -5.9151 -1.4957 26 7 8.6541 -5.3960 -2.6262 27 6 7.9041 -4.3115 -2.6472 28 6 2.1981 -1.1969 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1327 -0.0104 34 1 6.1424 -0.1148 -1.0213 35 1 6.1419 0.9420 0.4110 36 1 6.1419 -0.8268 0.6101 37 1 5.2775 -3.8565 -3.2609 38 1 3.7452 -3.9179 -2.3572 39 1 2.6948 -3.6457 -5.8769 40 1 6.8749 -1.8920 -2.4320 41 1 6.9360 -1.8022 -0.6553 42 1 7.7322 -3.7120 0.6685 43 1 9.1355 -5.7638 0.6407 44 1 9.7035 -6.8044 -1.5181 45 1 7.5645 -3.9157 -3.5929 46 1 1.6582 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042136892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:28 Heat of formation + Delta-G solvation = -31.509206 kcal Electronic energy + Delta-G solvation = -31269.696887 eV Core-core repulsion = 27250.458739 eV Total energy + Delta-G solvation = -4019.238148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.08497 -40.44321 -38.49636 -37.65079 -36.95426 -34.89232 -34.75643 -33.33788 -32.35350 -32.18647 -30.32502 -29.24854 -26.98748 -25.83444 -24.78829 -24.38189 -24.02930 -22.80250 -22.29305 -19.79631 -18.75021 -18.67209 -17.91558 -17.86732 -17.45634 -17.10244 -16.75539 -16.66566 -16.12459 -16.08050 -15.47004 -15.22742 -15.05769 -14.71712 -14.54722 -14.29457 -14.19374 -14.00333 -13.94356 -13.85449 -13.73442 -13.35961 -13.29350 -13.09043 -13.05091 -13.04200 -12.78973 -12.70770 -12.47952 -12.40674 -12.31773 -12.13681 -11.88861 -11.73972 -11.46426 -10.74716 -10.58717 -10.39857 -10.26959 -9.95537 -9.80761 -9.48774 -8.17052 -6.29695 -0.60152 -0.08120 0.21594 0.34371 0.37868 1.38791 1.40977 1.51513 1.99946 2.40553 2.50633 2.76344 2.94204 3.15283 3.36717 3.59031 3.73899 3.83003 3.84926 3.92480 3.96595 4.09834 4.16836 4.23334 4.30524 4.31362 4.51673 4.61586 4.63396 4.66428 4.73902 4.78224 4.81385 4.90067 4.92827 4.96111 5.10125 5.17074 5.23707 5.29024 5.29865 5.35605 5.39385 5.48831 5.49585 5.70996 5.83504 5.85953 5.98041 6.08803 6.82291 7.06550 7.40265 8.91280 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.005030 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.462757 B = 5565.334582 C = 7393.002848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.125 4.125 3 C -0.065 4.065 4 C -0.142 4.142 5 C 0.004 3.996 6 C -0.181 4.181 7 C -0.673 4.673 8 S 2.695 3.305 9 O -0.970 6.970 10 O -1.005 7.005 11 N -0.976 5.976 12 C 0.263 3.737 13 C -0.535 4.535 14 H 0.071 0.929 15 C 0.015 3.985 16 N -0.926 5.926 17 Si 0.951 3.049 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.285 1.285 21 C 0.155 3.845 22 C -0.160 4.160 23 C -0.078 4.078 24 C -0.171 4.171 25 C 0.087 3.913 26 N -0.514 5.514 27 C 0.102 3.898 28 C -0.043 4.043 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.030 0.970 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.151 0.849 43 H 0.169 0.831 44 H 0.184 0.816 45 H 0.148 0.852 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 9.213 11.863 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.083 4.083 4 C -0.161 4.161 5 C 0.002 3.998 6 C -0.237 4.237 7 C -0.763 4.763 8 S 2.790 3.210 9 O -0.961 6.961 10 O -0.995 6.995 11 N -0.813 5.813 12 C 0.140 3.860 13 C -0.574 4.574 14 H 0.089 0.911 15 C -0.185 4.185 16 N -0.566 5.566 17 Si 0.776 3.224 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.211 1.211 21 C 0.029 3.971 22 C -0.164 4.164 23 C -0.105 4.105 24 C -0.190 4.190 25 C -0.070 4.070 26 N -0.223 5.223 27 C -0.055 4.055 28 C -0.063 4.063 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.169 0.831 43 H 0.187 0.813 44 H 0.201 0.799 45 H 0.165 0.835 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.785 8.078 11.580 15.258 hybrid contribution -1.291 0.963 -0.588 1.714 sum 4.494 9.041 10.992 14.925 Atomic orbital electron populations 1.20857 0.88887 1.04174 1.03031 1.20337 0.97971 0.92776 1.01495 1.21717 0.94592 0.98305 0.93707 1.21553 0.94755 0.98106 1.01661 1.19795 0.96936 0.91729 0.91301 1.21967 0.89589 1.07386 1.04782 1.30511 1.06369 1.19747 1.19661 1.01421 0.72835 0.74031 0.72686 1.93427 1.59073 1.87467 1.56093 1.93473 1.62625 1.56496 1.86946 1.57200 1.18127 1.80274 1.25656 1.18746 0.91374 0.94475 0.81396 1.21801 1.35227 0.93789 1.06574 0.91104 1.25712 0.96180 0.98042 0.98518 1.70068 1.41987 1.22106 1.22444 0.85607 0.77848 0.80216 0.78697 1.18372 1.20472 1.21123 1.20597 0.77413 0.93200 1.05843 1.21393 0.99879 1.00447 0.94677 1.22010 0.94460 0.95633 0.98377 1.22512 0.99310 0.96334 1.00870 1.23352 0.96754 0.99389 0.87543 1.67702 1.11212 1.11221 1.32205 1.22758 0.93159 0.91172 0.98381 1.20885 0.92356 0.99449 0.93621 0.91037 0.91340 0.88667 0.81897 0.81880 0.88735 0.86902 0.88418 0.95228 0.97062 0.92670 0.88256 0.86351 0.83137 0.81343 0.79887 0.83514 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 10.01 71.24 0.71 -1.82 16 2 C -0.12 -3.65 5.88 -19.86 -0.12 -3.77 16 3 C -0.07 -1.59 9.70 22.27 0.22 -1.37 16 4 C -0.14 -3.53 9.68 22.27 0.22 -3.31 16 5 C 0.00 0.12 5.87 -19.86 -0.12 0.00 16 6 C -0.18 -4.41 7.91 71.24 0.56 -3.85 16 7 C -0.67 -24.81 5.91 22.27 0.13 -24.68 16 8 S 2.70 108.54 5.09 -56.49 -0.29 108.25 16 9 O -0.97 -35.66 13.61 -128.00 -1.74 -37.41 16 10 O -1.00 -48.78 15.70 -128.00 -2.01 -50.79 16 11 N -0.98 -39.26 2.73 -523.91 -1.43 -40.69 16 12 C 0.26 13.17 5.41 85.63 0.46 13.64 16 13 C -0.53 -27.60 9.38 25.60 0.24 -27.36 16 14 H 0.07 3.49 7.81 -2.91 -0.02 3.46 16 15 C 0.02 0.81 5.46 84.66 0.46 1.27 16 16 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 17 Si 0.95 42.21 29.54 68.60 2.03 44.23 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 21 C 0.15 4.99 4.15 85.64 0.36 5.34 16 22 C -0.16 -5.19 5.41 -19.77 -0.11 -5.30 16 23 C -0.08 -2.23 9.86 22.47 0.22 -2.01 16 24 C -0.17 -4.10 10.11 22.36 0.23 -3.88 16 25 C 0.09 2.27 11.18 84.69 0.95 3.22 16 26 N -0.51 -17.23 10.36 -195.85 -2.03 -19.26 16 27 C 0.10 3.56 10.20 84.67 0.86 4.42 16 28 C -0.04 -1.60 9.20 22.27 0.20 -1.39 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 31 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 32 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.09 2.24 6.49 -2.39 -0.02 2.23 16 35 H 0.11 1.91 8.04 -2.39 -0.02 1.90 16 36 H 0.10 2.55 4.05 -2.39 -0.01 2.54 16 37 H 0.03 1.55 7.18 -2.39 -0.02 1.54 16 38 H 0.01 0.65 7.03 -2.39 -0.02 0.64 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.10 3.07 8.09 -2.39 -0.02 3.05 16 41 H 0.12 3.16 4.15 -2.39 -0.01 3.15 16 42 H 0.15 4.00 7.36 -2.91 -0.02 3.98 16 43 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 44 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 45 H 0.15 5.30 7.83 -2.91 -0.02 5.28 16 46 H 0.12 4.67 7.33 -2.91 -0.02 4.65 16 Total: -1.00 -72.68 387.19 1.30 -71.38 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 1.00 Total: 28.54 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 5.48 Total: -50.85 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -3.17 Total: -113.37 kcal Atomic # 8 Polarization: -84.44 SS G_CDS: -3.75 Total: -88.19 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 108.54 SS G_CDS: -0.29 Total: 108.25 kcal Total: -72.68 1.30 -71.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042136892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.875 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds