Wall clock time and date at job start Tue Mar 31 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47007 * 299.99459 * 3 2 1 6 6 H 1.48495 * 109.47583 * 59.99237 * 3 2 1 7 7 C 1.39884 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 196.79670 * 7 2 1 9 9 C 1.41209 * 120.00057 * 16.78975 * 7 2 1 10 10 C 1.40838 * 120.17971 * 25.18211 * 9 7 2 11 11 C 1.36433 * 119.81408 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.18756 * 359.97438 * 11 10 9 13 13 O 1.35670 * 119.81909 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99781 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46747 * 304.99590 * 15 14 13 17 17 O 1.42900 * 109.47416 * 65.00063 * 15 14 13 18 18 C 1.53003 * 109.47063 * 185.00147 * 15 14 13 19 19 N 1.46899 * 109.46991 * 179.44966 * 18 15 14 20 20 C 1.46978 * 111.00441 * 287.90786 * 19 18 15 21 21 C 1.53350 * 109.09797 * 163.95619 * 20 19 18 22 22 C 1.51409 * 108.07910 * 48.80528 * 21 20 19 23 23 S 1.75593 * 125.99535 * 164.46858 * 22 21 20 24 24 C 1.75788 * 91.04097 * 180.02562 * 23 22 21 25 25 C 1.33023 * 109.60566 * 359.97438 * 24 23 22 26 26 C 1.34798 * 123.95958 * 344.50910 * 22 21 20 27 27 C 1.46906 * 110.99701 * 163.56683 * 19 18 15 28 28 C 1.39315 * 120.35926 * 0.25294 * 12 11 10 29 29 C 1.36434 * 120.18968 * 359.49094 * 28 12 11 30 30 H 0.97010 * 119.99993 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.09048 * 359.97438 * 10 9 7 32 32 H 1.07995 * 119.91051 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47434 * 60.00158 * 14 13 12 34 34 H 1.08999 * 109.47534 * 300.00037 * 14 13 12 35 35 H 0.96697 * 113.99746 * 59.99659 * 17 15 14 36 36 H 1.08996 * 109.47288 * 299.45113 * 18 15 14 37 37 H 1.09007 * 109.47404 * 59.45207 * 18 15 14 38 38 H 1.09007 * 109.53627 * 283.83292 * 20 19 18 39 39 H 1.09004 * 109.53108 * 44.06460 * 20 19 18 40 40 H 1.08999 * 109.72207 * 289.16738 * 21 20 19 41 41 H 1.09002 * 109.79690 * 168.48630 * 21 20 19 42 42 H 1.08002 * 125.19976 * 179.97438 * 24 23 22 43 43 H 1.07999 * 122.16979 * 180.02562 * 25 24 23 44 44 H 1.09006 * 109.61142 * 296.58506 * 27 19 18 45 45 H 1.08996 * 109.61225 * 57.09813 * 27 19 18 46 46 H 1.08005 * 119.90393 * 179.71829 * 28 12 11 47 47 H 1.07999 * 120.09961 * 180.25335 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8839 2.3966 1.2123 7 6 2.0082 -1.2114 0.0005 8 1 3.0536 -1.2312 0.2708 9 6 1.3473 -2.4084 -0.3522 10 6 0.2117 -2.3715 -1.1844 11 6 -0.4214 -3.5325 -1.5200 12 6 0.0528 -4.7523 -1.0425 13 8 -0.5828 -5.9023 -1.3805 14 6 -0.0450 -7.1186 -0.8577 15 6 -0.8877 -8.2994 -1.3439 16 1 -1.9316 -8.1353 -1.0763 17 8 -0.7723 -8.4144 -2.7636 18 6 -0.3889 -9.5873 -0.6856 19 7 -1.2065 -10.7191 -1.1424 20 6 -2.5501 -10.6719 -0.5485 21 6 -3.4795 -11.6039 -1.3354 22 6 -2.7835 -12.9395 -1.4913 23 16 -3.5433 -14.4501 -1.9647 24 6 -2.0062 -15.2956 -1.8520 25 6 -1.0536 -14.4429 -1.4845 26 6 -1.4663 -13.1314 -1.2791 27 6 -0.5416 -11.9977 -0.8573 28 6 1.1727 -4.7972 -0.2150 29 6 1.8204 -3.6459 0.1259 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1574 -1.4266 -1.5551 32 1 -1.2925 -3.5059 -2.1578 33 1 -0.0611 -7.0844 0.2317 34 1 0.9821 -7.2395 -1.2022 35 1 0.1315 -8.5620 -3.0740 36 1 0.6520 -9.7565 -0.9610 37 1 -0.4679 -9.4959 0.3977 38 1 -2.5011 -10.9985 0.4904 39 1 -2.9329 -9.6523 -0.5935 40 1 -3.6822 -11.1774 -2.3178 41 1 -4.4149 -11.7374 -0.7920 42 1 -1.8579 -16.3468 -2.0507 43 1 -0.0264 -14.7497 -1.3538 44 1 0.3909 -12.0582 -1.4184 45 1 -0.3346 -12.0723 0.2102 46 1 1.5313 -5.7465 0.1548 47 1 2.6908 -3.6827 0.7642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048235795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:16 Heat of formation + Delta-G solvation = -28.383693 kcal Electronic energy + Delta-G solvation = -28117.814110 eV Core-core repulsion = 24164.137405 eV Total energy + Delta-G solvation = -3953.676704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.94264 -38.94972 -37.64225 -36.36366 -35.65814 -33.31170 -32.72980 -30.79872 -29.84795 -29.26788 -28.88340 -26.43263 -24.78755 -24.11906 -23.90489 -22.17716 -21.07645 -20.63275 -20.56107 -18.44407 -17.61170 -17.35006 -17.05515 -16.53513 -16.20645 -15.77766 -15.41259 -15.19209 -14.98907 -14.82800 -14.41479 -14.06565 -13.93787 -13.62538 -13.42005 -13.22381 -12.99589 -12.84996 -12.58670 -12.25726 -12.19910 -12.13721 -11.98209 -11.77388 -11.52891 -11.41138 -11.35312 -11.15109 -10.92852 -10.89241 -10.71706 -10.60927 -10.00481 -9.89756 -9.81445 -9.33571 -9.03479 -8.84491 -8.75798 -8.46448 -7.64795 -7.02528 -6.71763 -4.26145 0.71681 1.32877 1.70905 2.36729 2.76726 2.94615 3.08892 3.13959 3.20003 3.28962 3.95205 4.03492 4.37763 4.40798 4.52895 4.62595 4.71844 4.81625 4.92329 4.97875 5.01678 5.03185 5.12700 5.20076 5.27774 5.31922 5.37704 5.41709 5.51038 5.60925 5.66718 5.69326 5.76215 5.96764 6.02061 6.05198 6.21927 6.22384 6.67210 6.72074 6.74627 6.97366 7.10880 7.18523 7.46221 7.55522 7.77708 7.79088 8.00625 8.20392 8.45120 8.65336 8.90003 8.98433 10.22716 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.040205 B = 0.001455 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.269383 B =19243.723233 C =19584.557194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.132 4.132 11 C -0.119 4.119 12 C -0.008 4.008 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.118 3.882 16 H 0.103 0.897 17 O -0.538 6.538 18 C 0.026 3.974 19 N -0.525 5.525 20 C 0.056 3.944 21 C -0.043 4.043 22 C -0.164 4.164 23 S 0.094 5.906 24 C -0.219 4.219 25 C -0.122 4.122 26 C -0.112 4.112 27 C 0.121 3.879 28 C -0.169 4.169 29 C -0.198 4.198 30 H 0.279 0.721 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.370 0.630 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.163 0.837 43 H 0.138 0.862 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -25.966 -1.136 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.151 4.151 11 C -0.138 4.138 12 C -0.051 4.051 13 O -0.232 6.232 14 C -0.040 4.040 15 C 0.058 3.942 16 H 0.121 0.879 17 O -0.341 6.341 18 C -0.102 4.102 19 N -0.249 5.249 20 C -0.073 4.073 21 C -0.083 4.083 22 C -0.281 4.281 23 S 0.359 5.641 24 C -0.355 4.355 25 C -0.152 4.152 26 C -0.124 4.124 27 C -0.009 4.009 28 C -0.188 4.188 29 C -0.217 4.217 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.216 0.784 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.181 0.819 43 H 0.155 0.845 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.787 -26.176 -2.103 27.123 hybrid contribution 2.753 0.783 1.548 3.254 sum -4.035 -25.393 -0.555 25.717 Atomic orbital electron populations 1.69835 1.07482 1.28998 1.36344 1.25871 0.94734 1.01210 0.92411 0.86285 0.80926 0.81120 0.78504 1.18504 1.19742 1.20099 1.19486 0.97673 0.91087 1.41092 0.90553 1.17611 0.91932 0.92143 0.89851 1.20997 0.98333 0.96267 0.99526 1.19850 1.00810 0.90284 1.02892 1.18627 0.96781 0.84814 1.04882 1.85888 1.53967 1.12170 1.71188 1.23116 0.97174 0.85363 0.98313 1.21836 1.00669 0.89776 0.81923 0.87885 1.86641 1.32833 1.94924 1.19729 1.22716 0.97938 0.91265 0.98278 1.61740 1.02393 1.01256 1.59537 1.22203 0.89125 1.00383 0.95588 1.20386 0.96867 0.88920 1.02090 1.24833 0.97032 0.98685 1.07578 1.84148 1.11249 1.00306 1.68356 1.25344 0.95818 1.03628 1.10672 1.19885 1.00670 0.92127 1.02560 1.19518 0.93414 0.94704 1.04761 1.20971 0.95492 0.85779 0.98629 1.20391 0.97940 0.97731 1.02729 1.20559 1.02957 0.92611 1.05616 0.90988 0.85613 0.88416 0.92597 0.92902 0.78404 0.89915 0.93259 0.94204 0.89380 0.89043 0.90121 0.81905 0.84474 0.89224 0.93467 0.88974 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 10.93 55.54 0.61 -20.14 16 2 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.29 9.04 -37.84 -0.34 -12.63 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.09 2.32 5.57 -106.80 -0.59 1.73 16 10 C -0.13 -3.45 8.64 -39.25 -0.34 -3.79 16 11 C -0.12 -2.91 9.92 -39.83 -0.40 -3.31 16 12 C -0.01 -0.18 6.71 -38.78 -0.26 -0.44 16 13 O -0.32 -6.42 10.09 -23.56 -0.24 -6.65 16 14 C 0.04 0.56 4.36 37.16 0.16 0.72 16 15 C 0.12 1.43 3.26 -26.73 -0.09 1.35 16 16 H 0.10 1.33 6.54 -51.93 -0.34 0.99 16 17 O -0.54 -7.28 13.18 -40.08 -0.53 -7.81 16 18 C 0.03 0.24 4.64 -3.82 -0.02 0.22 16 19 N -0.53 -5.02 4.43 -234.79 -1.04 -6.06 16 20 C 0.06 0.51 5.40 -3.60 -0.02 0.49 16 21 C -0.04 -0.38 6.50 -27.35 -0.18 -0.55 16 22 C -0.16 -1.55 6.42 -35.18 -0.23 -1.78 16 23 S 0.09 0.77 23.32 -107.50 -2.51 -1.73 16 24 C -0.22 -1.67 11.21 28.92 0.32 -1.34 16 25 C -0.12 -0.98 10.02 -41.10 -0.41 -1.40 16 26 C -0.11 -1.04 5.85 -104.78 -0.61 -1.65 16 27 C 0.12 1.03 5.63 -4.20 -0.02 1.00 16 28 C -0.17 -3.78 8.96 -39.83 -0.36 -4.13 16 29 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 30 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 31 H 0.13 3.37 6.16 -52.48 -0.32 3.05 16 32 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.06 0.79 7.63 -51.93 -0.40 0.40 16 34 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 35 H 0.37 3.84 9.04 45.56 0.41 4.25 16 36 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 37 H 0.05 0.42 8.05 -51.93 -0.42 0.00 16 38 H 0.04 0.34 8.06 -51.92 -0.42 -0.08 16 39 H 0.09 0.80 6.30 -51.93 -0.33 0.47 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 1.76 6.27 -52.48 -0.33 1.43 16 47 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -30.42 394.60 -12.52 -42.94 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.88 Total: 8.81 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -3.85 Total: -28.96 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: -0.43 Total: -26.20 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.77 Total: -14.46 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.42 -12.52 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048235795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.561 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds