Wall clock time and date at job start Tue Mar 31 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31587 * 122.22692 * 2 1 4 4 C 1.29978 * 117.12858 * 180.26812 * 3 2 1 5 5 N 1.38773 * 125.36191 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00101 * 180.02562 * 5 4 3 7 7 O 1.21590 * 119.99808 * 359.97438 * 6 5 4 8 8 C 1.47628 * 120.00488 * 180.02562 * 6 5 4 9 9 C 1.40160 * 119.90156 * 359.72953 * 8 6 5 10 10 C 1.36435 * 120.45253 * 179.74881 * 9 8 6 11 11 C 1.39073 * 120.14773 * 0.48889 * 10 9 8 12 12 N 1.37803 * 133.86130 * 179.78515 * 11 10 9 13 13 H 0.96999 * 126.30427 * 0.02562 * 12 11 10 14 14 C 1.36092 * 107.38765 * 179.97438 * 12 11 10 15 15 N 1.30061 * 110.12990 * 0.02562 * 14 12 11 16 16 C 1.35864 * 109.56398 * 359.97438 * 15 14 12 17 17 C 1.39151 * 119.90760 * 179.97438 * 8 6 5 18 18 S 1.76140 * 109.27044 * 0.02562 * 4 3 2 19 19 C 1.34665 * 122.23065 * 180.28579 * 2 1 3 20 20 S 1.76203 * 125.92571 * 359.70797 * 19 2 1 21 21 C 1.76206 * 99.99663 * 180.02562 * 20 19 2 22 22 H 1.07994 * 120.00204 * 0.02562 * 21 20 19 23 23 C 1.38432 * 119.99640 * 180.02562 * 21 20 19 24 24 N 1.31804 * 120.00023 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99625 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47271 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46993 * 119.99658 * 25 23 21 28 28 H 1.48501 * 109.47060 * 239.99887 * 25 23 21 29 29 H 1.09001 * 109.46802 * 269.71662 * 1 2 3 30 30 H 1.09002 * 109.46827 * 29.71221 * 1 2 3 31 31 H 1.08998 * 109.47293 * 149.71050 * 1 2 3 32 32 H 0.97001 * 120.00444 * 0.02562 * 5 4 3 33 33 H 1.07999 * 119.77497 * 359.97438 * 9 8 6 34 34 H 1.08000 * 119.92368 * 180.27097 * 10 9 8 35 35 H 1.08004 * 124.92898 * 179.97438 * 14 12 11 36 36 H 1.08000 * 120.24437 * 0.02562 * 17 8 6 37 37 H 0.97003 * 120.00145 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5034 0.9977 -0.0054 5 7 4.4039 2.0535 -0.0058 6 6 5.7292 1.8089 -0.0123 7 8 6.1359 0.6630 -0.0172 8 6 6.6873 2.9320 -0.0122 9 6 6.2163 4.2521 -0.0111 10 6 7.0917 5.2986 -0.0058 11 6 8.4623 5.0628 -0.0117 12 7 9.5718 5.8800 -0.0126 13 1 9.5707 6.8500 -0.0085 14 6 10.6695 5.0755 -0.0191 15 7 10.3086 3.8260 -0.0228 16 6 8.9525 3.7441 -0.0183 17 6 8.0552 2.6771 -0.0183 18 16 3.9346 -0.7101 -0.0121 19 6 2.2252 -1.1391 -0.0057 20 16 1.5696 -2.7746 -0.0066 21 6 3.0665 -3.7042 -0.0144 22 1 4.0187 -3.1946 -0.0166 23 6 3.0220 -5.0878 -0.0176 24 7 1.8600 -5.7098 -0.0144 25 14 4.6089 -6.0732 -0.0266 26 1 5.7680 -5.1450 -0.0297 27 1 4.6651 -6.9320 1.1836 28 1 4.6551 -6.9260 -1.2414 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 0.8926 -0.5094 31 1 -0.3634 -0.8873 -0.5183 32 1 4.0796 2.9677 -0.0015 33 1 5.1532 4.4423 -0.0108 34 1 6.7195 6.3124 -0.0006 35 1 11.6917 5.4242 -0.0217 36 1 8.4191 1.6603 -0.0235 37 1 1.8287 -6.6793 -0.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048366980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:45 Heat of formation + Delta-G solvation = 79.974719 kcal Electronic energy + Delta-G solvation = -25029.490792 eV Core-core repulsion = 21218.466383 eV Total energy + Delta-G solvation = -3811.024409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.046 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.57457 -40.26259 -38.55515 -37.22740 -34.82304 -33.64393 -32.78650 -30.98061 -30.38657 -29.71840 -27.07145 -25.74081 -25.13377 -23.32933 -22.82938 -22.03058 -21.04466 -19.81398 -18.71464 -18.29132 -17.81783 -17.18043 -16.54404 -15.97032 -15.76188 -15.46351 -15.31300 -15.07058 -14.64494 -14.32541 -14.13138 -13.93538 -13.89387 -13.32471 -13.14963 -12.64342 -12.29508 -12.06013 -11.93829 -11.85301 -11.33486 -11.24936 -11.24170 -11.05218 -10.80932 -10.55353 -10.46172 -10.20738 -9.89483 -9.51028 -9.04191 -8.92346 -8.71540 -8.67146 -8.61621 -7.75253 -6.56764 -6.46444 -4.24121 0.46319 0.61784 1.50424 1.91998 2.29558 2.39814 2.57441 2.69912 2.86625 3.12164 3.12579 3.21936 3.40416 3.47778 3.74755 3.81408 4.01863 4.14495 4.45332 4.56638 4.79137 4.86052 4.87762 4.91738 5.07324 5.12829 5.24703 5.58297 5.82356 5.90554 5.99071 6.00980 6.16173 6.25721 6.27076 6.48626 6.52149 6.78552 6.99138 7.21161 7.36530 7.37304 7.99090 8.08543 8.54491 8.92225 10.49003 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.002454 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.744659 B =11408.671216 C =13369.268342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.475 5.475 4 C 0.187 3.813 5 N -0.610 5.610 6 C 0.555 3.445 7 O -0.501 6.501 8 C -0.137 4.137 9 C -0.068 4.068 10 C -0.115 4.115 11 C 0.068 3.932 12 N -0.601 5.601 13 H 0.426 0.574 14 C 0.261 3.739 15 N -0.485 5.485 16 C 0.035 3.965 17 C 0.014 3.986 18 S 0.205 5.795 19 C -0.252 4.252 20 S 0.148 5.852 21 C -0.555 4.555 22 H 0.090 0.910 23 C 0.081 3.919 24 N -0.863 5.863 25 Si 0.924 3.076 26 H -0.263 1.263 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.220 0.780 36 H 0.150 0.850 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 25.018 -0.004 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 N -0.197 5.197 4 C -0.183 4.183 5 N -0.259 5.259 6 C 0.342 3.658 7 O -0.376 6.376 8 C -0.143 4.143 9 C -0.088 4.088 10 C -0.136 4.136 11 C -0.044 4.044 12 N -0.212 5.212 13 H 0.265 0.735 14 C -0.026 4.026 15 N -0.203 5.203 16 C -0.083 4.083 17 C -0.006 4.006 18 S 0.449 5.551 19 C -0.489 4.489 20 S 0.399 5.601 21 C -0.704 4.704 22 H 0.108 0.892 23 C -0.129 4.129 24 N -0.496 5.496 25 Si 0.748 3.252 26 H -0.187 1.187 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.236 0.764 36 H 0.167 0.833 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.924 22.599 -0.015 25.552 hybrid contribution 0.743 1.731 0.012 1.884 sum 12.667 24.331 -0.003 27.430 Atomic orbital electron populations 1.20115 0.88067 1.02089 1.01778 1.19024 0.96669 0.84582 1.12036 1.65818 1.02756 1.32410 1.18676 1.23704 0.89848 0.92852 1.11930 1.42182 1.04245 1.08120 1.71324 1.18148 0.81163 0.89226 0.77279 1.90799 1.77051 1.21718 1.48015 1.19269 0.92876 0.92526 1.09601 1.20752 0.99793 0.90823 0.97470 1.19561 0.88449 0.99970 1.05639 1.19087 0.89618 0.91540 1.04114 1.43211 1.05475 1.10076 1.62468 0.73527 1.25477 0.93498 0.85312 0.98353 1.70515 1.10728 1.18530 1.20565 1.18894 0.90343 0.91872 1.07181 1.20435 0.89656 0.98890 0.91656 1.85892 1.01580 0.95288 1.72352 1.28783 1.01389 1.06723 1.11974 1.83062 1.11080 0.84443 1.81534 1.23313 0.93618 0.94027 1.59396 0.89228 1.25029 0.98271 0.96692 0.92941 1.70022 1.24358 1.10225 1.45029 0.85992 0.81417 0.79466 0.78287 1.18684 1.20025 1.20032 0.91891 0.91953 0.91056 0.74874 0.84563 0.85070 0.76402 0.83268 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.15 16 3 N -0.48 -9.55 10.55 -9.81 -0.10 -9.65 16 4 C 0.19 3.64 8.39 -87.28 -0.73 2.91 16 5 N -0.61 -9.11 5.34 -12.72 -0.07 -9.18 16 6 C 0.56 8.46 7.72 -12.43 -0.10 8.36 16 7 O -0.50 -9.55 13.83 5.29 0.07 -9.48 16 8 C -0.14 -1.61 5.87 -105.00 -0.62 -2.23 16 9 C -0.07 -0.57 9.47 -39.51 -0.37 -0.94 16 10 C -0.12 -0.81 10.00 -39.92 -0.40 -1.21 16 11 C 0.07 0.57 7.30 -83.95 -0.61 -0.04 16 12 N -0.60 -2.95 6.22 -11.71 -0.07 -3.02 16 13 H 0.43 0.42 8.96 -40.82 -0.37 0.06 16 14 C 0.26 1.54 12.97 -89.77 -1.16 0.37 16 15 N -0.48 -5.22 11.28 -12.06 -0.14 -5.35 16 16 C 0.03 0.39 7.22 -84.72 -0.61 -0.22 16 17 C 0.01 0.17 9.64 -38.81 -0.37 -0.20 16 18 S 0.20 4.60 18.34 -107.50 -1.97 2.62 16 19 C -0.25 -5.87 6.67 29.47 0.20 -5.67 16 20 S 0.15 3.76 20.74 -107.50 -2.23 1.53 16 21 C -0.55 -15.28 9.26 30.80 0.29 -14.99 16 22 H 0.09 2.46 5.97 -52.49 -0.31 2.15 16 23 C 0.08 2.20 5.49 -17.49 -0.10 2.11 16 24 N -0.86 -23.98 13.22 55.47 0.73 -23.25 16 25 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 26 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.25 7.38 -51.93 -0.38 0.87 16 32 H 0.41 4.58 6.82 -40.82 -0.28 4.30 16 33 H 0.14 0.79 6.36 -52.49 -0.33 0.46 16 34 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.22 0.21 8.06 -52.48 -0.42 -0.22 16 36 H 0.15 1.99 7.63 -52.49 -0.40 1.59 16 37 H 0.28 7.10 8.32 -40.82 -0.34 6.76 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -35.67 351.00 -11.21 -46.88 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -2.90 Total: 0.25 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -4.80 Total: -12.62 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.35 Total: -50.45 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 8.36 SS G_CDS: -4.20 Total: 4.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.67 -11.21 -46.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048366980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.852 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds