Wall clock time and date at job start Tue Mar 31 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99588 * 2 1 4 4 H 1.48500 * 109.47232 * 240.00091 * 3 2 1 5 5 H 1.48502 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47653 * 119.99843 * 3 2 1 7 7 C 1.38637 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99638 * 180.02562 * 7 2 1 9 9 O 1.34802 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.35609 * 116.99757 * 185.07216 * 9 7 2 11 11 C 1.38727 * 120.16226 * 354.42410 * 10 9 7 12 12 C 1.38117 * 120.08422 * 180.29827 * 11 10 9 13 13 C 1.38525 * 120.40518 * 359.67761 * 12 11 10 14 14 C 1.37878 * 120.32435 * 0.02562 * 13 12 11 15 15 C 1.39698 * 119.90253 * 0.02562 * 14 13 12 16 16 C 1.47286 * 120.19714 * 180.02562 * 15 14 13 17 17 N 1.29884 * 119.99673 * 180.02562 * 16 15 14 18 18 N 1.40098 * 119.99500 * 179.97438 * 17 16 15 19 19 C 1.34778 * 119.99585 * 179.97438 * 18 17 16 20 20 O 1.21613 * 120.00095 * 0.02562 * 19 18 17 21 21 C 1.47711 * 120.00095 * 180.02562 * 19 18 17 22 22 C 1.40685 * 119.75178 * 0.24945 * 21 19 18 23 23 C 1.35713 * 120.84410 * 180.30618 * 22 21 19 24 24 C 1.40707 * 120.02600 * 359.72575 * 23 22 21 25 25 C 1.40477 * 121.04007 * 179.97438 * 24 23 22 26 26 C 1.36145 * 119.72323 * 180.02562 * 25 24 23 27 27 C 1.39366 * 121.00961 * 0.02562 * 26 25 24 28 28 C 1.36089 * 120.95314 * 359.97438 * 27 26 25 29 29 C 1.40657 * 119.66127 * 0.02562 * 28 27 26 30 30 C 1.38519 * 119.75325 * 180.02562 * 21 19 18 31 31 H 0.96993 * 120.00370 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.95598 * 359.97261 * 11 10 9 33 33 H 1.07997 * 119.79251 * 179.69508 * 12 11 10 34 34 H 1.08006 * 119.83584 * 180.02562 * 13 12 11 35 35 H 1.07997 * 120.05426 * 179.97438 * 14 13 12 36 36 H 1.08001 * 120.00373 * 359.97438 * 16 15 14 37 37 H 0.96998 * 120.00452 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.57708 * 0.03658 * 22 21 19 39 39 H 1.07998 * 119.98470 * 179.74825 * 23 22 21 40 40 H 1.07999 * 120.14338 * 0.05148 * 25 24 23 41 41 H 1.08002 * 119.49530 * 180.02562 * 26 25 24 42 42 H 1.08002 * 119.52570 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.16844 * 180.02562 * 28 27 26 44 44 H 1.08001 * 120.27820 * 359.96905 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6967 1.2124 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0695 -3.5029 0.1079 11 6 3.4552 -3.4401 0.0952 12 6 4.2018 -4.5975 0.1984 13 6 3.5756 -5.8270 0.3220 14 6 2.1994 -5.9083 0.3426 15 6 1.4314 -4.7461 0.2380 16 6 -0.0392 -4.8254 0.2600 17 7 -0.7494 -3.7424 0.1619 18 7 -2.1482 -3.8180 0.1822 19 6 -2.8853 -2.6941 0.0810 20 8 -2.3361 -1.6146 -0.0284 21 6 -4.3601 -2.7736 0.1030 22 6 -4.9899 -4.0246 0.2351 23 6 -6.3433 -4.1240 0.2517 24 6 -7.1357 -2.9664 0.1418 25 6 -8.5382 -3.0446 0.1560 26 6 -9.2788 -1.9074 0.0473 27 6 -8.6671 -0.6615 -0.0790 28 6 -7.3112 -0.5460 -0.0966 29 6 -6.5129 -1.6989 0.0133 30 6 -5.1126 -1.6154 -0.0019 31 1 -0.4850 0.8400 -0.0004 32 1 3.9509 -2.4853 -0.0009 33 1 5.2803 -4.5436 0.1830 34 1 4.1684 -6.7262 0.4025 35 1 1.7158 -6.8692 0.4387 36 1 -0.5269 -5.7842 0.3567 37 1 -2.5863 -4.6790 0.2699 38 1 -4.3887 -4.9178 0.3200 39 1 -6.8123 -5.0919 0.3496 40 1 -9.0270 -4.0027 0.2531 41 1 -10.3568 -1.9717 0.0590 42 1 -9.2779 0.2252 -0.1631 43 1 -6.8505 0.4259 -0.1946 44 1 -4.6253 -0.6564 -0.0990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052410926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:32 Heat of formation + Delta-G solvation = 50.640821 kcal Electronic energy + Delta-G solvation = -29903.100522 eV Core-core repulsion = 25751.980715 eV Total energy + Delta-G solvation = -4151.119807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.126 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.53555 -40.66391 -40.13846 -38.01682 -37.32000 -37.02002 -34.18989 -33.77587 -33.67145 -31.76293 -30.78409 -30.22530 -29.92629 -27.21991 -25.73843 -24.21996 -24.11320 -23.15542 -22.88572 -21.78545 -21.46057 -19.64857 -19.34275 -18.49294 -18.21352 -17.96213 -17.12623 -16.58117 -16.43169 -16.06247 -16.01631 -15.76482 -15.67605 -15.37158 -15.16984 -14.99657 -14.62562 -14.53540 -14.35737 -14.20412 -14.06464 -14.01649 -13.45817 -13.41574 -12.94879 -12.83693 -12.42986 -12.37562 -12.25448 -12.21212 -12.18681 -12.07569 -11.81725 -11.21301 -11.00579 -10.88419 -10.66639 -10.53769 -10.41772 -9.66979 -9.24655 -8.91799 -8.63089 -8.15321 -5.91487 -0.64899 -0.18152 0.19253 0.89026 0.97031 1.32125 1.43746 1.47375 1.48146 1.68243 1.85771 2.22222 2.51044 3.02516 3.13687 3.37731 3.52076 3.60392 3.65713 3.81270 3.86391 3.97261 4.07518 4.16009 4.20013 4.29613 4.34335 4.39465 4.45985 4.47269 4.64153 4.79703 4.82406 4.90456 4.98362 5.07306 5.12356 5.17870 5.22804 5.25436 5.30055 5.36079 5.54844 5.56774 5.73060 5.77549 5.78359 5.85950 6.00926 6.10577 6.32643 6.35589 6.87923 7.13326 7.74329 7.98529 8.91639 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002612 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.254510 B =10718.738614 C =13232.976857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C -0.016 4.016 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.093 0.907 9 O -0.166 6.166 10 C 0.127 3.873 11 C -0.265 4.265 12 C -0.056 4.056 13 C -0.205 4.205 14 C -0.031 4.031 15 C -0.163 4.163 16 C 0.104 3.896 17 N -0.248 5.248 18 N -0.577 5.577 19 C 0.535 3.465 20 O -0.499 6.499 21 C -0.133 4.133 22 C -0.102 4.102 23 C -0.095 4.095 24 C -0.052 4.052 25 C -0.110 4.110 26 C -0.108 4.108 27 C -0.115 4.115 28 C -0.121 4.121 29 C -0.077 4.077 30 C -0.057 4.057 31 H 0.259 0.741 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.390 0.610 38 H 0.149 0.851 39 H 0.175 0.825 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.149 0.851 43 H 0.128 0.872 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.218 -13.309 1.195 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.220 4.220 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.512 4.512 8 H 0.110 0.890 9 O -0.067 6.067 10 C 0.071 3.929 11 C -0.284 4.284 12 C -0.075 4.075 13 C -0.224 4.224 14 C -0.052 4.052 15 C -0.167 4.167 16 C -0.105 4.105 17 N -0.054 5.054 18 N -0.322 5.322 19 C 0.322 3.678 20 O -0.370 6.370 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.053 4.053 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.132 4.132 28 C -0.139 4.139 29 C -0.077 4.077 30 C -0.076 4.076 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.172 0.828 37 H 0.231 0.769 38 H 0.166 0.834 39 H 0.192 0.808 40 H 0.180 0.820 41 H 0.176 0.824 42 H 0.167 0.833 43 H 0.146 0.854 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.456 -11.291 0.992 19.982 hybrid contribution 0.634 0.397 0.020 0.748 sum -15.822 -10.894 1.011 19.237 Atomic orbital electron populations 1.70531 1.06510 1.27041 1.43401 1.26472 0.96838 1.01992 0.96702 0.84923 0.77473 0.75881 0.79522 1.18546 1.20355 1.18555 1.21649 0.91962 0.82284 1.55333 0.89018 1.84200 1.34012 1.11429 1.77047 1.20295 0.91439 0.88469 0.92740 1.21233 0.93222 1.00230 1.13751 1.21290 1.00145 0.91707 0.94365 1.21071 0.94370 0.97844 1.09106 1.21244 0.93745 0.96005 0.94159 1.18016 0.90385 0.91700 1.16591 1.24680 0.93525 0.95037 0.97242 1.75916 0.89234 1.27120 1.13164 1.46748 1.02245 1.09660 1.73572 1.18914 0.87408 0.83782 0.77694 1.91142 1.72975 1.28212 1.44714 1.19793 0.90217 0.96219 1.07515 1.21084 0.96206 0.95397 0.99297 1.21322 0.92468 0.99053 0.98354 1.18571 0.95354 0.92335 0.99002 1.21432 0.91067 1.00882 0.99352 1.21373 1.01908 0.91799 0.97488 1.21252 0.93971 0.99531 0.98472 1.21303 0.95054 0.97376 1.00153 1.18225 0.91959 0.95158 1.02392 1.21475 0.93320 0.97842 0.94963 0.93239 0.87133 0.84127 0.82594 0.81630 0.82798 0.76897 0.83387 0.80799 0.81960 0.82401 0.83282 0.85367 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -56.14 12.56 21.61 0.27 -55.87 16 2 C -0.02 -0.99 5.49 84.83 0.47 -0.53 16 3 Si 1.00 47.09 29.55 68.60 2.03 49.12 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.44 -27.11 9.48 67.92 0.64 -26.46 16 8 H 0.09 5.29 5.21 -2.91 -0.02 5.28 16 9 O -0.17 -10.39 7.64 -20.90 -0.16 -10.55 16 10 C 0.13 6.53 6.66 22.90 0.15 6.68 16 11 C -0.26 -11.95 9.16 22.36 0.20 -11.74 16 12 C -0.06 -1.90 10.03 22.31 0.22 -1.67 16 13 C -0.21 -5.82 10.02 22.25 0.22 -5.60 16 14 C -0.03 -0.94 9.79 22.54 0.22 -0.72 16 15 C -0.16 -6.74 5.88 -20.03 -0.12 -6.85 16 16 C 0.10 4.05 10.75 87.36 0.94 4.99 16 17 N -0.25 -12.17 8.90 -52.25 -0.47 -12.64 16 18 N -0.58 -23.37 6.21 -175.65 -1.09 -24.46 16 19 C 0.53 24.30 7.88 86.75 0.68 24.99 16 20 O -0.50 -29.33 15.53 -4.07 -0.06 -29.39 16 21 C -0.13 -4.57 5.87 -20.11 -0.12 -4.69 16 22 C -0.10 -2.41 9.44 22.28 0.21 -2.20 16 23 C -0.09 -1.75 9.73 22.29 0.22 -1.53 16 24 C -0.05 -1.12 5.75 -21.25 -0.12 -1.24 16 25 C -0.11 -1.59 9.76 22.33 0.22 -1.37 16 26 C -0.11 -1.42 9.95 22.05 0.22 -1.20 16 27 C -0.11 -1.88 9.95 22.04 0.22 -1.66 16 28 C -0.12 -2.77 9.77 22.36 0.22 -2.55 16 29 C -0.08 -2.10 5.74 -21.31 -0.12 -2.23 16 30 C -0.06 -1.95 9.34 22.84 0.21 -1.73 16 31 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 32 H 0.11 5.21 5.64 -2.91 -0.02 5.19 16 33 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.16 4.01 8.02 -2.91 -0.02 3.99 16 37 H 0.39 11.13 6.63 -213.32 -1.42 9.71 16 38 H 0.15 2.59 6.34 -2.91 -0.02 2.58 16 39 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.12 4.48 7.61 -2.91 -0.02 4.46 16 Total: -1.00 -94.83 384.37 4.96 -89.86 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.35 Total: 31.25 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.79 Total: -37.33 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -1.28 Total: -92.97 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.22 Total: -39.94 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -94.83 4.96 -89.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052410926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.506 kcal (2) G-P(sol) polarization free energy of solvation -94.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds