Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47130 * 2 1 4 4 C 1.46908 * 110.99648 * 303.14857 * 3 2 1 5 5 C 1.50701 * 109.47373 * 293.95839 * 4 3 2 6 6 O 1.21280 * 119.99780 * 359.97438 * 5 4 3 7 7 N 1.34768 * 119.99896 * 180.02562 * 5 4 3 8 8 C 1.46505 * 120.00192 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47135 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00447 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99676 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00214 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99852 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47246 * 90.00761 * 13 11 9 15 15 H 1.48500 * 109.47128 * 210.00519 * 13 11 9 16 16 H 1.48495 * 109.47043 * 330.00215 * 13 11 9 17 17 C 1.46890 * 111.00335 * 67.10353 * 3 2 1 18 18 C 1.50708 * 109.47253 * 71.38566 * 17 3 2 19 19 C 1.33357 * 125.19242 * 87.30893 * 18 17 3 20 20 C 1.38457 * 114.92543 * 180.02562 * 19 18 17 21 21 C 1.33470 * 114.89507 * 359.97438 * 20 19 18 22 22 Br 1.89102 * 125.20683 * 179.97438 * 21 20 19 23 23 S 1.75881 * 109.58696 * 359.74188 * 21 20 19 24 24 H 1.09001 * 109.46866 * 181.31682 * 1 2 3 25 25 H 1.09004 * 109.47096 * 301.32041 * 1 2 3 26 26 H 1.09000 * 109.47046 * 61.31905 * 1 2 3 27 27 H 1.09001 * 109.47324 * 239.99871 * 2 1 3 28 28 H 1.09003 * 109.46864 * 119.99482 * 2 1 3 29 29 H 1.08999 * 109.46736 * 53.95630 * 4 3 2 30 30 H 1.09001 * 109.46883 * 173.95470 * 4 3 2 31 31 H 0.97003 * 120.00368 * 359.97438 * 7 5 4 32 32 H 1.09003 * 109.46540 * 299.99790 * 8 7 5 33 33 H 1.09002 * 109.46977 * 59.99107 * 8 7 5 34 34 H 0.97000 * 120.00335 * 179.97438 * 12 11 9 35 35 H 1.08996 * 109.47524 * 191.38334 * 17 3 2 36 36 H 1.08997 * 109.47395 * 311.38655 * 17 3 2 37 37 H 1.08006 * 122.53766 * 359.97438 * 19 18 17 38 38 H 1.08001 * 122.55087 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4881 2.1313 -1.1483 5 6 2.0450 1.5540 -2.4241 6 8 2.8099 0.6138 -2.3810 7 7 1.6940 2.0831 -3.6128 8 6 2.2358 1.5223 -4.8530 9 6 1.6904 2.2878 -6.0309 10 1 1.0086 3.1101 -5.8717 11 6 2.0625 1.9390 -7.3119 12 7 2.8931 0.9380 -7.5058 13 14 1.3869 2.8884 -8.7719 14 1 2.2909 4.0241 -9.0851 15 1 1.2974 1.9879 -9.9493 16 1 0.0354 3.4078 -8.4421 17 6 1.6922 2.0592 1.2633 18 6 2.5489 1.4982 2.3690 19 6 3.7667 1.9339 2.6940 20 6 4.3646 1.2629 3.7473 21 6 3.6308 0.2822 4.2777 22 35 4.1615 -0.8178 5.7213 23 16 2.0921 0.1741 3.4327 24 1 -0.3633 -1.0274 0.0236 25 1 -0.3633 0.5342 0.8779 26 1 -0.3633 0.4932 -0.9016 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 0.4008 2.0549 -1.1593 30 1 1.7780 3.1788 -1.0665 31 1 1.0825 2.8354 -3.6473 32 1 3.3231 1.5987 -4.8416 33 1 1.9461 0.4747 -4.9351 34 1 3.1547 0.6924 -8.4070 35 1 1.8809 3.1281 1.1642 36 1 0.6408 1.8963 1.5001 37 1 4.2503 2.7479 2.1744 38 1 5.3497 1.5140 4.1119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044889335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = 5.920227 kcal Electronic energy + Delta-G solvation = -21147.508403 eV Core-core repulsion = 17777.199687 eV Total energy + Delta-G solvation = -3370.308716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 360.025 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.53439 -38.27978 -36.94934 -34.13683 -32.45411 -32.34156 -30.74791 -30.03203 -27.81689 -26.33151 -25.12951 -23.57970 -22.60922 -20.99203 -19.53917 -19.22866 -17.50405 -16.94306 -16.24989 -16.00974 -15.76624 -15.34066 -14.91668 -14.55076 -14.22714 -13.68013 -13.47517 -13.33595 -13.17330 -12.94650 -12.54759 -12.46929 -12.21099 -11.95491 -11.90553 -11.68259 -11.41003 -11.11242 -11.03521 -10.97888 -10.91325 -10.65133 -10.55852 -10.31561 -9.40611 -9.05914 -8.85589 -8.74240 -8.69759 -8.23146 -7.85987 -6.17592 -4.24615 0.50041 0.80054 1.50056 1.64037 2.38169 3.23077 3.29204 3.31380 3.37840 3.69981 4.24980 4.41331 4.47670 4.86019 5.03951 5.10071 5.12501 5.18470 5.24773 5.29833 5.31312 5.41480 5.47571 5.59267 5.69224 5.85403 5.92046 6.05432 6.13571 6.35472 6.89297 7.01078 7.31759 7.44780 7.51667 7.66576 7.96460 8.62980 8.78405 9.12367 9.42252 10.92535 Molecular weight = 360.02amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.001793 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.588808 B =15611.851059 C =15790.614382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 N -0.509 5.509 4 C 0.030 3.970 5 C 0.500 3.500 6 O -0.537 6.537 7 N -0.715 5.715 8 C 0.252 3.748 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.115 3.885 18 C -0.144 4.144 19 C -0.123 4.123 20 C -0.085 4.085 21 C -0.212 4.212 22 Br 0.001 6.999 23 S 0.150 5.850 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.389 0.611 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.150 0.850 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 0.967 28.561 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.092 4.092 3 N -0.232 5.232 4 C -0.101 4.101 5 C 0.284 3.716 6 O -0.415 6.415 7 N -0.365 5.365 8 C 0.131 3.869 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.014 4.014 18 C -0.263 4.263 19 C -0.154 4.154 20 C -0.119 4.119 21 C -0.408 4.408 22 Br 0.085 6.915 23 S 0.413 5.587 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.221 0.779 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.168 0.832 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.211 -1.188 29.052 29.160 hybrid contribution -0.274 1.951 -1.242 2.329 sum -2.486 0.764 27.810 27.931 Atomic orbital electron populations 1.22456 0.98635 1.02699 1.01501 1.22486 0.92256 0.89596 1.04821 1.61874 1.59243 1.02391 0.99720 1.22112 0.98692 0.98921 0.90398 1.20209 0.82364 0.84268 0.84787 1.90631 1.35549 1.28255 1.87034 1.46447 1.47865 1.35140 1.07001 1.19075 0.94723 0.94488 0.78589 1.21224 1.29099 1.16983 0.90870 0.91935 1.24958 0.94889 0.95137 0.99072 1.69973 1.32843 1.27179 1.22233 0.86420 0.79271 0.79583 0.81660 1.20452 1.21015 1.19780 1.20660 0.95556 0.98538 0.86656 1.24552 0.99900 1.00491 1.01353 1.20059 0.94330 1.02956 0.98051 1.20227 1.01008 0.94472 0.96209 1.26036 1.03082 1.06316 1.05383 1.96699 1.90554 1.64770 1.39512 1.84357 1.14318 1.33727 1.26249 0.91691 0.93117 0.92083 0.87602 0.90954 0.91677 0.88311 0.77869 0.95557 0.95645 0.92440 0.88523 0.92945 0.83238 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 9.22 37.16 0.34 -1.85 16 2 C 0.04 0.49 5.58 -3.82 -0.02 0.47 16 3 N -0.51 -6.73 4.40 -237.51 -1.04 -7.77 16 4 C 0.03 0.39 5.14 -4.97 -0.03 0.37 16 5 C 0.50 9.52 7.57 -10.99 -0.08 9.44 16 6 O -0.54 -12.51 14.30 5.56 0.08 -12.43 16 7 N -0.72 -14.51 5.55 -61.47 -0.34 -14.85 16 8 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 9 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 10 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.88 -25.94 13.29 55.43 0.74 -25.21 16 13 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C 0.12 1.15 5.36 -4.98 -0.03 1.12 16 18 C -0.14 -1.48 5.37 -36.01 -0.19 -1.68 16 19 C -0.12 -1.22 10.05 -41.21 -0.41 -1.64 16 20 C -0.09 -0.82 10.11 -41.17 -0.42 -1.24 16 21 C -0.21 -2.14 6.97 29.06 0.20 -1.94 16 22 Br 0.00 0.01 34.07 -68.01 -2.32 -2.31 16 23 S 0.15 1.50 22.04 -107.50 -2.37 -0.87 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.49 6.33 -51.93 -0.33 0.16 16 26 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 27 H 0.11 1.83 5.94 -51.93 -0.31 1.52 16 28 H 0.07 0.94 6.13 -51.93 -0.32 0.62 16 29 H 0.07 0.74 5.94 -51.93 -0.31 0.43 16 30 H 0.10 1.08 7.87 -51.93 -0.41 0.68 16 31 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 0.80 7.82 -51.93 -0.41 0.39 16 36 H 0.05 0.47 6.08 -51.93 -0.32 0.15 16 37 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -31.61 347.22 -10.83 -42.45 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.71 Total: 3.73 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.08 Total: -3.61 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.65 Total: -47.83 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.37 Total: -0.87 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.32 Total: -2.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.61 -10.83 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044889335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.367 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds