Wall clock time and date at job start Tue Mar 31 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99588 * 2 1 4 4 H 1.48500 * 109.47232 * 240.00091 * 3 2 1 5 5 H 1.48502 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47653 * 119.99843 * 3 2 1 7 7 C 1.38637 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99638 * 180.02562 * 7 2 1 9 9 O 1.34802 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.35609 * 116.99757 * 185.07216 * 9 7 2 11 11 C 1.38727 * 120.16226 * 354.42410 * 10 9 7 12 12 C 1.38117 * 120.08422 * 180.29827 * 11 10 9 13 13 C 1.38525 * 120.40518 * 359.67761 * 12 11 10 14 14 C 1.37878 * 120.32435 * 0.02562 * 13 12 11 15 15 C 1.39698 * 119.90253 * 0.02562 * 14 13 12 16 16 C 1.47286 * 120.19714 * 180.02562 * 15 14 13 17 17 N 1.29884 * 119.99673 * 180.02562 * 16 15 14 18 18 N 1.40098 * 119.99500 * 179.97438 * 17 16 15 19 19 C 1.34778 * 119.99585 * 179.97438 * 18 17 16 20 20 O 1.21613 * 120.00095 * 0.02562 * 19 18 17 21 21 C 1.47711 * 120.00095 * 180.02562 * 19 18 17 22 22 C 1.40685 * 119.75178 * 0.24945 * 21 19 18 23 23 C 1.35713 * 120.84410 * 180.30618 * 22 21 19 24 24 C 1.40707 * 120.02600 * 359.72575 * 23 22 21 25 25 C 1.40477 * 121.04007 * 179.97438 * 24 23 22 26 26 C 1.36145 * 119.72323 * 180.02562 * 25 24 23 27 27 C 1.39366 * 121.00961 * 0.02562 * 26 25 24 28 28 C 1.36089 * 120.95314 * 359.97438 * 27 26 25 29 29 C 1.40657 * 119.66127 * 0.02562 * 28 27 26 30 30 C 1.38519 * 119.75325 * 180.02562 * 21 19 18 31 31 H 0.96993 * 120.00370 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.95598 * 359.97261 * 11 10 9 33 33 H 1.07997 * 119.79251 * 179.69508 * 12 11 10 34 34 H 1.08006 * 119.83584 * 180.02562 * 13 12 11 35 35 H 1.07997 * 120.05426 * 179.97438 * 14 13 12 36 36 H 1.08001 * 120.00373 * 359.97438 * 16 15 14 37 37 H 0.96998 * 120.00452 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.57708 * 0.03658 * 22 21 19 39 39 H 1.07998 * 119.98470 * 179.74825 * 23 22 21 40 40 H 1.07999 * 120.14338 * 0.05148 * 25 24 23 41 41 H 1.08002 * 119.49530 * 180.02562 * 26 25 24 42 42 H 1.08002 * 119.52570 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.16844 * 180.02562 * 28 27 26 44 44 H 1.08001 * 120.27820 * 359.96905 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6967 1.2124 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0695 -3.5029 0.1079 11 6 3.4552 -3.4401 0.0952 12 6 4.2018 -4.5975 0.1984 13 6 3.5756 -5.8270 0.3220 14 6 2.1994 -5.9083 0.3426 15 6 1.4314 -4.7461 0.2380 16 6 -0.0392 -4.8254 0.2600 17 7 -0.7494 -3.7424 0.1619 18 7 -2.1482 -3.8180 0.1822 19 6 -2.8853 -2.6941 0.0810 20 8 -2.3361 -1.6146 -0.0284 21 6 -4.3601 -2.7736 0.1030 22 6 -4.9899 -4.0246 0.2351 23 6 -6.3433 -4.1240 0.2517 24 6 -7.1357 -2.9664 0.1418 25 6 -8.5382 -3.0446 0.1560 26 6 -9.2788 -1.9074 0.0473 27 6 -8.6671 -0.6615 -0.0790 28 6 -7.3112 -0.5460 -0.0966 29 6 -6.5129 -1.6989 0.0133 30 6 -5.1126 -1.6154 -0.0019 31 1 -0.4850 0.8400 -0.0004 32 1 3.9509 -2.4853 -0.0009 33 1 5.2803 -4.5436 0.1830 34 1 4.1684 -6.7262 0.4025 35 1 1.7158 -6.8692 0.4387 36 1 -0.5269 -5.7842 0.3567 37 1 -2.5863 -4.6790 0.2699 38 1 -4.3887 -4.9178 0.3200 39 1 -6.8123 -5.0919 0.3496 40 1 -9.0270 -4.0027 0.2531 41 1 -10.3568 -1.9717 0.0590 42 1 -9.2779 0.2252 -0.1631 43 1 -6.8505 0.4259 -0.1946 44 1 -4.6253 -0.6564 -0.0990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052410926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:33 Heat of formation + Delta-G solvation = 73.315421 kcal Electronic energy + Delta-G solvation = -29902.117277 eV Core-core repulsion = 25751.980715 eV Total energy + Delta-G solvation = -4150.136562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.126 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.55261 -39.01187 -38.70695 -36.36108 -36.17652 -35.50457 -32.84931 -32.36910 -32.02151 -30.60983 -29.39989 -29.25431 -28.36746 -25.23759 -24.51702 -23.30897 -22.78306 -22.00195 -21.47356 -20.43229 -19.89283 -18.01757 -17.81481 -17.41854 -17.00256 -16.39230 -15.97406 -15.47695 -14.86266 -14.79623 -14.49661 -14.39654 -14.07127 -13.91179 -13.65037 -13.60139 -13.51363 -13.46362 -13.40376 -13.21585 -12.60486 -12.34276 -12.03994 -11.82648 -11.53925 -11.39020 -11.33904 -11.03708 -10.98485 -10.76641 -10.74765 -10.64587 -10.36316 -10.11396 -9.45738 -9.28197 -8.95987 -8.86768 -8.76188 -8.64758 -8.04418 -7.65499 -6.91012 -6.15576 -3.79987 0.30416 0.70950 1.71819 1.88590 2.49261 2.57119 3.10967 3.20961 3.22537 3.24087 3.25575 3.75047 4.08254 4.19220 4.41805 4.63126 4.64750 4.75027 4.80438 4.90463 5.11457 5.12088 5.15750 5.21750 5.24243 5.31680 5.39547 5.59807 5.64716 5.73257 5.75720 5.89535 5.92395 5.99109 6.03760 6.13359 6.23944 6.29932 6.33166 6.40279 6.55663 6.65685 6.78008 6.79676 6.91262 7.17970 7.28821 7.44274 7.47318 7.78250 7.88979 8.11778 8.37433 9.13430 9.21079 9.86234 10.89328 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002612 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.254510 B =10718.738614 C =13232.976857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.045 3.955 3 Si 0.928 3.072 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.409 4.409 8 H 0.088 0.912 9 O -0.113 6.113 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.061 4.061 13 C -0.230 4.230 14 C -0.043 4.043 15 C -0.147 4.147 16 C 0.096 3.904 17 N -0.181 5.181 18 N -0.590 5.590 19 C 0.543 3.457 20 O -0.428 6.428 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.115 4.115 24 C -0.039 4.039 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.125 4.125 28 C -0.092 4.092 29 C -0.060 4.060 30 C -0.036 4.036 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.365 0.635 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 -8.261 0.665 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.166 4.166 3 Si 0.753 3.247 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.105 0.895 9 O -0.009 6.009 10 C 0.103 3.897 11 C -0.256 4.256 12 C -0.081 4.081 13 C -0.250 4.250 14 C -0.064 4.064 15 C -0.152 4.152 16 C -0.113 4.113 17 N 0.013 4.987 18 N -0.334 5.334 19 C 0.327 3.673 20 O -0.295 6.295 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.039 4.039 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.110 4.110 29 C -0.060 4.060 30 C -0.055 4.055 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.203 0.797 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.075 -6.140 0.455 16.284 hybrid contribution 0.184 -0.694 0.154 0.734 sum -14.891 -6.834 0.609 16.395 Atomic orbital electron populations 1.70270 1.04737 1.27126 1.39455 1.25347 0.95877 0.98360 0.96986 0.86008 0.78896 0.80832 0.78970 1.19722 1.20432 1.19720 1.21296 0.91589 0.81257 1.54351 0.89453 1.84177 1.33139 1.10740 1.72893 1.19444 0.89948 0.87856 0.92422 1.21116 0.93680 0.99023 1.11822 1.20829 0.98383 0.92439 0.96415 1.20383 0.94019 0.96912 1.13661 1.20626 0.93492 0.95439 0.96834 1.17321 0.88935 0.91641 1.17310 1.24233 0.94031 0.93449 0.99572 1.75902 0.87047 1.24065 1.11664 1.47014 1.03368 1.08728 1.74275 1.17995 0.85440 0.84415 0.79439 1.91165 1.71249 1.25776 1.41271 1.20037 0.93302 0.94083 1.04726 1.20942 0.95013 0.96573 0.98431 1.20862 0.93427 0.97588 1.01394 1.18189 0.93699 0.92882 0.99134 1.21020 0.92429 0.98904 1.00703 1.20892 1.00013 0.92598 0.99418 1.20854 0.94833 0.97736 1.00871 1.21163 0.93864 0.97763 0.98249 1.18080 0.93188 0.93233 1.01545 1.21562 0.91724 0.98970 0.93285 0.92153 0.85520 0.87649 0.87596 0.86955 0.88378 0.79745 0.85834 0.85201 0.85545 0.86003 0.85865 0.85092 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.52 12.56 55.48 0.70 -22.82 16 2 C 0.05 1.27 5.49 -17.52 -0.10 1.17 16 3 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.41 -11.63 9.48 30.88 0.29 -11.33 16 8 H 0.09 2.31 5.21 -52.48 -0.27 2.03 16 9 O -0.11 -3.25 7.64 0.56 0.00 -3.24 16 10 C 0.16 4.03 6.66 -38.61 -0.26 3.77 16 11 C -0.24 -5.22 9.16 -39.45 -0.36 -5.58 16 12 C -0.06 -1.13 10.03 -39.52 -0.40 -1.52 16 13 C -0.23 -3.91 10.02 -39.61 -0.40 -4.31 16 14 C -0.04 -0.75 9.79 -39.17 -0.38 -1.13 16 15 C -0.15 -3.11 5.88 -104.88 -0.62 -3.73 16 16 C 0.10 1.89 10.75 -14.70 -0.16 1.73 16 17 N -0.18 -4.19 8.90 32.13 0.29 -3.90 16 18 N -0.59 -11.28 6.21 30.50 0.19 -11.09 16 19 C 0.54 11.11 7.88 -12.39 -0.10 11.01 16 20 O -0.43 -11.06 15.53 5.27 0.08 -10.97 16 21 C -0.12 -1.84 5.87 -105.00 -0.62 -2.45 16 22 C -0.09 -1.10 9.44 -39.56 -0.37 -1.48 16 23 C -0.11 -1.21 9.73 -39.55 -0.38 -1.60 16 24 C -0.04 -0.45 5.75 -106.76 -0.61 -1.06 16 25 C -0.11 -1.04 9.76 -39.49 -0.39 -1.43 16 26 C -0.11 -0.95 9.95 -39.91 -0.40 -1.34 16 27 C -0.12 -1.14 9.95 -39.93 -0.40 -1.54 16 28 C -0.09 -1.01 9.77 -39.44 -0.39 -1.40 16 29 C -0.06 -0.78 5.74 -106.85 -0.61 -1.39 16 30 C -0.04 -0.55 9.34 -38.71 -0.36 -0.91 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 36 H 0.10 1.46 8.02 -52.49 -0.42 1.04 16 37 H 0.36 5.20 6.63 -182.60 -1.21 3.99 16 38 H 0.12 1.20 6.34 -52.49 -0.33 0.86 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.15 2.30 7.61 -52.49 -0.40 1.90 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -35.92 384.37 -10.42 -46.35 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.45 Total: 8.37 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -7.00 Total: -24.51 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 1.17 Total: -37.82 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.92 -10.42 -46.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052410926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.661 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds