Wall clock time and date at job start Tue Mar 31 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38909 * 120.32754 * 2 1 4 4 C 1.38280 * 118.50962 * 179.77129 * 3 2 1 5 5 C 1.39194 * 119.09009 * 0.49662 * 4 3 2 6 6 S 1.76204 * 119.70806 * 179.77249 * 5 4 3 7 7 C 1.81402 * 102.99923 * 179.72330 * 6 5 4 8 8 C 1.50693 * 109.47067 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00084 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.39926 * 120.00337 * 175.95852 * 10 8 7 12 12 C 1.38685 * 120.11636 * 34.42860 * 11 10 8 13 13 C 1.38219 * 120.02267 * 180.25169 * 12 11 10 14 14 C 1.38397 * 120.24812 * 359.73935 * 13 12 11 15 15 C 1.38079 * 120.23036 * 359.97438 * 14 13 12 16 16 C 1.38997 * 119.97715 * 0.02562 * 15 14 13 17 17 S 1.76203 * 120.12492 * 179.97438 * 16 15 14 18 18 C 1.76195 * 99.99710 * 6.86727 * 17 16 15 19 19 H 1.07993 * 120.00535 * 354.89210 * 18 17 16 20 20 C 1.38692 * 119.99924 * 174.89692 * 18 17 16 21 21 N 1.31651 * 119.99729 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00324 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46901 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46849 * 119.99532 * 22 20 18 25 25 H 1.48491 * 109.47085 * 239.99831 * 22 20 18 26 26 N 1.32465 * 120.57827 * 359.49171 * 5 4 3 27 27 C 1.31960 * 121.61668 * 0.26045 * 26 5 4 28 28 H 1.08996 * 109.47084 * 269.98016 * 1 2 3 29 29 H 1.09004 * 109.47148 * 29.97230 * 1 2 3 30 30 H 1.09000 * 109.47567 * 149.97681 * 1 2 3 31 31 H 1.07995 * 120.74508 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.45361 * 180.24761 * 4 3 2 33 33 H 1.08996 * 109.47135 * 59.99920 * 7 6 5 34 34 H 1.09000 * 109.47022 * 299.99997 * 7 6 5 35 35 H 0.96998 * 119.99293 * 355.96745 * 10 8 7 36 36 H 1.08005 * 119.98535 * 359.97316 * 12 11 10 37 37 H 1.08003 * 119.87917 * 179.76915 * 13 12 11 38 38 H 1.08000 * 119.88035 * 179.97438 * 14 13 12 39 39 H 1.08002 * 120.01182 * 180.02562 * 15 14 13 40 40 H 0.97007 * 120.00174 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.56774 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1990 0.0000 4 6 3.5905 1.1551 0.0049 5 6 4.2284 -0.0820 -0.0010 6 16 5.9888 -0.1569 -0.0010 7 6 6.3214 -1.9402 -0.0010 8 6 7.8102 -2.1735 -0.0017 9 8 8.5719 -1.2296 -0.0016 10 7 8.2953 -3.4309 -0.0013 11 6 9.6748 -3.6487 -0.0873 12 6 10.5579 -2.7623 0.5110 13 6 11.9204 -2.9765 0.4204 14 6 12.4093 -4.0770 -0.2617 15 6 11.5393 -4.9693 -0.8562 16 6 10.1673 -4.7631 -0.7710 17 16 9.0536 -5.8989 -1.5288 18 6 10.1886 -7.1471 -2.0373 19 1 11.2501 -6.9974 -1.9067 20 6 9.7187 -8.3218 -2.6054 21 7 8.4247 -8.5045 -2.7642 22 14 10.9219 -9.6448 -3.1451 23 1 12.3092 -9.1988 -2.8590 24 1 10.6431 -10.9002 -2.4025 25 1 10.7700 -9.8874 -4.6022 26 7 3.5235 -1.2036 -0.0010 27 6 2.2040 -1.1914 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6860 2.1442 0.0004 32 1 4.1671 2.0683 0.0090 33 1 5.8829 -2.3915 -0.8910 34 1 5.8829 -2.3915 0.8890 35 1 7.6880 -4.1849 0.0585 36 1 10.1808 -1.9020 1.0441 37 1 12.6061 -2.2827 0.8840 38 1 13.4750 -4.2383 -0.3291 39 1 11.9247 -5.8271 -1.3873 40 1 8.0960 -9.3260 -3.1619 41 1 1.6624 -2.1258 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042173538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:24 Heat of formation + Delta-G solvation = 23.189218 kcal Electronic energy + Delta-G solvation = -24948.782268 eV Core-core repulsion = 21238.835798 eV Total energy + Delta-G solvation = -3709.946470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31403 -40.10107 -37.78911 -34.45373 -33.93767 -32.78301 -32.24579 -30.78013 -30.33752 -28.26436 -27.65615 -25.90745 -23.96441 -22.74693 -22.46211 -22.04216 -20.20572 -18.60031 -18.21357 -16.95051 -16.86177 -16.72558 -16.05506 -15.67094 -15.56194 -15.21241 -15.02769 -14.72770 -14.22603 -14.17992 -13.76736 -13.61746 -13.33197 -13.29993 -12.97977 -12.94229 -12.88176 -12.75540 -12.23554 -11.95484 -11.71952 -11.37243 -11.26044 -11.06461 -10.62543 -10.42459 -10.13749 -10.12256 -9.92591 -9.86893 -9.80848 -9.61502 -9.50199 -8.78788 -8.69509 -7.77804 -7.64195 -6.57321 -6.55297 -4.26990 0.68841 0.96241 1.15024 1.81402 2.02663 2.05909 2.73086 3.00956 3.07568 3.16053 3.25556 3.38393 3.41366 3.95470 4.24157 4.40772 4.46262 4.59788 4.65179 4.70115 4.85292 4.87810 4.96918 5.06002 5.16895 5.19657 5.29015 5.45995 5.54820 5.61461 5.64820 5.65380 5.85726 5.91820 6.13683 6.19430 6.30815 6.53047 6.81013 6.85777 7.07041 7.18956 7.42299 7.48969 7.62217 7.66540 8.11080 8.25379 8.93316 10.51688 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.002260 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.673146 B =12388.840351 C =14598.099349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.151 4.151 3 C -0.060 4.060 4 C -0.147 4.147 5 C 0.100 3.900 6 S 0.009 5.991 7 C -0.137 4.137 8 C 0.529 3.471 9 O -0.516 6.516 10 N -0.650 5.650 11 C 0.119 3.881 12 C -0.100 4.100 13 C -0.149 4.149 14 C -0.112 4.112 15 C -0.131 4.131 16 C -0.101 4.101 17 S 0.036 5.964 18 C -0.546 4.546 19 H 0.096 0.904 20 C 0.077 3.923 21 N -0.865 5.865 22 Si 0.925 3.075 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 N -0.488 5.488 27 C 0.116 3.884 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.413 0.587 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.273 0.727 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 15.499 6.745 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.156 4.156 3 C -0.087 4.087 4 C -0.173 4.173 5 C -0.149 4.149 6 S 0.250 5.750 7 C -0.288 4.288 8 C 0.315 3.685 9 O -0.392 6.392 10 N -0.295 5.295 11 C 0.017 3.983 12 C -0.122 4.122 13 C -0.173 4.173 14 C -0.133 4.133 15 C -0.156 4.156 16 C -0.218 4.218 17 S 0.291 5.709 18 C -0.693 4.693 19 H 0.113 0.887 20 C -0.133 4.133 21 N -0.499 5.499 22 Si 0.751 3.249 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.203 1.203 26 N -0.201 5.201 27 C -0.044 4.044 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.251 0.749 36 H 0.149 0.851 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.911 15.898 6.383 20.865 hybrid contribution 0.235 -1.632 -0.231 1.665 sum -11.676 14.265 6.153 19.434 Atomic orbital electron populations 1.20696 0.90081 1.03158 1.02546 1.20868 0.97645 0.94105 1.02987 1.21386 0.93391 0.98294 0.95661 1.21608 0.94994 0.97632 1.03108 1.23546 1.00198 0.91788 0.99335 1.86146 0.92630 1.05612 1.90632 1.23578 0.97035 0.98883 1.09308 1.19680 0.88948 0.83232 0.76680 1.90717 1.58681 1.41345 1.48485 1.43188 1.06740 1.08031 1.71507 1.17109 0.81825 0.97630 1.01742 1.20972 0.92754 0.99188 0.99243 1.20757 0.94608 0.98798 1.03133 1.20988 0.98848 0.94917 0.98504 1.21298 0.91700 1.00756 1.01895 1.22541 0.99102 0.99906 1.00262 1.83166 1.10615 1.14215 1.62944 1.23323 0.95287 1.03094 1.47626 0.88667 1.25099 0.96051 0.97817 0.94336 1.70005 1.12441 1.26863 1.40543 0.85991 0.80398 0.80069 0.78487 1.19122 1.20248 1.20260 1.68146 1.08733 1.28742 1.14437 1.22659 0.89453 0.97783 0.94528 0.90963 0.91366 0.91125 0.84452 0.84248 0.85644 0.85953 0.74948 0.85133 0.86896 0.87009 0.84353 0.91711 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.03 36.01 0.36 -0.16 16 2 C -0.15 -1.18 5.90 -104.45 -0.62 -1.80 16 3 C -0.06 -0.47 9.85 -39.32 -0.39 -0.85 16 4 C -0.15 -1.40 9.84 -39.21 -0.39 -1.79 16 5 C 0.10 1.18 7.00 -16.92 -0.12 1.06 16 6 S 0.01 0.11 21.05 -107.50 -2.26 -2.15 16 7 C -0.14 -1.77 5.69 36.00 0.20 -1.56 16 8 C 0.53 8.52 7.69 -10.99 -0.08 8.44 16 9 O -0.52 -9.60 13.28 5.55 0.07 -9.52 16 10 N -0.65 -11.08 5.03 -9.71 -0.05 -11.13 16 11 C 0.12 2.34 6.32 -83.45 -0.53 1.82 16 12 C -0.10 -1.86 8.70 -39.42 -0.34 -2.20 16 13 C -0.15 -2.58 10.04 -39.53 -0.40 -2.97 16 14 C -0.11 -2.00 10.03 -39.58 -0.40 -2.40 16 15 C -0.13 -2.72 9.26 -39.36 -0.36 -3.08 16 16 C -0.10 -2.20 6.12 -38.75 -0.24 -2.43 16 17 S 0.04 0.87 20.53 -107.50 -2.21 -1.33 16 18 C -0.55 -14.36 9.07 30.90 0.28 -14.08 16 19 H 0.10 2.41 4.83 -52.49 -0.25 2.16 16 20 C 0.08 2.02 5.49 -17.46 -0.10 1.93 16 21 N -0.86 -23.69 13.22 55.49 0.73 -22.95 16 22 Si 0.93 20.12 29.55 -169.99 -5.02 15.10 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 N -0.49 -5.86 9.43 -12.11 -0.11 -5.97 16 27 C 0.12 1.11 10.85 -17.57 -0.19 0.92 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.12 1.38 8.14 -51.92 -0.42 0.96 16 35 H 0.41 6.50 7.95 -40.82 -0.32 6.17 16 36 H 0.13 2.38 6.19 -52.48 -0.32 2.05 16 37 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.14 2.98 4.95 -52.49 -0.26 2.72 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -31.32 378.40 -10.96 -42.29 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.52 Total: 9.15 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -3.30 Total: -19.18 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.57 Total: -40.06 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -4.47 Total: -3.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.32 -10.96 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042173538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.477 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds