Wall clock time and date at job start Tue Mar 31 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31587 * 122.22692 * 2 1 4 4 C 1.29978 * 117.12858 * 180.26812 * 3 2 1 5 5 N 1.38773 * 125.36191 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00101 * 180.02562 * 5 4 3 7 7 O 1.21590 * 119.99808 * 359.97438 * 6 5 4 8 8 C 1.47628 * 120.00488 * 180.02562 * 6 5 4 9 9 C 1.40160 * 119.90156 * 359.72953 * 8 6 5 10 10 C 1.36435 * 120.45253 * 179.74881 * 9 8 6 11 11 C 1.39073 * 120.14773 * 0.48889 * 10 9 8 12 12 N 1.37803 * 133.86130 * 179.78515 * 11 10 9 13 13 H 0.96999 * 126.30427 * 0.02562 * 12 11 10 14 14 C 1.36092 * 107.38765 * 179.97438 * 12 11 10 15 15 N 1.30061 * 110.12990 * 0.02562 * 14 12 11 16 16 C 1.35864 * 109.56398 * 359.97438 * 15 14 12 17 17 C 1.39151 * 119.90760 * 179.97438 * 8 6 5 18 18 S 1.76140 * 109.27044 * 0.02562 * 4 3 2 19 19 C 1.34665 * 122.23065 * 180.28579 * 2 1 3 20 20 S 1.76203 * 125.92571 * 359.70797 * 19 2 1 21 21 C 1.76206 * 99.99663 * 180.02562 * 20 19 2 22 22 H 1.07994 * 120.00204 * 0.02562 * 21 20 19 23 23 C 1.38432 * 119.99640 * 180.02562 * 21 20 19 24 24 N 1.31804 * 120.00023 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99625 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47271 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46993 * 119.99658 * 25 23 21 28 28 H 1.48501 * 109.47060 * 239.99887 * 25 23 21 29 29 H 1.09001 * 109.46802 * 269.71662 * 1 2 3 30 30 H 1.09002 * 109.46827 * 29.71221 * 1 2 3 31 31 H 1.08998 * 109.47293 * 149.71050 * 1 2 3 32 32 H 0.97001 * 120.00444 * 0.02562 * 5 4 3 33 33 H 1.07999 * 119.77497 * 359.97438 * 9 8 6 34 34 H 1.08000 * 119.92368 * 180.27097 * 10 9 8 35 35 H 1.08004 * 124.92898 * 179.97438 * 14 12 11 36 36 H 1.08000 * 120.24437 * 0.02562 * 17 8 6 37 37 H 0.97003 * 120.00145 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5034 0.9977 -0.0054 5 7 4.4039 2.0535 -0.0058 6 6 5.7292 1.8089 -0.0123 7 8 6.1359 0.6630 -0.0172 8 6 6.6873 2.9320 -0.0122 9 6 6.2163 4.2521 -0.0111 10 6 7.0917 5.2986 -0.0058 11 6 8.4623 5.0628 -0.0117 12 7 9.5718 5.8800 -0.0126 13 1 9.5707 6.8500 -0.0085 14 6 10.6695 5.0755 -0.0191 15 7 10.3086 3.8260 -0.0228 16 6 8.9525 3.7441 -0.0183 17 6 8.0552 2.6771 -0.0183 18 16 3.9346 -0.7101 -0.0121 19 6 2.2252 -1.1391 -0.0057 20 16 1.5696 -2.7746 -0.0066 21 6 3.0665 -3.7042 -0.0144 22 1 4.0187 -3.1946 -0.0166 23 6 3.0220 -5.0878 -0.0176 24 7 1.8600 -5.7098 -0.0144 25 14 4.6089 -6.0732 -0.0266 26 1 5.7680 -5.1450 -0.0297 27 1 4.6651 -6.9320 1.1836 28 1 4.6551 -6.9260 -1.2414 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 0.8926 -0.5094 31 1 -0.3634 -0.8873 -0.5183 32 1 4.0796 2.9677 -0.0015 33 1 5.1532 4.4423 -0.0108 34 1 6.7195 6.3124 -0.0006 35 1 11.6917 5.4242 -0.0217 36 1 8.4191 1.6603 -0.0235 37 1 1.8287 -6.6793 -0.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048366980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:42 Heat of formation + Delta-G solvation = 56.047300 kcal Electronic energy + Delta-G solvation = -25030.528363 eV Core-core repulsion = 21218.466383 eV Total energy + Delta-G solvation = -3812.061980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.046 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -43.19011 -41.56387 -40.16920 -38.05055 -36.25611 -34.81242 -34.26751 -32.29772 -31.23477 -30.57849 -28.77079 -27.71106 -26.27521 -24.06794 -23.97755 -22.69714 -22.35885 -21.27322 -19.97488 -19.35272 -19.13435 -18.51665 -17.59729 -17.33482 -17.06914 -16.86022 -16.70030 -16.23707 -15.84542 -15.46834 -15.31392 -15.00707 -14.93397 -14.68941 -14.37748 -14.04180 -13.57716 -13.40055 -13.25671 -13.07225 -12.88851 -12.84342 -12.78654 -12.36681 -12.14294 -12.03311 -11.87994 -11.43126 -11.35300 -11.08964 -10.82047 -10.48470 -10.47100 -9.67877 -9.46946 -9.34635 -8.57538 -8.35499 -6.29063 -0.49978 -0.10686 0.02637 0.21943 0.83918 1.27417 1.31653 1.39904 1.42928 1.47710 1.63872 1.81836 1.96260 2.05374 2.14779 2.75290 2.81547 3.09965 3.18097 3.42813 3.62155 3.75284 3.99977 4.14904 4.27347 4.38727 4.45035 4.50635 4.68488 4.87136 4.87801 4.98265 5.04946 5.12226 5.18882 5.30890 5.31467 5.48385 5.59782 5.94920 6.03196 6.44318 6.72471 6.81870 6.85166 6.87767 8.50392 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.002454 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.744659 B =11408.671216 C =13369.268342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.039 3.961 3 N -0.477 5.477 4 C 0.227 3.773 5 N -0.595 5.595 6 C 0.557 3.443 7 O -0.542 6.542 8 C -0.145 4.145 9 C -0.069 4.069 10 C -0.096 4.096 11 C 0.071 3.929 12 N -0.581 5.581 13 H 0.448 0.552 14 C 0.285 3.715 15 N -0.545 5.545 16 C 0.006 3.994 17 C -0.013 4.013 18 S 0.153 5.847 19 C -0.281 4.281 20 S 0.103 5.897 21 C -0.575 4.575 22 H 0.079 0.921 23 C 0.036 3.964 24 N -0.894 5.894 25 Si 0.984 3.016 26 H -0.271 1.271 27 H -0.263 1.263 28 H -0.263 1.263 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.436 0.564 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.268 0.732 36 H 0.119 0.881 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.691 29.964 0.030 32.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 N -0.199 5.199 4 C -0.145 4.145 5 N -0.247 5.247 6 C 0.346 3.654 7 O -0.419 6.419 8 C -0.151 4.151 9 C -0.089 4.089 10 C -0.116 4.116 11 C -0.042 4.042 12 N -0.194 5.194 13 H 0.292 0.708 14 C -0.002 4.002 15 N -0.265 5.265 16 C -0.111 4.111 17 C -0.033 4.033 18 S 0.398 5.602 19 C -0.516 4.516 20 S 0.350 5.650 21 C -0.724 4.724 22 H 0.097 0.903 23 C -0.172 4.172 24 N -0.529 5.529 25 Si 0.806 3.194 26 H -0.195 1.195 27 H -0.187 1.187 28 H -0.187 1.187 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.279 0.721 33 H 0.184 0.816 34 H 0.194 0.806 35 H 0.283 0.717 36 H 0.137 0.863 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.002 27.657 0.019 30.560 hybrid contribution 0.652 0.669 0.004 0.934 sum 13.653 28.326 0.023 31.445 Atomic orbital electron populations 1.20253 0.85471 1.03223 1.03161 1.19726 0.98462 0.84068 1.08054 1.66037 1.02361 1.31294 1.20225 1.23997 0.90203 0.92749 1.07583 1.42242 1.03586 1.08115 1.70759 1.18867 0.81343 0.89680 0.75468 1.90789 1.77581 1.23953 1.49621 1.18998 0.91432 0.92749 1.11877 1.21018 1.01620 0.89170 0.97078 1.20002 0.87420 1.01542 1.02631 1.19288 0.90991 0.90804 1.03166 1.43208 1.04115 1.11089 1.60974 0.70811 1.26428 0.95323 0.84058 0.94428 1.70481 1.10788 1.21528 1.23667 1.19009 0.90958 0.92931 1.08179 1.20302 0.90675 0.98340 0.94011 1.86164 1.02412 0.98327 1.73283 1.28598 1.01511 1.06126 1.15403 1.82831 1.11057 0.86132 1.84933 1.23481 0.93929 0.94859 1.60102 0.90287 1.25858 1.01330 0.97424 0.92548 1.70090 1.25966 1.10693 1.46149 0.85106 0.77261 0.77990 0.79087 1.19508 1.18729 1.18741 0.90242 0.89311 0.91375 0.72106 0.81599 0.80632 0.71684 0.86262 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.02 71.24 0.71 -1.36 16 2 C 0.04 1.60 6.73 41.78 0.28 1.89 16 3 N -0.48 -18.41 10.55 -184.93 -1.95 -20.36 16 4 C 0.23 8.68 8.39 179.18 1.50 10.19 16 5 N -0.59 -16.89 5.34 -312.40 -1.67 -18.56 16 6 C 0.56 17.03 7.72 86.72 0.67 17.70 16 7 O -0.54 -21.75 13.83 -4.00 -0.06 -21.81 16 8 C -0.14 -3.33 5.87 -20.11 -0.12 -3.45 16 9 C -0.07 -0.91 9.47 22.32 0.21 -0.70 16 10 C -0.10 -0.90 10.00 22.05 0.22 -0.68 16 11 C 0.07 0.95 7.30 39.00 0.28 1.24 16 12 N -0.58 -3.19 6.22 -190.98 -1.19 -4.38 16 13 H 0.45 -1.54 8.96 -92.71 -0.83 -2.37 16 14 C 0.29 2.39 12.97 180.05 2.33 4.73 16 15 N -0.54 -11.23 11.28 -192.08 -2.17 -13.40 16 16 C 0.01 0.14 7.22 39.40 0.28 0.42 16 17 C -0.01 -0.33 9.64 22.77 0.22 -0.11 16 18 S 0.15 7.15 18.34 -56.49 -1.04 6.11 16 19 C -0.28 -13.49 6.67 67.00 0.45 -13.04 16 20 S 0.10 5.47 20.74 -56.49 -1.17 4.30 16 21 C -0.58 -33.32 9.26 67.87 0.63 -32.69 16 22 H 0.08 4.61 5.97 -2.91 -0.02 4.60 16 23 C 0.04 2.00 5.49 84.74 0.46 2.46 16 24 N -0.89 -51.40 13.22 21.59 0.29 -51.11 16 25 Si 0.98 44.48 29.55 68.60 2.03 46.51 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.37 7.38 -2.39 -0.02 2.35 16 32 H 0.44 8.27 6.82 -92.71 -0.63 7.64 16 33 H 0.17 1.12 6.36 -2.91 -0.02 1.10 16 34 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.27 -0.78 8.06 -2.91 -0.02 -0.80 16 36 H 0.12 3.65 7.63 -2.91 -0.02 3.63 16 37 H 0.28 14.87 8.32 -92.71 -0.77 14.10 16 Total: -1.00 -84.51 351.00 0.95 -83.56 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -0.27 Total: 2.55 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 8.15 Total: -13.41 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -6.69 Total: -107.81 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 12.62 SS G_CDS: -2.21 Total: 10.41 kcal Total: -84.51 0.95 -83.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048366980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.607 kcal (2) G-P(sol) polarization free energy of solvation -84.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds