Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47485 * 2 1 4 4 C 1.36942 * 120.00236 * 275.64429 * 3 2 1 5 5 H 1.07996 * 119.99799 * 51.16670 * 4 3 2 6 6 C 1.38807 * 119.99861 * 231.18120 * 4 3 2 7 7 N 1.31618 * 120.00624 * 19.55947 * 6 4 3 8 8 Si 1.86802 * 119.99623 * 199.56576 * 6 4 3 9 9 H 1.48497 * 109.47338 * 59.99831 * 8 6 4 10 10 H 1.48500 * 109.47107 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47202 * 299.99468 * 8 6 4 12 12 S 1.65602 * 120.00404 * 95.63850 * 3 2 1 13 13 O 1.42099 * 106.40538 * 156.45949 * 12 3 2 14 14 O 1.42108 * 106.39775 * 23.54100 * 12 3 2 15 15 C 1.76199 * 107.21938 * 270.00683 * 12 3 2 16 16 C 1.38349 * 119.88171 * 115.01669 * 15 12 3 17 17 C 1.38344 * 119.89199 * 180.02562 * 16 15 12 18 18 C 1.39435 * 119.89295 * 0.02643 * 17 16 15 19 19 C 1.38467 * 119.99322 * 359.94712 * 18 17 16 20 20 C 1.38336 * 119.87627 * 294.99550 * 15 12 3 21 21 Cl 1.73603 * 119.91166 * 359.97438 * 20 15 12 22 22 N 1.40210 * 119.26671 * 179.97438 * 18 17 16 23 23 C 1.35086 * 118.98745 * 15.49373 * 22 18 17 24 24 O 1.21287 * 120.12813 * 181.69982 * 23 22 18 25 25 C 1.50758 * 119.73691 * 1.67603 * 23 22 18 26 26 O 1.36008 * 120.65164 * 180.12436 * 17 16 15 27 27 H 1.09004 * 109.47584 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46912 * 299.99922 * 1 2 3 29 29 H 1.08994 * 109.47311 * 59.99662 * 1 2 3 30 30 H 1.09000 * 109.46912 * 240.00078 * 2 1 3 31 31 H 1.09004 * 109.47294 * 120.00419 * 2 1 3 32 32 H 0.97000 * 120.00490 * 180.02562 * 7 6 4 33 33 H 1.08003 * 120.05496 * 359.96896 * 16 15 12 34 34 H 1.07992 * 120.09612 * 180.02562 * 19 18 17 35 35 H 0.97000 * 120.50289 * 195.22980 * 22 18 17 36 36 H 1.09003 * 109.43784 * 208.60876 * 25 23 22 37 37 H 1.08997 * 109.41526 * 88.69696 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1367 2.0656 -1.1802 5 1 1.3033 2.1080 -1.8657 6 6 3.3279 2.7046 -1.4954 7 7 4.4425 2.3560 -0.8884 8 14 3.3490 4.0596 -2.7811 9 1 2.4525 5.1630 -2.3523 10 1 4.7327 4.5771 -2.9322 11 1 2.8786 3.5163 -4.0806 12 16 2.4273 2.1149 1.4272 13 8 3.3401 3.1528 1.0976 14 8 2.7343 1.0711 2.3414 15 6 0.9770 2.9042 2.0421 16 6 0.4068 2.4725 3.2265 17 6 -0.7322 3.0918 3.7092 18 6 -1.3021 4.1486 3.0003 19 6 -0.7274 4.5773 1.8158 20 6 0.4129 3.9536 1.3392 21 17 1.1361 4.4891 -0.1454 22 7 -2.4568 4.7663 3.5014 23 6 -2.8088 4.5510 4.7877 24 8 -3.8202 5.0501 5.2338 25 6 -1.9398 3.6873 5.6662 26 8 -1.3041 2.6816 4.8731 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.2749 2.8028 -1.1085 33 1 0.8497 1.6528 3.7728 34 1 -1.1671 5.3959 1.2656 35 1 -2.9925 5.3427 2.9341 36 1 -2.5552 3.2119 6.4301 37 1 -1.1806 4.3057 6.1450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048353996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -97.669624 kcal Electronic energy + Delta-G solvation = -29130.383509 eV Core-core repulsion = 24834.177391 eV Total energy + Delta-G solvation = -4296.206117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.042 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53958 -38.98692 -37.63523 -36.09224 -35.80821 -35.54698 -35.02908 -33.99388 -32.28997 -30.53805 -29.92034 -29.11325 -27.81570 -24.76068 -23.78839 -23.20263 -21.55481 -20.17910 -19.26413 -18.83509 -18.10237 -17.47367 -16.75077 -16.27328 -15.96694 -15.56190 -15.50872 -15.18249 -14.81930 -14.68213 -14.22196 -13.97289 -13.70934 -13.39679 -13.24384 -12.99368 -12.86927 -12.49668 -12.06589 -11.98458 -11.75924 -11.40864 -11.35481 -11.29084 -11.03000 -10.62499 -10.54996 -10.48266 -10.41319 -10.31687 -10.25306 -10.08483 -9.69274 -9.60014 -8.72648 -8.66382 -8.01836 -7.70768 -6.61494 -4.18791 0.74838 1.19538 1.93360 2.02605 2.36201 2.60743 3.10611 3.14025 3.17409 3.27336 3.50136 3.74974 4.03107 4.51027 4.61398 4.67578 4.85411 4.87323 5.10692 5.16440 5.34699 5.63404 5.72451 5.84114 5.84899 5.99536 6.06367 6.10405 6.26777 6.29440 6.46645 6.53543 6.54712 6.63903 6.90943 7.15802 7.30050 7.43425 7.47475 8.12849 8.79744 9.24414 10.44267 Molecular weight = 360.04amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.004418 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.573872 B = 6336.580542 C = 7085.850089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.804 5.804 4 C -0.243 4.243 5 H 0.083 0.917 6 C 0.062 3.938 7 N -0.763 5.763 8 Si 0.906 3.094 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.269 1.269 12 S 2.525 3.475 13 O -0.932 6.932 14 O -1.014 7.014 15 C -0.641 4.641 16 C -0.015 4.015 17 C 0.048 3.952 18 C 0.125 3.875 19 C -0.145 4.145 20 C 0.053 3.947 21 Cl -0.004 7.004 22 N -0.657 5.657 23 C 0.493 3.507 24 O -0.516 6.516 25 C 0.048 3.952 26 O -0.299 6.299 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.283 0.717 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.416 0.584 36 H 0.146 0.854 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 2.108 3.401 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 N -0.628 5.628 4 C -0.395 4.395 5 H 0.101 0.899 6 C -0.158 4.158 7 N -0.399 5.399 8 Si 0.732 3.268 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.194 1.194 12 S 2.621 3.379 13 O -0.919 6.919 14 O -1.004 7.004 15 C -0.715 4.715 16 C -0.035 4.035 17 C 0.001 3.999 18 C 0.029 3.971 19 C -0.166 4.166 20 C 0.024 3.976 21 Cl 0.025 6.975 22 N -0.304 5.304 23 C 0.281 3.719 24 O -0.391 6.391 25 C -0.030 4.030 26 O -0.213 6.213 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.256 0.744 36 H 0.163 0.837 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.616 2.197 4.582 10.003 hybrid contribution -1.042 1.708 -0.713 2.124 sum -9.658 3.906 3.868 11.113 Atomic orbital electron populations 1.22272 0.98291 1.00733 1.01791 1.21188 0.92455 0.84007 1.02645 1.52944 1.77274 1.14839 1.17697 1.19061 0.96687 1.29947 0.93763 0.89908 1.25669 0.94470 0.98215 0.97432 1.69776 0.99228 1.34938 1.35995 0.86305 0.78448 0.81473 0.80572 1.18841 1.20176 1.19391 1.12987 0.77126 0.73856 0.73957 1.93447 1.58890 1.58105 1.81499 1.93273 1.84478 1.56708 1.65924 1.32780 1.27581 1.08251 1.02849 1.20306 0.89903 0.98843 0.94417 1.18705 0.95885 0.97099 0.88185 1.17897 0.88683 0.95071 0.95436 1.20511 0.97150 1.02747 0.96236 1.20484 0.92668 0.93500 0.90956 1.98538 1.80701 1.89463 1.28771 1.43757 1.25543 1.48553 1.12540 1.21628 0.86528 0.81226 0.82556 1.90800 1.25126 1.50201 1.72971 1.23190 0.96181 0.90798 0.92850 1.86284 1.70324 1.33414 1.31295 0.92872 0.93643 0.92246 0.90384 0.91085 0.90644 0.82624 0.84106 0.74436 0.83651 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.20 37.16 0.38 -2.38 16 2 C 0.12 2.37 6.36 -4.05 -0.03 2.35 16 3 N -0.80 -17.99 2.69 -59.92 -0.16 -18.15 16 4 C -0.24 -5.49 6.42 -15.06 -0.10 -5.59 16 5 H 0.08 1.75 7.90 -52.49 -0.41 1.33 16 6 C 0.06 1.46 3.70 -17.43 -0.06 1.40 16 7 N -0.76 -19.73 11.34 55.49 0.63 -19.10 16 8 Si 0.91 18.56 28.06 -169.99 -4.77 13.79 16 9 H -0.26 -5.19 6.24 56.52 0.35 -4.84 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 12 S 2.52 60.08 4.94 -107.50 -0.53 59.54 16 13 O -0.93 -24.64 12.53 -57.17 -0.72 -25.36 16 14 O -1.01 -25.72 15.51 -57.17 -0.89 -26.61 16 15 C -0.64 -12.88 5.91 -39.50 -0.23 -13.11 16 16 C -0.01 -0.27 9.49 -39.50 -0.38 -0.64 16 17 C 0.05 0.76 6.44 -39.10 -0.25 0.50 16 18 C 0.13 1.81 6.54 -83.49 -0.55 1.27 16 19 C -0.14 -2.18 9.73 -39.43 -0.38 -2.56 16 20 C 0.05 0.97 6.30 -39.48 -0.25 0.73 16 21 Cl 0.00 -0.08 20.61 -51.86 -1.07 -1.15 16 22 N -0.66 -8.00 5.47 -9.67 -0.05 -8.05 16 23 C 0.49 6.20 7.94 -10.82 -0.09 6.12 16 24 O -0.52 -7.63 17.95 5.55 0.10 -7.53 16 25 C 0.05 0.51 7.17 36.03 0.26 0.77 16 26 O -0.30 -4.14 10.45 -19.76 -0.21 -4.35 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 31 H 0.07 1.38 6.90 -51.93 -0.36 1.02 16 32 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.16 2.76 7.33 -52.48 -0.38 2.38 16 34 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.42 4.15 8.89 -40.82 -0.36 3.79 16 36 H 0.15 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -30.43 332.41 -7.99 -38.42 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.66 Total: 4.70 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.67 Total: -11.16 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.42 Total: -45.30 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -1.71 Total: -63.85 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.77 Total: 13.79 kcal Atomic # 16 Polarization: 60.08 SS G_CDS: -0.53 Total: 59.54 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.07 Total: -1.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.43 -7.99 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048353996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.252 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds