Wall clock time and date at job start Tue Mar 31 2020 05:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47007 * 299.99459 * 3 2 1 6 6 H 1.48495 * 109.47583 * 59.99237 * 3 2 1 7 7 C 1.39884 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 196.79670 * 7 2 1 9 9 C 1.41209 * 120.00057 * 16.78975 * 7 2 1 10 10 C 1.40838 * 120.17971 * 25.18211 * 9 7 2 11 11 C 1.36433 * 119.81408 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.18756 * 359.97438 * 11 10 9 13 13 O 1.35670 * 119.81909 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99781 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46747 * 304.99590 * 15 14 13 17 17 O 1.42900 * 109.47416 * 65.00063 * 15 14 13 18 18 C 1.53003 * 109.47063 * 185.00147 * 15 14 13 19 19 N 1.46899 * 109.46991 * 179.44966 * 18 15 14 20 20 C 1.46978 * 111.00441 * 287.90786 * 19 18 15 21 21 C 1.53350 * 109.09797 * 163.95619 * 20 19 18 22 22 C 1.51409 * 108.07910 * 48.80528 * 21 20 19 23 23 S 1.75593 * 125.99535 * 164.46858 * 22 21 20 24 24 C 1.75788 * 91.04097 * 180.02562 * 23 22 21 25 25 C 1.33023 * 109.60566 * 359.97438 * 24 23 22 26 26 C 1.34798 * 123.95958 * 344.50910 * 22 21 20 27 27 C 1.46906 * 110.99701 * 163.56683 * 19 18 15 28 28 C 1.39315 * 120.35926 * 0.25294 * 12 11 10 29 29 C 1.36434 * 120.18968 * 359.49094 * 28 12 11 30 30 H 0.97010 * 119.99993 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.09048 * 359.97438 * 10 9 7 32 32 H 1.07995 * 119.91051 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47434 * 60.00158 * 14 13 12 34 34 H 1.08999 * 109.47534 * 300.00037 * 14 13 12 35 35 H 0.96697 * 113.99746 * 59.99659 * 17 15 14 36 36 H 1.08996 * 109.47288 * 299.45113 * 18 15 14 37 37 H 1.09007 * 109.47404 * 59.45207 * 18 15 14 38 38 H 1.09007 * 109.53627 * 283.83292 * 20 19 18 39 39 H 1.09004 * 109.53108 * 44.06460 * 20 19 18 40 40 H 1.08999 * 109.72207 * 289.16738 * 21 20 19 41 41 H 1.09002 * 109.79690 * 168.48630 * 21 20 19 42 42 H 1.08002 * 125.19976 * 179.97438 * 24 23 22 43 43 H 1.07999 * 122.16979 * 180.02562 * 25 24 23 44 44 H 1.09006 * 109.61142 * 296.58506 * 27 19 18 45 45 H 1.08996 * 109.61225 * 57.09813 * 27 19 18 46 46 H 1.08005 * 119.90393 * 179.71829 * 28 12 11 47 47 H 1.07999 * 120.09961 * 180.25335 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8839 2.3966 1.2123 7 6 2.0082 -1.2114 0.0005 8 1 3.0536 -1.2312 0.2708 9 6 1.3473 -2.4084 -0.3522 10 6 0.2117 -2.3715 -1.1844 11 6 -0.4214 -3.5325 -1.5200 12 6 0.0528 -4.7523 -1.0425 13 8 -0.5828 -5.9023 -1.3805 14 6 -0.0450 -7.1186 -0.8577 15 6 -0.8877 -8.2994 -1.3439 16 1 -1.9316 -8.1353 -1.0763 17 8 -0.7723 -8.4144 -2.7636 18 6 -0.3889 -9.5873 -0.6856 19 7 -1.2065 -10.7191 -1.1424 20 6 -2.5501 -10.6719 -0.5485 21 6 -3.4795 -11.6039 -1.3354 22 6 -2.7835 -12.9395 -1.4913 23 16 -3.5433 -14.4501 -1.9647 24 6 -2.0062 -15.2956 -1.8520 25 6 -1.0536 -14.4429 -1.4845 26 6 -1.4663 -13.1314 -1.2791 27 6 -0.5416 -11.9977 -0.8573 28 6 1.1727 -4.7972 -0.2150 29 6 1.8204 -3.6459 0.1259 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1574 -1.4266 -1.5551 32 1 -1.2925 -3.5059 -2.1578 33 1 -0.0611 -7.0844 0.2317 34 1 0.9821 -7.2395 -1.2022 35 1 0.1315 -8.5620 -3.0740 36 1 0.6520 -9.7565 -0.9610 37 1 -0.4679 -9.4959 0.3977 38 1 -2.5011 -10.9985 0.4904 39 1 -2.9329 -9.6523 -0.5935 40 1 -3.6822 -11.1774 -2.3178 41 1 -4.4149 -11.7374 -0.7920 42 1 -1.8579 -16.3468 -2.0507 43 1 -0.0264 -14.7497 -1.3538 44 1 0.3909 -12.0582 -1.4184 45 1 -0.3346 -12.0723 0.2102 46 1 1.5313 -5.7465 0.1548 47 1 2.6908 -3.6827 0.7642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048235795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:15 Heat of formation + Delta-G solvation = -46.466759 kcal Electronic energy + Delta-G solvation = -28118.598250 eV Core-core repulsion = 24164.137405 eV Total energy + Delta-G solvation = -3954.460845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.80418 -40.35364 -38.81357 -37.75981 -36.60377 -35.16448 -33.44028 -32.01183 -31.32397 -30.85505 -30.00236 -27.46861 -26.45606 -24.92842 -24.67147 -23.28715 -22.52045 -22.18447 -21.66097 -19.24790 -19.12469 -18.62804 -18.20854 -17.53435 -17.33998 -17.03777 -16.58684 -16.13670 -15.80168 -15.76878 -15.66286 -15.57041 -15.19773 -14.88693 -14.52440 -14.06584 -14.06143 -13.93134 -13.87335 -13.65271 -13.52714 -13.25464 -13.01371 -12.87972 -12.79482 -12.64741 -12.56099 -12.37533 -12.14783 -12.12640 -11.78660 -11.63450 -11.56732 -11.51829 -11.18813 -10.90931 -10.86796 -9.55236 -9.47035 -9.42050 -9.11565 -8.90463 -8.58148 -6.22371 0.09509 0.71863 0.95395 1.03627 1.10519 1.40463 1.51485 1.55499 1.75390 2.23452 2.33499 2.73846 2.96991 3.57560 3.70209 3.71129 3.80369 3.96355 4.01355 4.04927 4.12905 4.29341 4.30143 4.35782 4.39408 4.40251 4.46702 4.48569 4.54752 4.67002 4.70589 4.77805 4.84832 4.88075 5.01419 5.05458 5.09058 5.14734 5.22881 5.29564 5.37594 5.59887 5.60653 5.65529 5.89267 5.99608 6.06798 6.07415 6.27477 6.57911 6.82005 6.93699 6.96214 7.11615 8.38531 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.040205 B = 0.001455 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.269383 B =19243.723233 C =19584.557194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.151 4.151 11 C -0.136 4.136 12 C 0.003 3.997 13 O -0.331 6.331 14 C 0.029 3.971 15 C 0.127 3.873 16 H 0.092 0.908 17 O -0.558 6.558 18 C 0.036 3.964 19 N -0.538 5.538 20 C 0.056 3.944 21 C -0.042 4.042 22 C -0.187 4.187 23 S 0.086 5.914 24 C -0.217 4.217 25 C -0.133 4.133 26 C -0.121 4.121 27 C 0.122 3.878 28 C -0.165 4.165 29 C -0.206 4.206 30 H 0.287 0.713 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.382 0.618 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.186 0.814 43 H 0.157 0.843 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.131 0.869 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 -27.716 -0.596 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.050 3.950 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.041 4.041 13 O -0.247 6.247 14 C -0.047 4.047 15 C 0.067 3.933 16 H 0.110 0.890 17 O -0.364 6.364 18 C -0.092 4.092 19 N -0.262 5.262 20 C -0.073 4.073 21 C -0.081 4.081 22 C -0.304 4.304 23 S 0.352 5.648 24 C -0.352 4.352 25 C -0.163 4.163 26 C -0.134 4.134 27 C -0.007 4.007 28 C -0.184 4.184 29 C -0.225 4.225 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.203 0.797 43 H 0.174 0.826 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.149 0.851 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.569 -27.960 -1.565 28.553 hybrid contribution 2.307 1.097 1.345 2.887 sum -3.262 -26.863 -0.221 27.062 Atomic orbital electron populations 1.69894 1.08966 1.30325 1.36918 1.26731 0.95490 1.04487 0.91407 0.85161 0.79423 0.76313 0.78799 1.18103 1.19076 1.19210 1.19733 0.97920 0.92240 1.42961 0.90569 1.17973 0.92724 0.93456 0.90811 1.20902 0.99206 0.96312 1.00640 1.20012 1.01215 0.90820 1.03445 1.18691 0.96386 0.85464 1.03560 1.85883 1.54350 1.12917 1.71540 1.23514 0.98434 0.83690 0.99078 1.21768 0.99762 0.90194 0.81581 0.89050 1.86611 1.34235 1.94993 1.20591 1.22588 0.98562 0.89562 0.98476 1.61692 1.02648 1.01823 1.60033 1.22197 0.89132 1.00118 0.95847 1.20360 0.97403 0.88803 1.01563 1.24999 0.97554 0.99204 1.08659 1.84143 1.12059 1.00211 1.68423 1.25690 0.95071 1.04674 1.09759 1.20122 1.01792 0.91721 1.02669 1.19801 0.93490 0.95531 1.04554 1.21019 0.95516 0.84887 0.99295 1.20708 0.97143 0.98726 1.01807 1.20815 1.03475 0.92625 1.05616 0.90287 0.87321 0.87674 0.91418 0.91344 0.76910 0.88142 0.92162 0.93710 0.89889 0.90294 0.89038 0.79689 0.82551 0.88220 0.92589 0.85120 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.37 10.93 21.82 0.24 -44.13 16 2 C 0.03 1.65 5.15 85.23 0.44 2.09 16 3 Si 0.98 38.56 29.59 68.60 2.03 40.59 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.50 -27.06 9.04 23.40 0.21 -26.84 16 8 H 0.08 3.97 7.90 -2.91 -0.02 3.94 16 9 C 0.05 2.86 5.57 -21.28 -0.12 2.75 16 10 C -0.15 -8.18 8.64 22.48 0.19 -7.99 16 11 C -0.14 -6.75 9.92 22.11 0.22 -6.53 16 12 C 0.00 0.13 6.71 22.79 0.15 0.28 16 13 O -0.33 -12.94 10.09 -85.24 -0.86 -13.80 16 14 C 0.03 0.79 4.36 71.98 0.31 1.10 16 15 C 0.13 2.84 3.26 30.60 0.10 2.94 16 16 H 0.09 2.26 6.54 -2.39 -0.02 2.25 16 17 O -0.56 -14.26 13.18 -144.34 -1.90 -16.16 16 18 C 0.04 0.57 4.64 86.30 0.40 0.97 16 19 N -0.54 -9.23 4.43 -896.75 -3.97 -13.21 16 20 C 0.06 0.95 5.40 86.41 0.47 1.42 16 21 C -0.04 -0.71 6.50 30.19 0.20 -0.51 16 22 C -0.19 -3.37 6.42 25.12 0.16 -3.21 16 23 S 0.09 1.34 23.32 -56.49 -1.32 0.03 16 24 C -0.22 -2.88 11.21 66.66 0.75 -2.13 16 25 C -0.13 -1.87 10.02 21.29 0.21 -1.66 16 26 C -0.12 -2.05 5.85 -19.97 -0.12 -2.17 16 27 C 0.12 1.79 5.63 86.06 0.48 2.27 16 28 C -0.17 -7.10 8.96 22.11 0.20 -6.90 16 29 C -0.21 -9.97 9.74 22.49 0.22 -9.75 16 30 H 0.29 13.77 8.30 -92.70 -0.77 13.00 16 31 H 0.11 6.13 6.16 -2.91 -0.02 6.12 16 32 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.07 1.70 7.63 -2.39 -0.02 1.68 16 34 H 0.07 1.66 7.66 -2.39 -0.02 1.65 16 35 H 0.38 7.19 9.04 -74.06 -0.67 6.52 16 36 H 0.10 1.24 7.99 -2.39 -0.02 1.22 16 37 H 0.06 0.84 8.05 -2.38 -0.02 0.82 16 38 H 0.04 0.70 8.06 -2.38 -0.02 0.68 16 39 H 0.08 1.45 6.30 -2.39 -0.02 1.44 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.13 4.51 6.27 -2.91 -0.02 4.49 16 47 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -66.42 394.60 -0.97 -67.39 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.33 Total: 33.17 kcal Atomic # 6 Polarization: -58.36 SS G_CDS: 4.48 Total: -53.87 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -3.73 Total: -57.34 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -2.76 Total: -29.97 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.32 Total: 0.03 kcal Total: -66.42 -0.97 -67.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048235795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.927 kcal (2) G-P(sol) polarization free energy of solvation -66.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds