Wall clock time and date at job start Tue Mar 31 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38909 * 120.32754 * 2 1 4 4 C 1.38280 * 118.50962 * 179.77129 * 3 2 1 5 5 C 1.39194 * 119.09009 * 0.49662 * 4 3 2 6 6 S 1.76204 * 119.70806 * 179.77249 * 5 4 3 7 7 C 1.81402 * 102.99923 * 179.72330 * 6 5 4 8 8 C 1.50693 * 109.47067 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00084 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00312 * 179.97438 * 8 7 6 11 11 C 1.39926 * 120.00337 * 175.95852 * 10 8 7 12 12 C 1.38685 * 120.11636 * 34.42860 * 11 10 8 13 13 C 1.38219 * 120.02267 * 180.25169 * 12 11 10 14 14 C 1.38397 * 120.24812 * 359.73935 * 13 12 11 15 15 C 1.38079 * 120.23036 * 359.97438 * 14 13 12 16 16 C 1.38997 * 119.97715 * 0.02562 * 15 14 13 17 17 S 1.76203 * 120.12492 * 179.97438 * 16 15 14 18 18 C 1.76195 * 99.99710 * 6.86727 * 17 16 15 19 19 H 1.07993 * 120.00535 * 354.89210 * 18 17 16 20 20 C 1.38692 * 119.99924 * 174.89692 * 18 17 16 21 21 N 1.31651 * 119.99729 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00324 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46901 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46849 * 119.99532 * 22 20 18 25 25 H 1.48491 * 109.47085 * 239.99831 * 22 20 18 26 26 N 1.32465 * 120.57827 * 359.49171 * 5 4 3 27 27 C 1.31960 * 121.61668 * 0.26045 * 26 5 4 28 28 H 1.08996 * 109.47084 * 269.98016 * 1 2 3 29 29 H 1.09004 * 109.47148 * 29.97230 * 1 2 3 30 30 H 1.09000 * 109.47567 * 149.97681 * 1 2 3 31 31 H 1.07995 * 120.74508 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.45361 * 180.24761 * 4 3 2 33 33 H 1.08996 * 109.47135 * 59.99920 * 7 6 5 34 34 H 1.09000 * 109.47022 * 299.99997 * 7 6 5 35 35 H 0.96998 * 119.99293 * 355.96745 * 10 8 7 36 36 H 1.08005 * 119.98535 * 359.97316 * 12 11 10 37 37 H 1.08003 * 119.87917 * 179.76915 * 13 12 11 38 38 H 1.08000 * 119.88035 * 179.97438 * 14 13 12 39 39 H 1.08002 * 120.01182 * 180.02562 * 15 14 13 40 40 H 0.97007 * 120.00174 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.56774 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1990 0.0000 4 6 3.5905 1.1551 0.0049 5 6 4.2284 -0.0820 -0.0010 6 16 5.9888 -0.1569 -0.0010 7 6 6.3214 -1.9402 -0.0010 8 6 7.8102 -2.1735 -0.0017 9 8 8.5719 -1.2296 -0.0016 10 7 8.2953 -3.4309 -0.0013 11 6 9.6748 -3.6487 -0.0873 12 6 10.5579 -2.7623 0.5110 13 6 11.9204 -2.9765 0.4204 14 6 12.4093 -4.0770 -0.2617 15 6 11.5393 -4.9693 -0.8562 16 6 10.1673 -4.7631 -0.7710 17 16 9.0536 -5.8989 -1.5288 18 6 10.1886 -7.1471 -2.0373 19 1 11.2501 -6.9974 -1.9067 20 6 9.7187 -8.3218 -2.6054 21 7 8.4247 -8.5045 -2.7642 22 14 10.9219 -9.6448 -3.1451 23 1 12.3092 -9.1988 -2.8590 24 1 10.6431 -10.9002 -2.4025 25 1 10.7700 -9.8874 -4.6022 26 7 3.5235 -1.2036 -0.0010 27 6 2.2040 -1.1914 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6860 2.1442 0.0004 32 1 4.1671 2.0683 0.0090 33 1 5.8829 -2.3915 -0.8910 34 1 5.8829 -2.3915 0.8890 35 1 7.6880 -4.1849 0.0585 36 1 10.1808 -1.9020 1.0441 37 1 12.6061 -2.2827 0.8840 38 1 13.4750 -4.2383 -0.3291 39 1 11.9247 -5.8271 -1.3873 40 1 8.0960 -9.3260 -3.1619 41 1 1.6624 -2.1258 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042173538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:23 Heat of formation + Delta-G solvation = 6.238182 kcal Electronic energy + Delta-G solvation = -24949.517320 eV Core-core repulsion = 21238.835798 eV Total energy + Delta-G solvation = -3710.681522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51847 -41.01447 -39.27179 -35.88238 -34.74001 -34.57627 -32.93876 -32.07988 -31.84663 -29.59273 -28.25486 -27.87074 -24.67292 -24.05880 -23.63645 -23.19325 -21.59632 -20.20586 -19.29206 -18.39137 -18.13481 -17.62942 -17.48139 -17.06430 -16.87003 -16.37981 -15.94393 -15.72420 -15.60441 -15.43032 -15.11561 -14.76095 -14.63489 -14.32752 -14.19893 -13.87687 -13.81694 -13.55067 -13.41741 -13.29027 -13.00785 -12.87728 -12.82777 -12.55217 -12.12169 -11.70008 -11.58787 -11.43304 -11.39306 -10.99021 -10.81638 -10.63681 -10.61489 -10.56428 -10.39337 -9.27649 -8.57094 -8.50591 -8.39212 -6.25650 -0.02796 0.17137 0.28158 0.34260 0.50610 1.08439 1.26066 1.36954 1.39085 1.45545 1.58282 2.05038 2.16624 2.67206 2.83609 2.96541 3.11864 3.42335 3.60653 3.90549 3.92515 4.04147 4.05875 4.06507 4.20865 4.24178 4.27532 4.48180 4.63684 4.63987 4.65709 4.86620 4.88974 5.00021 5.00711 5.19316 5.29450 5.33490 5.37829 5.47834 5.59375 5.69571 5.69718 6.10242 6.17305 6.27382 6.74536 6.89559 6.94968 8.58397 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.002260 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.673146 B =12388.840351 C =14598.099349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.141 4.141 3 C -0.060 4.060 4 C -0.150 4.150 5 C 0.077 3.923 6 S -0.020 6.020 7 C -0.123 4.123 8 C 0.532 3.468 9 O -0.539 6.539 10 N -0.651 5.651 11 C 0.119 3.881 12 C -0.111 4.111 13 C -0.131 4.131 14 C -0.109 4.109 15 C -0.145 4.145 16 C -0.122 4.122 17 S -0.012 6.012 18 C -0.563 4.563 19 H 0.098 0.902 20 C 0.026 3.974 21 N -0.902 5.902 22 Si 0.993 3.007 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.272 1.272 26 N -0.514 5.514 27 C 0.096 3.904 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.171 0.829 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.418 0.582 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.276 0.724 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 16.964 7.469 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.146 4.146 3 C -0.087 4.087 4 C -0.177 4.177 5 C -0.171 4.171 6 S 0.220 5.780 7 C -0.274 4.274 8 C 0.319 3.681 9 O -0.417 6.417 10 N -0.296 5.296 11 C 0.017 3.983 12 C -0.132 4.132 13 C -0.154 4.154 14 C -0.129 4.129 15 C -0.170 4.170 16 C -0.239 4.239 17 S 0.239 5.761 18 C -0.710 4.710 19 H 0.115 0.885 20 C -0.180 4.180 21 N -0.537 5.537 22 Si 0.815 3.185 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.198 1.198 26 N -0.226 5.226 27 C -0.064 4.064 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.189 0.811 32 H 0.170 0.830 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.255 0.745 36 H 0.154 0.846 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.144 0.856 40 H 0.085 0.915 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.082 17.406 7.137 22.358 hybrid contribution 0.217 -1.875 -0.354 1.920 sum -11.865 15.532 6.783 20.689 Atomic orbital electron populations 1.20776 0.87657 1.04294 1.03570 1.21259 0.99336 0.93477 1.00566 1.21816 0.92690 0.99768 0.94396 1.21872 0.96074 0.97247 1.02471 1.23444 0.99097 0.92782 1.01728 1.86087 0.95011 1.05256 1.91626 1.23423 0.94487 0.99471 1.10065 1.20117 0.90123 0.82372 0.75469 1.90691 1.59655 1.41898 1.49446 1.43252 1.06082 1.08716 1.71528 1.17324 0.83212 0.96932 1.00852 1.21211 0.93506 0.99127 0.99392 1.21243 0.94546 0.98493 1.01073 1.21319 1.00220 0.94061 0.97348 1.21387 0.91854 1.01271 1.02490 1.22488 0.99161 1.00299 1.01911 1.83057 1.12205 1.15498 1.65298 1.23658 0.95778 1.03846 1.47761 0.88450 1.26037 0.97756 0.99943 0.94309 1.70111 1.14194 1.27649 1.41744 0.84974 0.78312 0.77154 0.78091 1.18323 1.19593 1.19760 1.68042 1.10065 1.29279 1.15231 1.23073 0.88889 0.99454 0.95004 0.89810 0.89865 0.90429 0.81112 0.82967 0.85462 0.84458 0.74452 0.84563 0.82997 0.83503 0.85639 0.91481 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.03 71.24 0.71 0.00 16 2 C -0.14 -1.91 5.90 -19.75 -0.12 -2.03 16 3 C -0.06 -0.78 9.85 22.44 0.22 -0.56 16 4 C -0.15 -2.70 9.84 22.51 0.22 -2.48 16 5 C 0.08 1.82 7.00 84.83 0.59 2.41 16 6 S -0.02 -0.53 21.05 -56.49 -1.19 -1.71 16 7 C -0.12 -3.28 5.69 71.23 0.41 -2.87 16 8 C 0.53 17.45 7.69 87.65 0.67 18.12 16 9 O -0.54 -20.18 13.28 -3.06 -0.04 -20.23 16 10 N -0.65 -22.76 5.03 -303.00 -1.52 -24.28 16 11 C 0.12 4.71 6.32 38.31 0.24 4.95 16 12 C -0.11 -3.99 8.70 22.37 0.19 -3.79 16 13 C -0.13 -4.14 10.04 22.30 0.22 -3.92 16 14 C -0.11 -3.65 10.03 22.27 0.22 -3.43 16 15 C -0.14 -6.01 9.26 22.41 0.21 -5.81 16 16 C -0.12 -5.43 6.12 22.81 0.14 -5.29 16 17 S -0.01 -0.61 20.53 -56.49 -1.16 -1.77 16 18 C -0.56 -30.53 9.07 67.93 0.62 -29.92 16 19 H 0.10 5.07 4.83 -2.91 -0.01 5.05 16 20 C 0.03 1.37 5.49 84.83 0.47 1.84 16 21 N -0.90 -50.85 13.22 21.63 0.29 -50.56 16 22 Si 0.99 41.69 29.55 68.60 2.03 43.72 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 N -0.51 -12.28 9.43 -192.22 -1.81 -14.09 16 27 C 0.10 1.74 10.85 84.62 0.92 2.66 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.35 8.09 -2.38 -0.02 0.33 16 30 H 0.08 0.45 8.09 -2.39 -0.02 0.43 16 31 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.42 13.77 7.95 -92.71 -0.74 13.03 16 36 H 0.14 4.79 6.19 -2.91 -0.02 4.77 16 37 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 39 H 0.13 5.49 4.95 -2.91 -0.01 5.48 16 40 H 0.28 14.43 8.31 -92.70 -0.77 13.66 16 41 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -69.74 378.40 2.89 -66.86 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.35 Total: 32.18 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 5.94 Total: -30.11 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -3.05 Total: -88.94 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.04 Total: -20.23 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.35 Total: -3.49 kcal Total: -69.74 2.89 -66.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042173538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.098 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds