Wall clock time and date at job start Tue Mar 31 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86792 * 120.00235 * 2 1 4 4 H 1.48505 * 109.46966 * 274.90217 * 3 2 1 5 5 H 1.48501 * 109.47070 * 34.89977 * 3 2 1 6 6 H 1.48501 * 109.47559 * 154.90201 * 3 2 1 7 7 C 1.39899 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99818 * 198.29842 * 7 2 1 9 9 C 1.41216 * 119.99913 * 18.29717 * 7 2 1 10 10 C 1.40830 * 120.18004 * 25.90199 * 9 7 2 11 11 C 1.36434 * 119.80768 * 180.23156 * 10 9 7 12 12 C 1.39305 * 120.18927 * 359.49666 * 11 10 9 13 13 O 1.35671 * 119.82460 * 180.27731 * 12 11 10 14 14 C 1.42896 * 117.00685 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47564 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47467 * 54.99909 * 15 14 13 17 17 O 1.42904 * 109.47224 * 295.00238 * 15 14 13 18 18 C 1.53000 * 109.47399 * 175.00198 * 15 14 13 19 19 N 1.46900 * 109.47132 * 182.45224 * 18 15 14 20 20 C 1.46989 * 110.99768 * 73.28586 * 19 18 15 21 21 C 1.53347 * 109.09021 * 52.29750 * 20 19 18 22 22 C 1.51407 * 108.07437 * 48.83370 * 21 20 19 23 23 S 1.75593 * 125.99963 * 164.43275 * 22 21 20 24 24 C 1.75785 * 91.04534 * 180.09482 * 23 22 21 25 25 C 1.33030 * 109.60225 * 359.97438 * 24 23 22 26 26 C 1.34804 * 123.95897 * 344.48023 * 22 21 20 27 27 C 1.46910 * 110.99908 * 197.63220 * 19 18 15 28 28 C 1.39316 * 120.36514 * 0.26201 * 12 11 10 29 29 C 1.36442 * 120.18028 * 359.97438 * 28 12 11 30 30 H 0.96995 * 120.00012 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.09798 * 0.02562 * 10 9 7 32 32 H 1.08009 * 119.90423 * 179.77664 * 11 10 9 33 33 H 1.09002 * 109.47494 * 300.00341 * 14 13 12 34 34 H 1.08999 * 109.47258 * 59.99894 * 14 13 12 35 35 H 0.96703 * 113.99754 * 299.99544 * 17 15 14 36 36 H 1.09001 * 109.46980 * 302.44771 * 18 15 14 37 37 H 1.08997 * 109.47298 * 62.44994 * 18 15 14 38 38 H 1.09007 * 109.53107 * 172.18005 * 20 19 18 39 39 H 1.08997 * 109.53058 * 292.33328 * 20 19 18 40 40 H 1.09001 * 109.74500 * 168.48181 * 21 20 19 41 41 H 1.09006 * 109.73914 * 289.14386 * 21 20 19 42 42 H 1.07998 * 125.19930 * 179.97438 * 24 23 22 43 43 H 1.08001 * 122.16520 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.60499 * 48.21225 * 27 19 18 45 45 H 1.09000 * 109.60490 * 168.72429 * 27 19 18 46 46 H 1.07993 * 119.91155 * 180.02562 * 28 12 11 47 47 H 1.08000 * 120.08820 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.3867 2.1061 -1.3950 5 1 1.4959 2.6205 0.8010 6 1 3.5884 1.4124 0.5939 7 6 2.0083 -1.2116 0.0005 8 1 3.0473 -1.2351 0.2942 9 6 1.3557 -2.4038 -0.3829 10 6 0.2487 -2.3569 -1.2522 11 6 -0.3790 -3.5130 -1.6139 12 6 0.0786 -4.7382 -1.1343 13 8 -0.5478 -5.8837 -1.5032 14 6 -0.0287 -7.1060 -0.9755 15 6 -0.8575 -8.2805 -1.4994 16 1 -0.8796 -8.2523 -2.5888 17 8 -2.1906 -8.1862 -0.9934 18 6 -0.2280 -9.5958 -1.0361 19 7 -0.9897 -10.7243 -1.5877 20 6 -0.7331 -10.8798 -3.0266 21 6 0.7808 -10.9435 -3.2620 22 6 1.3652 -11.9481 -2.2916 23 16 2.9609 -12.6739 -2.3936 24 6 2.6671 -13.6028 -0.9304 25 6 1.4499 -13.3322 -0.4668 26 6 0.7132 -12.4160 -1.2085 27 6 -0.6975 -11.9644 -0.8563 28 6 1.1761 -4.7938 -0.2780 29 6 1.8121 -3.6465 0.0973 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1044 -1.4082 -1.6288 32 1 -1.2304 -3.4785 -2.2777 33 1 1.0086 -7.2255 -1.2885 34 1 -0.0792 -7.0822 0.1131 35 1 -2.2471 -8.2052 -0.0282 36 1 0.8031 -9.6481 -1.3856 37 1 -0.2454 -9.6433 0.0527 38 1 -1.1964 -11.8003 -3.3820 39 1 -1.1515 -10.0296 -3.5653 40 1 0.9813 -11.2606 -4.2855 41 1 1.2222 -9.9622 -3.0876 42 1 3.3677 -14.2885 -0.4772 43 1 1.0598 -13.7941 0.4281 44 1 -0.7660 -11.7814 0.2161 45 1 -1.4113 -12.7360 -1.1446 46 1 1.5249 -5.7476 0.0892 47 1 2.6630 -3.6914 0.7609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048235794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:12 Heat of formation + Delta-G solvation = -25.914350 kcal Electronic energy + Delta-G solvation = -28666.690595 eV Core-core repulsion = 24713.120969 eV Total energy + Delta-G solvation = -3953.569626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.43543 -38.92567 -37.49930 -36.33745 -35.66991 -33.30091 -32.14248 -30.93980 -29.81518 -29.28984 -28.93508 -26.65121 -24.77205 -24.10780 -23.99660 -22.30113 -20.93621 -20.58927 -20.53052 -18.58714 -17.69185 -17.33849 -16.94683 -16.67881 -16.16885 -15.71265 -15.39701 -15.21132 -15.07431 -14.85571 -14.10355 -14.01893 -13.90687 -13.86831 -13.36176 -13.31236 -13.02303 -12.83735 -12.37685 -12.28487 -12.14534 -12.11490 -11.86229 -11.80976 -11.72955 -11.40050 -11.26775 -11.15206 -11.09277 -10.93658 -10.76203 -10.58640 -9.97158 -9.89519 -9.80097 -9.32257 -9.02855 -8.91830 -8.67865 -8.56896 -7.64413 -7.01979 -6.71823 -4.25068 0.63946 1.28763 1.66912 2.30975 2.78178 2.94876 3.09261 3.12883 3.21466 3.39967 3.95936 4.09605 4.31004 4.44409 4.50983 4.62460 4.63080 4.73394 4.81377 4.97711 5.01275 5.11270 5.12801 5.22336 5.28412 5.35725 5.38212 5.42049 5.58483 5.61942 5.66244 5.69340 5.74170 5.92970 6.03903 6.06242 6.14944 6.23062 6.67107 6.72178 6.74471 6.97835 7.11579 7.18802 7.45685 7.56059 7.78702 7.80446 8.01190 8.20283 8.45629 8.65868 8.90398 8.99114 10.23339 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.001807 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.060748 B =15492.208532 C =16350.431595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.089 3.911 10 C -0.132 4.132 11 C -0.119 4.119 12 C -0.008 4.008 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.119 3.881 16 H 0.103 0.897 17 O -0.539 6.539 18 C 0.019 3.981 19 N -0.516 5.516 20 C 0.058 3.942 21 C -0.090 4.090 22 C -0.179 4.179 23 S 0.099 5.901 24 C -0.217 4.217 25 C -0.122 4.122 26 C -0.145 4.145 27 C 0.119 3.881 28 C -0.168 4.168 29 C -0.198 4.198 30 H 0.280 0.720 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.370 0.630 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.164 0.836 43 H 0.138 0.862 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 -25.067 -2.953 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.087 3.913 10 C -0.152 4.152 11 C -0.138 4.138 12 C -0.051 4.051 13 O -0.232 6.232 14 C -0.039 4.039 15 C 0.059 3.941 16 H 0.121 0.879 17 O -0.343 6.343 18 C -0.109 4.109 19 N -0.236 5.236 20 C -0.072 4.072 21 C -0.131 4.131 22 C -0.296 4.296 23 S 0.365 5.635 24 C -0.353 4.353 25 C -0.153 4.153 26 C -0.159 4.159 27 C -0.012 4.012 28 C -0.187 4.187 29 C -0.218 4.218 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.216 0.784 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.181 0.819 43 H 0.156 0.844 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.379 -24.679 -4.631 25.147 hybrid contribution 0.781 0.223 1.827 1.999 sum 2.160 -24.456 -2.804 24.710 Atomic orbital electron populations 1.69840 1.07489 1.29136 1.35977 1.25875 0.94714 1.01192 0.92399 0.86324 0.80556 0.80867 0.79086 1.19397 1.20372 1.18691 1.19458 0.98230 0.91268 1.40592 0.90554 1.17590 0.91804 0.92117 0.89829 1.20927 0.98717 0.96206 0.99319 1.19834 1.00912 0.90243 1.02773 1.18615 0.97189 0.84903 1.04385 1.85884 1.55825 1.12111 1.69394 1.23115 0.97411 0.85267 0.98150 1.21808 0.82692 0.89744 0.99855 0.87949 1.86633 1.25656 1.96269 1.25718 1.22855 0.96486 0.91168 1.00393 1.62139 1.55488 1.03155 1.02825 1.22310 0.92320 1.03483 0.89074 1.21018 0.97848 0.96796 0.97399 1.24794 0.97862 1.05342 1.01630 1.84230 1.14735 1.39145 1.25410 1.25421 1.01493 1.07131 1.01212 1.19961 0.94060 0.99660 1.01649 1.20493 0.99606 0.99933 0.95836 1.21285 0.89452 0.91493 0.98951 1.20395 0.98294 0.97709 1.02304 1.20568 1.03421 0.92578 1.05207 0.90927 0.85927 0.88404 0.92753 0.92944 0.78390 0.92583 0.90282 0.90104 0.89105 0.89666 0.89554 0.81888 0.84409 0.89359 0.89032 0.89009 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.83 11.08 55.55 0.62 -20.21 16 2 C 0.08 1.90 5.11 -17.34 -0.09 1.81 16 3 Si 0.91 18.79 29.60 -169.99 -5.03 13.75 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.47 -12.41 9.03 -37.83 -0.34 -12.75 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.09 2.39 5.56 -106.81 -0.59 1.79 16 10 C -0.13 -3.48 8.63 -39.25 -0.34 -3.82 16 11 C -0.12 -2.91 9.92 -39.84 -0.40 -3.30 16 12 C -0.01 -0.18 6.71 -38.78 -0.26 -0.44 16 13 O -0.32 -6.49 10.09 -23.56 -0.24 -6.73 16 14 C 0.04 0.58 4.36 37.16 0.16 0.74 16 15 C 0.12 1.48 3.29 -26.73 -0.09 1.40 16 16 H 0.10 1.33 6.90 -51.93 -0.36 0.98 16 17 O -0.54 -7.39 13.21 -40.08 -0.53 -7.92 16 18 C 0.02 0.19 4.02 -3.82 -0.02 0.17 16 19 N -0.52 -4.73 4.80 -234.79 -1.13 -5.86 16 20 C 0.06 0.49 5.72 -3.60 -0.02 0.46 16 21 C -0.09 -0.74 5.69 -27.36 -0.16 -0.90 16 22 C -0.18 -1.63 5.76 -35.18 -0.20 -1.83 16 23 S 0.10 0.85 23.32 -107.50 -2.51 -1.66 16 24 C -0.22 -1.69 11.21 28.92 0.32 -1.37 16 25 C -0.12 -0.97 10.02 -41.10 -0.41 -1.39 16 26 C -0.14 -1.26 5.47 -104.78 -0.57 -1.83 16 27 C 0.12 0.94 6.03 -4.20 -0.03 0.91 16 28 C -0.17 -3.81 8.96 -39.83 -0.36 -4.16 16 29 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.12 3.29 6.28 -52.49 -0.33 2.96 16 32 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.05 0.80 7.64 -51.93 -0.40 0.40 16 34 H 0.05 0.77 7.65 -51.93 -0.40 0.38 16 35 H 0.37 3.92 9.05 45.56 0.41 4.33 16 36 H 0.06 0.57 5.19 -51.93 -0.27 0.30 16 37 H 0.08 0.73 7.75 -51.93 -0.40 0.32 16 38 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 39 H 0.09 0.79 7.03 -51.93 -0.37 0.42 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.76 6.70 -51.93 -0.35 0.42 16 42 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.09 0.63 7.81 -51.93 -0.41 0.22 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 47 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -30.32 389.71 -12.40 -42.72 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.69 Total: 9.80 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -3.76 Total: -29.77 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: -0.51 Total: -26.07 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.77 Total: -14.65 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.32 -12.40 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048235794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.806 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds