Wall clock time and date at job start Tue Mar 31 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47130 * 2 1 4 4 C 1.46908 * 110.99648 * 303.14857 * 3 2 1 5 5 C 1.50701 * 109.47373 * 293.95839 * 4 3 2 6 6 O 1.21280 * 119.99780 * 359.97438 * 5 4 3 7 7 N 1.34768 * 119.99896 * 180.02562 * 5 4 3 8 8 C 1.46505 * 120.00192 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47135 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00447 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99676 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00214 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99852 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47246 * 90.00761 * 13 11 9 15 15 H 1.48500 * 109.47128 * 210.00519 * 13 11 9 16 16 H 1.48495 * 109.47043 * 330.00215 * 13 11 9 17 17 C 1.46890 * 111.00335 * 67.10353 * 3 2 1 18 18 C 1.50708 * 109.47253 * 71.38566 * 17 3 2 19 19 C 1.33357 * 125.19242 * 87.30893 * 18 17 3 20 20 C 1.38457 * 114.92543 * 180.02562 * 19 18 17 21 21 C 1.33470 * 114.89507 * 359.97438 * 20 19 18 22 22 Br 1.89102 * 125.20683 * 179.97438 * 21 20 19 23 23 S 1.75881 * 109.58696 * 359.74188 * 21 20 19 24 24 H 1.09001 * 109.46866 * 181.31682 * 1 2 3 25 25 H 1.09004 * 109.47096 * 301.32041 * 1 2 3 26 26 H 1.09000 * 109.47046 * 61.31905 * 1 2 3 27 27 H 1.09001 * 109.47324 * 239.99871 * 2 1 3 28 28 H 1.09003 * 109.46864 * 119.99482 * 2 1 3 29 29 H 1.08999 * 109.46736 * 53.95630 * 4 3 2 30 30 H 1.09001 * 109.46883 * 173.95470 * 4 3 2 31 31 H 0.97003 * 120.00368 * 359.97438 * 7 5 4 32 32 H 1.09003 * 109.46540 * 299.99790 * 8 7 5 33 33 H 1.09002 * 109.46977 * 59.99107 * 8 7 5 34 34 H 0.97000 * 120.00335 * 179.97438 * 12 11 9 35 35 H 1.08996 * 109.47524 * 191.38334 * 17 3 2 36 36 H 1.08997 * 109.47395 * 311.38655 * 17 3 2 37 37 H 1.08006 * 122.53766 * 359.97438 * 19 18 17 38 38 H 1.08001 * 122.55087 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4881 2.1313 -1.1483 5 6 2.0450 1.5540 -2.4241 6 8 2.8099 0.6138 -2.3810 7 7 1.6940 2.0831 -3.6128 8 6 2.2358 1.5223 -4.8530 9 6 1.6904 2.2878 -6.0309 10 1 1.0086 3.1101 -5.8717 11 6 2.0625 1.9390 -7.3119 12 7 2.8931 0.9380 -7.5058 13 14 1.3869 2.8884 -8.7719 14 1 2.2909 4.0241 -9.0851 15 1 1.2974 1.9879 -9.9493 16 1 0.0354 3.4078 -8.4421 17 6 1.6922 2.0592 1.2633 18 6 2.5489 1.4982 2.3690 19 6 3.7667 1.9339 2.6940 20 6 4.3646 1.2629 3.7473 21 6 3.6308 0.2822 4.2777 22 35 4.1615 -0.8178 5.7213 23 16 2.0921 0.1741 3.4327 24 1 -0.3633 -1.0274 0.0236 25 1 -0.3633 0.5342 0.8779 26 1 -0.3633 0.4932 -0.9016 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 0.4008 2.0549 -1.1593 30 1 1.7780 3.1788 -1.0665 31 1 1.0825 2.8354 -3.6473 32 1 3.3231 1.5987 -4.8416 33 1 1.9461 0.4747 -4.9351 34 1 3.1547 0.6924 -8.4070 35 1 1.8809 3.1281 1.1642 36 1 0.6408 1.8963 1.5001 37 1 4.2503 2.7479 2.1744 38 1 5.3497 1.5140 4.1119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044889335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:49 Heat of formation + Delta-G solvation = -15.717379 kcal Electronic energy + Delta-G solvation = -21148.446680 eV Core-core repulsion = 17777.199687 eV Total energy + Delta-G solvation = -3371.246993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 360.025 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85892 -39.26610 -38.01915 -36.03190 -34.31876 -33.22325 -31.64378 -31.12053 -29.40972 -27.61154 -26.07175 -24.71135 -24.16713 -22.17251 -21.08710 -19.99870 -18.85287 -18.19775 -17.46392 -17.17556 -17.16491 -16.60301 -16.25368 -15.91665 -15.78149 -14.89810 -14.69239 -14.30472 -14.07556 -13.96533 -13.88601 -13.70254 -13.64109 -13.40749 -12.93449 -12.89190 -12.71746 -12.65664 -12.41670 -12.20578 -11.87436 -11.79862 -11.68067 -11.46608 -11.31636 -10.78419 -10.61573 -9.76981 -9.61896 -9.46213 -9.19803 -8.27787 -6.44236 -0.26303 0.06303 0.74987 0.89525 1.43887 1.46219 1.57259 1.62679 1.86498 2.31416 2.52337 3.07103 3.14216 3.70567 3.98334 4.07048 4.14828 4.22961 4.36459 4.38410 4.47145 4.49282 4.56377 4.62193 4.93127 4.96744 5.10086 5.14588 5.17451 5.27310 5.28922 5.40700 5.52301 5.73644 5.87394 5.93858 6.06806 6.67825 7.00632 7.25734 7.59906 8.84313 Molecular weight = 360.02amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.001793 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.588808 B =15611.851059 C =15790.614382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.040 3.960 3 N -0.530 5.530 4 C 0.045 3.955 5 C 0.495 3.505 6 O -0.585 6.585 7 N -0.711 5.711 8 C 0.270 3.730 9 C -0.554 4.554 10 H 0.085 0.915 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.984 3.016 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.254 1.254 17 C 0.118 3.882 18 C -0.154 4.154 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.225 4.225 22 Br 0.007 6.993 23 S 0.146 5.854 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.408 0.592 32 H -0.016 1.016 33 H -0.016 1.016 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.161 0.839 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 3.381 29.465 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.088 4.088 3 N -0.254 5.254 4 C -0.086 4.086 5 C 0.282 3.718 6 O -0.466 6.466 7 N -0.362 5.362 8 C 0.147 3.853 9 C -0.592 4.592 10 H 0.103 0.897 11 C -0.198 4.198 12 N -0.571 5.571 13 Si 0.807 3.193 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.178 1.178 17 C -0.010 4.010 18 C -0.273 4.273 19 C -0.159 4.159 20 C -0.123 4.123 21 C -0.422 4.422 22 Br 0.090 6.910 23 S 0.409 5.591 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.151 0.849 31 H 0.244 0.756 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.179 0.821 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.986 1.261 30.004 30.294 hybrid contribution 0.346 1.129 -1.422 1.848 sum -3.640 2.390 28.583 28.912 Atomic orbital electron populations 1.22378 0.96629 1.03292 1.02226 1.22283 0.93865 0.89979 1.02697 1.61751 1.60217 1.02297 1.01107 1.22040 0.99779 0.99820 0.86919 1.21345 0.81167 0.83211 0.86098 1.90623 1.37675 1.30414 1.87838 1.46171 1.48331 1.35809 1.05860 1.18463 0.92395 0.92830 0.81639 1.21636 1.29161 1.17324 0.91044 0.89682 1.26083 0.94971 0.96020 1.02714 1.70144 1.34563 1.29263 1.23093 0.85165 0.79276 0.77848 0.76979 1.19627 1.21152 1.17787 1.20763 0.96348 0.99350 0.84566 1.24700 1.00288 1.00627 1.01666 1.20285 0.94326 1.03244 0.98072 1.20457 1.01618 0.94160 0.96030 1.26215 1.03324 1.06760 1.05864 1.96697 1.90489 1.64633 1.39167 1.84309 1.14469 1.33901 1.26375 0.91444 0.90739 0.92646 0.92138 0.90692 0.88859 0.84887 0.75634 0.99804 0.99779 0.92336 0.86150 0.91295 0.82126 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 9.22 71.98 0.66 -3.21 16 2 C 0.04 1.07 5.58 86.30 0.48 1.55 16 3 N -0.53 -13.04 4.40 -905.35 -3.98 -17.02 16 4 C 0.04 1.07 5.14 85.56 0.44 1.51 16 5 C 0.49 18.90 7.57 87.66 0.66 19.56 16 6 O -0.59 -28.50 14.30 -3.03 -0.04 -28.54 16 7 N -0.71 -28.90 5.55 -466.79 -2.59 -31.49 16 8 C 0.27 14.68 5.43 85.63 0.46 15.14 16 9 C -0.55 -29.75 9.28 25.60 0.24 -29.51 16 10 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 11 C 0.00 0.09 5.46 84.66 0.46 0.55 16 12 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 13 Si 0.98 41.95 29.54 68.60 2.03 43.98 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 17 C 0.12 1.97 5.36 85.56 0.46 2.43 16 18 C -0.15 -2.86 5.37 24.58 0.13 -2.72 16 19 C -0.13 -2.32 10.05 21.22 0.21 -2.10 16 20 C -0.09 -1.58 10.11 21.24 0.21 -1.37 16 21 C -0.23 -4.31 6.97 66.74 0.46 -3.85 16 22 Br 0.01 0.11 34.07 -20.37 -0.69 -0.58 16 23 S 0.15 2.72 22.04 -56.49 -1.25 1.48 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.19 6.33 -2.39 -0.02 1.18 16 26 H 0.05 1.21 6.30 -2.39 -0.02 1.19 16 27 H 0.06 2.19 5.94 -2.39 -0.01 2.18 16 28 H 0.07 1.93 6.13 -2.39 -0.01 1.91 16 29 H 0.09 1.78 5.94 -2.39 -0.01 1.77 16 30 H 0.13 2.35 7.87 -2.39 -0.02 2.33 16 31 H 0.41 13.31 8.32 -92.71 -0.77 12.54 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.12 1.46 7.82 -2.39 -0.02 1.44 16 36 H 0.07 0.94 6.08 -2.39 -0.01 0.93 16 37 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -72.46 347.22 -1.02 -73.48 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.33 Total: 16.73 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.90 Total: -2.01 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -6.29 Total: -104.53 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.25 Total: 1.48 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -0.69 Total: -0.58 kcal Total: -72.46 -1.02 -73.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044889335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.767 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds