Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00180 * 2 1 4 4 C 1.50702 * 109.46888 * 293.94941 * 3 2 1 5 5 H 1.07998 * 119.99917 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00246 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99532 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00401 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47357 * 59.99663 * 8 6 4 10 10 H 1.48498 * 109.47123 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46929 * 299.99871 * 8 6 4 12 12 C 1.39031 * 110.99733 * 123.95233 * 2 1 3 13 13 C 1.38940 * 120.10693 * 296.06417 * 12 2 1 14 14 C 1.37897 * 120.14626 * 179.72085 * 13 12 2 15 15 C 1.39188 * 120.36897 * 0.52130 * 14 13 12 16 16 N 1.40101 * 119.88924 * 179.75943 * 15 14 13 17 17 C 1.34768 * 120.00402 * 326.39212 * 16 15 14 18 18 O 1.21718 * 120.00019 * 354.73263 * 17 16 15 19 19 C 1.46558 * 119.99932 * 174.45070 * 17 16 15 20 20 C 1.36667 * 125.45655 * 180.27757 * 19 17 16 21 21 C 1.37473 * 113.29213 * 179.97438 * 20 19 17 22 22 C 1.33819 * 115.10133 * 359.97438 * 21 20 19 23 23 S 1.70615 * 110.95881 * 359.72803 * 22 21 20 24 24 C 1.38327 * 120.20997 * 359.48010 * 15 14 13 25 25 C 1.39779 * 119.84942 * 0.25774 * 24 15 14 26 26 C 1.47295 * 120.18159 * 180.02562 * 25 24 15 27 27 O 1.21533 * 119.99875 * 180.02562 * 26 25 24 28 28 O 1.34764 * 120.00022 * 0.02562 * 26 25 24 29 29 H 1.08995 * 109.47114 * 296.04857 * 1 2 3 30 30 H 1.09003 * 109.46877 * 56.05256 * 1 2 3 31 31 H 1.09003 * 109.47318 * 176.04895 * 1 2 3 32 32 H 1.08994 * 109.47407 * 53.95013 * 3 2 1 33 33 H 1.08998 * 109.46961 * 173.95856 * 3 2 1 34 34 H 0.96999 * 120.00125 * 179.97438 * 7 6 4 35 35 H 1.07991 * 119.92795 * 359.97438 * 13 12 2 36 36 H 1.08007 * 119.81338 * 180.27650 * 14 13 12 37 37 H 0.97001 * 119.99514 * 146.39711 * 16 15 14 38 38 H 1.07995 * 123.35183 * 0.02562 * 20 19 17 39 39 H 1.07995 * 122.45066 * 180.02562 * 21 20 19 40 40 H 1.08007 * 124.51974 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.07259 * 180.23511 * 24 15 14 42 42 H 0.96699 * 116.99957 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3493 -1.5287 7 7 2.7120 4.0018 -0.6151 8 14 1.5820 4.1871 -3.1379 9 1 0.1048 4.2235 -3.2852 10 1 2.1143 5.5734 -3.1379 11 1 2.1739 3.4300 -4.2701 12 6 1.9672 -0.7249 1.0767 13 6 1.7239 -0.2984 2.3764 14 6 2.2127 -1.0199 3.4450 15 6 2.9618 -2.1735 3.2315 16 7 3.4578 -2.8961 4.3245 17 6 3.8316 -2.2494 5.4463 18 8 3.8291 -1.0326 5.4768 19 6 4.2351 -3.0113 6.6315 20 6 4.6278 -2.4725 7.8245 21 6 4.9518 -3.4186 8.7678 22 6 4.8290 -4.6884 8.3637 23 16 4.2826 -4.7650 6.7493 24 6 3.2131 -2.6118 1.9438 25 6 2.7173 -1.8903 0.8541 26 6 2.9800 -2.3507 -0.5201 27 8 2.5477 -1.7206 -1.4651 28 8 3.6997 -3.4707 -0.7295 29 1 -0.3633 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 1.5612 1.9274 0.8308 33 1 3.0797 1.3443 0.1082 34 1 2.9866 4.9179 -0.7771 35 1 1.1472 0.5979 2.5502 36 1 2.0166 -0.6859 4.4532 37 1 3.5323 -3.8619 4.2738 38 1 4.6777 -1.4095 8.0081 39 1 5.2806 -3.1563 9.7624 40 1 5.0431 -5.5499 8.9790 41 1 3.7914 -3.5093 1.7808 42 1 3.8463 -3.7328 -1.6487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046053421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = -58.497999 kcal Electronic energy + Delta-G solvation = -28739.435381 eV Core-core repulsion = 24583.193817 eV Total energy + Delta-G solvation = -4156.241564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.96567 -41.05950 -39.90727 -38.64465 -37.76568 -36.71850 -35.61149 -34.54184 -32.54768 -31.40462 -29.97339 -29.07583 -27.04463 -25.93856 -25.52485 -24.43308 -23.25880 -22.44510 -21.30150 -20.47370 -19.75811 -19.06008 -18.60450 -18.42006 -17.45466 -17.13414 -16.82708 -16.75305 -16.69759 -16.37210 -16.18432 -15.84221 -15.41551 -15.23110 -14.87331 -14.85758 -14.23383 -14.07532 -13.92640 -13.73308 -13.71184 -13.65485 -13.27588 -13.21444 -12.87119 -12.78520 -12.55043 -12.38845 -12.32594 -12.09101 -11.97932 -11.55265 -11.52679 -11.38265 -11.18670 -10.63802 -10.16434 -9.95634 -9.52722 -9.19553 -9.08778 -8.21602 -6.31836 -0.61216 -0.33595 0.10702 0.45636 0.90077 1.33492 1.38551 1.43250 1.51110 1.64942 1.75731 2.05992 2.20014 2.39179 2.68027 3.08815 3.13257 3.53722 3.76972 3.88138 4.11952 4.14727 4.26658 4.32030 4.36010 4.45913 4.54016 4.60081 4.70823 4.85609 4.93839 4.99847 5.03938 5.04696 5.16029 5.18647 5.22098 5.34525 5.40495 5.62848 5.69965 5.77812 6.04941 6.17112 6.18292 6.73138 6.81553 6.87718 7.22694 7.36635 8.89318 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.002316 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.931053 B =12084.537374 C =13259.434216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.506 5.506 3 C 0.224 3.776 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.973 3.027 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.137 3.863 13 C -0.152 4.152 14 C -0.073 4.073 15 C 0.124 3.876 16 N -0.652 5.652 17 C 0.588 3.412 18 O -0.553 6.553 19 C -0.308 4.308 20 C -0.055 4.055 21 C -0.163 4.163 22 C -0.212 4.212 23 S 0.253 5.747 24 C -0.062 4.062 25 C -0.110 4.110 26 C 0.520 3.480 27 O -0.501 6.501 28 O -0.507 6.507 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.071 0.929 32 H -0.026 1.026 33 H -0.010 1.010 34 H 0.265 0.735 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.426 0.574 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.203 0.797 41 H 0.179 0.821 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -25.960 18.628 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.227 5.227 3 C 0.099 3.901 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.797 3.203 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.041 3.959 13 C -0.173 4.173 14 C -0.094 4.094 15 C 0.030 3.970 16 N -0.299 5.299 17 C 0.378 3.622 18 O -0.432 6.432 19 C -0.428 4.428 20 C -0.090 4.090 21 C -0.193 4.193 22 C -0.350 4.350 23 S 0.521 5.479 24 C -0.083 4.083 25 C -0.113 4.113 26 C 0.362 3.638 27 O -0.388 6.388 28 O -0.322 6.322 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.089 0.911 32 H -0.008 1.008 33 H 0.008 0.992 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.265 0.735 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.220 0.780 41 H 0.196 0.804 42 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 3.439 -26.110 17.419 31.575 hybrid contribution 0.153 2.260 0.429 2.306 sum 3.593 -23.850 17.848 30.004 Atomic orbital electron populations 1.22200 0.85477 1.01297 1.00622 1.59523 1.08754 1.15569 1.38820 1.19331 0.92869 0.82168 0.95711 1.21353 1.35006 0.97253 1.02124 0.91957 1.25945 0.94987 0.97961 1.00884 1.70096 1.39258 1.11926 1.36258 0.85388 0.79028 0.77037 0.78866 1.18805 1.20585 1.19723 1.19273 0.94340 0.92531 0.89751 1.21606 1.02492 1.00772 0.92455 1.21202 0.94355 0.94351 0.99465 1.17408 0.97706 0.94852 0.87039 1.43135 1.63409 1.11115 1.12223 1.17458 0.75785 0.86709 0.82216 1.90885 1.54077 1.14853 1.83423 1.24351 1.19853 0.99909 0.98720 1.21043 0.94868 1.02175 0.90865 1.20235 1.05415 0.91324 1.02321 1.25850 1.05185 1.02932 1.01048 1.82781 1.59417 0.97587 1.08145 1.21240 0.97776 1.00902 0.88369 1.18916 1.04263 0.97053 0.91035 1.20550 0.75529 0.78339 0.89369 1.91048 1.48298 1.55107 1.44386 1.84464 1.67791 1.41292 1.38622 0.95804 0.91537 0.91059 1.00803 0.99210 0.92631 0.86066 0.84648 0.73486 0.83822 0.81481 0.78016 0.80399 0.70994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.12 9.19 127.69 1.17 3.29 16 2 N -0.51 -24.38 2.64 -723.58 -1.91 -26.30 16 3 C 0.22 12.93 4.30 85.56 0.37 13.30 16 4 C -0.52 -31.48 8.46 25.60 0.22 -31.27 16 5 H 0.06 3.75 7.12 -2.91 -0.02 3.73 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.93 -59.09 13.29 21.45 0.28 -58.81 16 8 Si 0.97 46.74 29.54 68.60 2.03 48.76 16 9 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.14 5.67 4.68 38.69 0.18 5.85 16 13 C -0.15 -5.82 8.63 22.36 0.19 -5.62 16 14 C -0.07 -2.38 8.63 22.42 0.19 -2.19 16 15 C 0.12 3.33 6.27 38.07 0.24 3.57 16 16 N -0.65 -13.27 5.33 -307.17 -1.64 -14.91 16 17 C 0.59 14.38 7.51 86.41 0.65 15.03 16 18 O -0.55 -18.65 14.53 -4.41 -0.06 -18.71 16 19 C -0.31 -5.44 6.45 24.07 0.16 -5.29 16 20 C -0.05 -0.90 10.01 21.72 0.22 -0.68 16 21 C -0.16 -1.66 10.15 21.08 0.21 -1.44 16 22 C -0.21 -1.47 10.92 66.81 0.73 -0.74 16 23 S 0.25 2.20 22.17 -56.49 -1.25 0.95 16 24 C -0.06 -1.62 9.52 22.66 0.22 -1.41 16 25 C -0.11 -3.83 5.89 -20.00 -0.12 -3.95 16 26 C 0.52 18.05 8.26 70.20 0.58 18.63 16 27 O -0.50 -22.26 15.80 19.73 0.31 -21.95 16 28 O -0.51 -11.66 12.68 -56.75 -0.72 -12.38 16 29 H 0.02 0.94 7.33 -2.39 -0.02 0.93 16 30 H 0.07 2.97 6.76 -2.39 -0.02 2.96 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H -0.03 -1.55 7.46 -2.39 -0.02 -1.57 16 33 H -0.01 -0.66 8.06 -2.39 -0.02 -0.68 16 34 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.12 4.85 7.11 -2.92 -0.02 4.83 16 36 H 0.14 4.42 6.41 -2.91 -0.02 4.40 16 37 H 0.43 5.21 7.94 -92.71 -0.74 4.48 16 38 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.20 0.09 8.06 -2.91 -0.02 0.07 16 41 H 0.18 3.20 7.61 -2.91 -0.02 3.18 16 42 H 0.43 6.12 9.11 -74.06 -0.67 5.44 16 Total: -1.00 -85.14 377.16 2.40 -82.74 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -0.30 Total: 13.05 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.67 Total: 7.55 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.27 Total: -100.01 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.47 Total: -53.04 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.25 Total: 0.95 kcal Total: -85.14 2.40 -82.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046053421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.240 kcal (2) G-P(sol) polarization free energy of solvation -85.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds