Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00180 * 2 1 4 4 C 1.50702 * 109.46888 * 293.94941 * 3 2 1 5 5 H 1.07998 * 119.99917 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00246 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99532 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00401 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47357 * 59.99663 * 8 6 4 10 10 H 1.48498 * 109.47123 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46929 * 299.99871 * 8 6 4 12 12 C 1.39031 * 110.99733 * 123.95233 * 2 1 3 13 13 C 1.38940 * 120.10693 * 296.06417 * 12 2 1 14 14 C 1.37897 * 120.14626 * 179.72085 * 13 12 2 15 15 C 1.39188 * 120.36897 * 0.52130 * 14 13 12 16 16 N 1.40101 * 119.88924 * 179.75943 * 15 14 13 17 17 C 1.34768 * 120.00402 * 326.39212 * 16 15 14 18 18 O 1.21718 * 120.00019 * 354.73263 * 17 16 15 19 19 C 1.46558 * 119.99932 * 174.45070 * 17 16 15 20 20 C 1.36667 * 125.45655 * 180.27757 * 19 17 16 21 21 C 1.37473 * 113.29213 * 179.97438 * 20 19 17 22 22 C 1.33819 * 115.10133 * 359.97438 * 21 20 19 23 23 S 1.70615 * 110.95881 * 359.72803 * 22 21 20 24 24 C 1.38327 * 120.20997 * 359.48010 * 15 14 13 25 25 C 1.39779 * 119.84942 * 0.25774 * 24 15 14 26 26 C 1.47295 * 120.18159 * 180.02562 * 25 24 15 27 27 O 1.21533 * 119.99875 * 180.02562 * 26 25 24 28 28 O 1.34764 * 120.00022 * 0.02562 * 26 25 24 29 29 H 1.08995 * 109.47114 * 296.04857 * 1 2 3 30 30 H 1.09003 * 109.46877 * 56.05256 * 1 2 3 31 31 H 1.09003 * 109.47318 * 176.04895 * 1 2 3 32 32 H 1.08994 * 109.47407 * 53.95013 * 3 2 1 33 33 H 1.08998 * 109.46961 * 173.95856 * 3 2 1 34 34 H 0.96999 * 120.00125 * 179.97438 * 7 6 4 35 35 H 1.07991 * 119.92795 * 359.97438 * 13 12 2 36 36 H 1.08007 * 119.81338 * 180.27650 * 14 13 12 37 37 H 0.97001 * 119.99514 * 146.39711 * 16 15 14 38 38 H 1.07995 * 123.35183 * 0.02562 * 20 19 17 39 39 H 1.07995 * 122.45066 * 180.02562 * 21 20 19 40 40 H 1.08007 * 124.51974 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.07259 * 180.23511 * 24 15 14 42 42 H 0.96699 * 116.99957 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3493 -1.5287 7 7 2.7120 4.0018 -0.6151 8 14 1.5820 4.1871 -3.1379 9 1 0.1048 4.2235 -3.2852 10 1 2.1143 5.5734 -3.1379 11 1 2.1739 3.4300 -4.2701 12 6 1.9672 -0.7249 1.0767 13 6 1.7239 -0.2984 2.3764 14 6 2.2127 -1.0199 3.4450 15 6 2.9618 -2.1735 3.2315 16 7 3.4578 -2.8961 4.3245 17 6 3.8316 -2.2494 5.4463 18 8 3.8291 -1.0326 5.4768 19 6 4.2351 -3.0113 6.6315 20 6 4.6278 -2.4725 7.8245 21 6 4.9518 -3.4186 8.7678 22 6 4.8290 -4.6884 8.3637 23 16 4.2826 -4.7650 6.7493 24 6 3.2131 -2.6118 1.9438 25 6 2.7173 -1.8903 0.8541 26 6 2.9800 -2.3507 -0.5201 27 8 2.5477 -1.7206 -1.4651 28 8 3.6997 -3.4707 -0.7295 29 1 -0.3633 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 1.5612 1.9274 0.8308 33 1 3.0797 1.3443 0.1082 34 1 2.9866 4.9179 -0.7771 35 1 1.1472 0.5979 2.5502 36 1 2.0166 -0.6859 4.4532 37 1 3.5323 -3.8619 4.2738 38 1 4.6777 -1.4095 8.0081 39 1 5.2806 -3.1563 9.7624 40 1 5.0431 -5.5499 8.9790 41 1 3.7914 -3.5093 1.7808 42 1 3.8463 -3.7328 -1.6487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046053421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -33.145268 kcal Electronic energy + Delta-G solvation = -28738.336004 eV Core-core repulsion = 24583.193817 eV Total energy + Delta-G solvation = -4155.142187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.78162 -39.83073 -38.61424 -37.88385 -36.41453 -35.39363 -34.27988 -32.43872 -31.23187 -30.52070 -28.67932 -27.15328 -25.71842 -24.93447 -24.03260 -22.83237 -22.28068 -20.91373 -20.04533 -19.70472 -18.99416 -17.84280 -17.25043 -16.50672 -16.32071 -15.88565 -15.75219 -15.69562 -15.23466 -15.08703 -14.62065 -14.54287 -14.12391 -13.83833 -13.59163 -13.36508 -13.26103 -13.19707 -12.76812 -12.58407 -12.44404 -12.36263 -11.92927 -11.61046 -11.44928 -11.18730 -11.03718 -10.89807 -10.71088 -10.52887 -10.41863 -10.24378 -9.94032 -9.84415 -9.35260 -9.23561 -9.05868 -8.83044 -8.39093 -7.91383 -7.31211 -5.97148 -3.97898 0.04298 0.98690 1.01951 1.35956 1.41593 2.01211 2.70308 2.81678 3.10554 3.38628 3.41738 3.42042 3.46139 4.00239 4.35712 4.46010 4.54832 4.74120 4.85315 5.02731 5.04733 5.11600 5.37992 5.41045 5.48739 5.57771 5.67911 5.71905 5.87419 5.91019 6.06290 6.17366 6.19831 6.23636 6.44941 6.67724 6.76698 6.89708 6.91236 7.10091 7.27605 7.33650 7.80397 7.88207 8.07767 8.17975 8.45479 8.61373 9.08668 9.65083 11.13738 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.002316 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.931053 B =12084.537374 C =13259.434216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.500 5.500 3 C 0.202 3.798 4 C -0.502 4.502 5 H 0.066 0.934 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.175 3.825 13 C -0.144 4.144 14 C -0.073 4.073 15 C 0.109 3.891 16 N -0.666 5.666 17 C 0.589 3.411 18 O -0.504 6.504 19 C -0.267 4.267 20 C -0.051 4.051 21 C -0.150 4.150 22 C -0.227 4.227 23 S 0.201 5.799 24 C -0.084 4.084 25 C -0.098 4.098 26 C 0.511 3.489 27 O -0.450 6.450 28 O -0.531 6.531 29 H 0.017 0.983 30 H 0.083 0.917 31 H 0.046 0.954 32 H -0.002 1.002 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.406 0.594 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.139 0.861 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -22.391 17.669 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.221 5.221 3 C 0.080 3.920 4 C -0.541 4.541 5 H 0.084 0.916 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.078 3.922 13 C -0.165 4.165 14 C -0.093 4.093 15 C 0.017 3.983 16 N -0.311 5.311 17 C 0.376 3.624 18 O -0.379 6.379 19 C -0.388 4.388 20 C -0.084 4.084 21 C -0.181 4.181 22 C -0.365 4.365 23 S 0.467 5.533 24 C -0.105 4.105 25 C -0.101 4.101 26 C 0.352 3.648 27 O -0.333 6.333 28 O -0.344 6.344 29 H 0.035 0.965 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.015 0.985 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.242 0.758 38 H 0.174 0.826 39 H 0.165 0.835 40 H 0.188 0.812 41 H 0.156 0.844 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.695 -22.435 16.449 27.949 hybrid contribution 0.281 1.385 0.524 1.507 sum 2.975 -21.050 16.973 27.204 Atomic orbital electron populations 1.22222 0.86585 1.00034 1.01114 1.59711 1.07539 1.18192 1.36689 1.19808 0.95457 0.79607 0.97178 1.21074 1.34852 0.96612 1.01521 0.91564 1.24985 0.95358 0.97324 0.97027 1.69958 1.38336 1.11512 1.34094 0.86522 0.78643 0.78183 0.83830 1.20268 1.21434 1.20163 1.19176 0.91830 0.91038 0.90141 1.21777 1.01724 1.00704 0.92285 1.21183 0.94243 0.93709 1.00214 1.17387 0.99302 0.95701 0.85926 1.43249 1.64186 1.10293 1.13388 1.16998 0.76897 0.87055 0.81486 1.90909 1.51873 1.12577 1.82572 1.24542 1.17151 0.97387 0.99673 1.20880 0.95209 1.01967 0.90334 1.20090 1.04772 0.91440 1.01770 1.25356 1.07744 1.02262 1.01091 1.83007 1.60705 1.01469 1.08088 1.20986 0.99181 1.00608 0.89760 1.18780 1.04385 0.97233 0.89712 1.20563 0.76212 0.78067 0.90000 1.91064 1.45928 1.53248 1.43023 1.84541 1.69494 1.43766 1.36574 0.96469 0.89814 0.93538 0.98474 0.95241 0.92879 0.84599 0.84674 0.75822 0.82582 0.83481 0.81224 0.84351 0.73576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 9.19 60.06 0.55 1.50 16 2 N -0.50 -11.45 2.64 -180.06 -0.48 -11.92 16 3 C 0.20 5.48 4.30 -4.97 -0.02 5.45 16 4 C -0.50 -14.58 8.46 -34.44 -0.29 -14.87 16 5 H 0.07 1.92 7.12 -52.49 -0.37 1.55 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 8 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.17 3.47 4.68 -83.54 -0.39 3.08 16 13 C -0.14 -2.59 8.63 -39.45 -0.34 -2.93 16 14 C -0.07 -1.16 8.63 -39.35 -0.34 -1.50 16 15 C 0.11 1.54 6.27 -83.69 -0.52 1.01 16 16 N -0.67 -7.40 5.33 -11.08 -0.06 -7.46 16 17 C 0.59 7.35 7.51 -12.91 -0.10 7.26 16 18 O -0.50 -8.23 14.53 5.17 0.08 -8.15 16 19 C -0.27 -2.54 6.45 -36.80 -0.24 -2.78 16 20 C -0.05 -0.44 10.01 -40.43 -0.40 -0.84 16 21 C -0.15 -0.95 10.15 -41.41 -0.42 -1.37 16 22 C -0.23 -1.24 10.92 29.18 0.32 -0.92 16 23 S 0.20 1.22 22.17 -107.50 -2.38 -1.17 16 24 C -0.08 -1.19 9.52 -38.97 -0.37 -1.56 16 25 C -0.10 -1.73 5.89 -104.84 -0.62 -2.34 16 26 C 0.51 9.05 8.26 34.41 0.28 9.34 16 27 O -0.45 -9.82 15.80 -19.29 -0.30 -10.12 16 28 O -0.53 -6.83 12.68 -40.67 -0.52 -7.35 16 29 H 0.02 0.32 7.33 -51.93 -0.38 -0.06 16 30 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.00 -0.07 7.46 -51.93 -0.39 -0.46 16 33 H 0.03 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.14 2.47 7.11 -52.49 -0.37 2.10 16 36 H 0.14 2.11 6.41 -52.48 -0.34 1.77 16 37 H 0.41 3.15 7.94 -40.82 -0.32 2.82 16 38 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.17 0.50 8.06 -52.48 -0.42 0.07 16 41 H 0.14 1.56 7.61 -52.48 -0.40 1.16 16 42 H 0.41 3.48 9.11 45.56 0.42 3.89 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -36.71 377.16 -9.02 -45.73 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.76 Total: 4.11 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.00 Total: 0.00 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.20 Total: -46.07 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.75 Total: -25.62 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.38 Total: -1.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.71 -9.02 -45.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046053421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.584 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds