Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48507 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47065 * 299.99467 * 3 2 1 6 6 H 1.48498 * 109.47563 * 59.99915 * 3 2 1 7 7 C 1.37875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47238 * 179.97438 * 9 7 2 11 11 O 1.42900 * 109.47268 * 180.02562 * 10 9 7 12 12 C 1.35894 * 117.00069 * 179.97438 * 11 10 9 13 13 C 1.38810 * 120.01751 * 359.72991 * 12 11 10 14 14 C 1.38179 * 120.07840 * 179.76577 * 13 12 11 15 15 C 1.38164 * 120.12690 * 0.50696 * 14 13 12 16 16 C 1.38889 * 120.03741 * 359.74354 * 15 14 13 17 17 N 1.39931 * 120.03771 * 179.97438 * 16 15 14 18 18 C 1.34777 * 120.00155 * 213.11996 * 17 16 15 19 19 O 1.21593 * 119.99902 * 5.19047 * 18 17 16 20 20 N 1.34774 * 120.00292 * 185.18886 * 18 17 16 21 21 C 1.39990 * 120.00106 * 185.17523 * 20 18 17 22 22 C 1.38862 * 120.05583 * 212.78359 * 21 20 18 23 23 C 1.38113 * 119.93896 * 179.79082 * 22 21 20 24 24 C 1.38378 * 120.05761 * 0.48592 * 23 22 21 25 25 Cl 1.73598 * 119.94232 * 179.72125 * 24 23 22 26 26 C 1.38383 * 120.11437 * 359.74397 * 24 23 22 27 27 C 1.38105 * 120.06009 * 0.02562 * 26 24 23 28 28 C 1.38587 * 120.02207 * 180.02562 * 12 11 10 29 29 H 0.96998 * 120.00453 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47149 * 60.00428 * 9 7 2 31 31 H 1.09000 * 109.47559 * 300.00518 * 9 7 2 32 32 H 1.08997 * 109.46768 * 60.00151 * 10 9 7 33 33 H 1.09004 * 109.47134 * 300.00250 * 10 9 7 34 34 H 1.07996 * 119.96076 * 359.97438 * 13 12 11 35 35 H 1.08008 * 119.93145 * 180.25212 * 14 13 12 36 36 H 1.08001 * 119.97874 * 179.76800 * 15 14 13 37 37 H 0.97001 * 119.99914 * 33.12723 * 17 16 15 38 38 H 0.97004 * 119.99646 * 5.17952 * 20 18 17 39 39 H 1.08000 * 120.02702 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.96905 * 180.22671 * 23 22 21 41 41 H 1.07997 * 119.96882 * 180.02562 * 26 24 23 42 42 H 1.08002 * 120.03472 * 179.97438 * 27 26 24 43 43 H 1.08000 * 120.06115 * 359.95734 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 8 1.5310 -4.8996 0.0020 12 6 2.2712 -6.0392 0.0013 13 6 3.6574 -5.9670 -0.0055 14 6 4.4113 -7.1250 -0.0013 15 6 3.7881 -8.3581 -0.0010 16 6 2.4014 -8.4364 0.0006 17 7 1.7703 -9.6853 0.0005 18 6 0.5931 -9.8454 -0.6360 19 8 0.1258 -8.9322 -1.2888 20 7 -0.0660 -11.0177 -0.5490 21 6 -1.2323 -11.2221 -1.2958 22 6 -2.2521 -12.0169 -0.7894 23 6 -3.4035 -12.2134 -1.5264 24 6 -3.5372 -11.6272 -2.7727 25 17 -4.9827 -11.8821 -3.6997 26 6 -2.5203 -10.8386 -3.2818 27 6 -1.3689 -10.6351 -2.5469 28 6 1.6425 -7.2743 0.0012 29 1 -0.4851 0.8400 -0.0004 30 1 0.6242 -2.5575 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 2.8727 -3.6038 0.8909 33 1 2.8715 -3.6046 -0.8891 34 1 4.1473 -5.0045 -0.0107 35 1 5.4897 -7.0660 -0.0025 36 1 4.3797 -9.2617 -0.0015 37 1 2.1800 -10.4357 0.4585 38 1 0.2677 -11.7198 0.0312 39 1 -2.1466 -12.4778 0.1816 40 1 -4.1985 -12.8284 -1.1314 41 1 -2.6272 -10.3820 -4.2546 42 1 -0.5753 -10.0199 -2.9447 43 1 0.5641 -7.3325 0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055329130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = -18.307457 kcal Electronic energy + Delta-G solvation = -27477.229896 eV Core-core repulsion = 23320.687418 eV Total energy + Delta-G solvation = -4156.542478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.103 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36054 -39.90439 -39.06640 -37.40260 -36.72910 -35.04506 -34.72619 -33.34055 -31.45505 -30.88888 -30.24089 -29.28809 -28.63185 -25.07361 -23.98224 -23.40404 -22.58702 -22.06097 -21.24855 -20.41168 -18.98389 -18.60706 -17.84140 -16.92379 -16.34114 -16.16629 -15.90770 -15.68988 -15.36784 -15.29131 -14.93698 -14.69904 -14.53511 -14.37896 -13.87137 -13.83197 -13.47460 -13.07442 -12.78855 -12.64795 -12.32923 -12.30027 -11.88119 -11.81195 -11.70392 -11.45364 -11.17502 -10.95111 -10.84449 -10.64407 -10.54162 -10.49650 -10.12033 -9.82883 -9.63539 -9.41077 -9.26393 -8.50900 -8.43762 -8.24621 -7.84385 -6.08236 -4.12945 0.71033 0.92788 1.35047 1.61285 1.82559 2.07442 2.67950 3.27822 3.32753 3.34603 3.38142 3.51399 3.92515 3.95374 4.38901 4.43044 4.49981 4.85178 4.93551 4.97684 5.05766 5.14594 5.28061 5.33739 5.39041 5.49094 5.55769 5.62641 5.74208 5.82712 5.89596 6.00947 6.02876 6.05786 6.16091 6.30158 6.47207 6.49993 6.57482 6.60525 6.74747 6.94480 7.39253 7.53440 7.67108 7.83080 8.03668 8.08362 8.25917 8.92972 9.51233 11.03373 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.009921 B = 0.001840 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.669362 B =15214.404376 C =17654.841761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.166 3.834 13 C -0.225 4.225 14 C -0.060 4.060 15 C -0.196 4.196 16 C 0.192 3.808 17 N -0.677 5.677 18 C 0.700 3.300 19 O -0.541 6.541 20 N -0.683 5.683 21 C 0.173 3.827 22 C -0.137 4.137 23 C -0.089 4.089 24 C -0.053 4.053 25 Cl -0.073 7.073 26 C -0.087 4.087 27 C -0.108 4.108 28 C -0.163 4.163 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.408 0.592 38 H 0.409 0.591 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -31.514 -1.031 31.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.224 6.224 12 C 0.118 3.882 13 C -0.244 4.244 14 C -0.079 4.079 15 C -0.216 4.216 16 C 0.098 3.902 17 N -0.324 5.324 18 C 0.401 3.599 19 O -0.414 6.414 20 N -0.331 5.331 21 C 0.078 3.922 22 C -0.158 4.158 23 C -0.109 4.109 24 C -0.081 4.081 25 Cl -0.044 7.044 26 C -0.106 4.106 27 C -0.129 4.129 28 C -0.184 4.184 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.244 0.756 38 H 0.245 0.755 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.318 -30.535 -1.690 30.584 hybrid contribution 0.895 0.263 0.501 1.059 sum 0.577 -30.273 -1.189 30.301 Atomic orbital electron populations 1.69989 1.06099 1.26851 1.49752 1.25002 0.94907 0.99403 0.94966 0.86432 0.79960 0.83283 0.77702 1.19642 1.20842 1.20862 1.21004 0.93069 0.90181 1.52111 0.92287 1.19137 0.94206 0.89002 0.98955 1.23359 0.97103 0.80736 0.99715 1.86199 1.36498 1.13134 1.86587 1.18948 0.89841 0.87317 0.92144 1.21408 0.93096 1.00014 1.09903 1.20653 0.99417 0.91162 0.96668 1.20561 0.91826 0.98333 1.10919 1.17000 0.90740 0.83009 0.99491 1.42458 1.21524 1.12006 1.56428 1.15900 0.80810 0.82701 0.80477 1.91064 1.67078 1.39778 1.43483 1.42587 1.26013 1.16571 1.47952 1.17535 0.86038 0.98008 0.90625 1.20776 0.92148 1.02407 1.00450 1.20799 0.97799 0.99605 0.92669 1.20911 0.89903 1.02769 0.94470 1.98373 1.37030 1.95764 1.73273 1.20989 0.91946 0.97004 1.00662 1.21217 0.98996 1.00358 0.92290 1.20286 1.01278 0.88579 1.08217 0.92756 0.95325 0.95380 0.93025 0.93011 0.84979 0.85605 0.86078 0.75648 0.75508 0.84707 0.84523 0.84445 0.83496 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.06 1.42 4.68 37.16 0.17 1.59 16 11 O -0.31 -6.71 10.13 -19.41 -0.20 -6.91 16 12 C 0.17 3.00 6.68 -39.24 -0.26 2.74 16 13 C -0.22 -3.46 9.04 -39.39 -0.36 -3.81 16 14 C -0.06 -0.73 10.03 -39.63 -0.40 -1.13 16 15 C -0.20 -2.16 9.96 -39.37 -0.39 -2.56 16 16 C 0.19 2.44 6.28 -83.72 -0.53 1.92 16 17 N -0.68 -6.19 5.35 -14.24 -0.08 -6.26 16 18 C 0.70 7.70 8.04 -86.92 -0.70 7.00 16 19 O -0.54 -8.50 11.67 5.28 0.06 -8.44 16 20 N -0.68 -5.03 5.35 -14.21 -0.08 -5.10 16 21 C 0.17 1.53 6.29 -83.67 -0.53 1.01 16 22 C -0.14 -0.95 9.96 -39.40 -0.39 -1.34 16 23 C -0.09 -0.67 9.82 -39.58 -0.39 -1.05 16 24 C -0.05 -0.47 6.32 -39.48 -0.25 -0.72 16 25 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 26 C -0.09 -0.83 9.82 -39.58 -0.39 -1.22 16 27 C -0.11 -1.13 8.66 -39.40 -0.34 -1.47 16 28 C -0.16 -2.70 8.59 -39.25 -0.34 -3.04 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.03 0.82 8.14 -51.92 -0.42 0.39 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.05 7.67 -51.93 -0.40 0.66 16 33 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 34 H 0.13 1.98 6.29 -52.49 -0.33 1.65 16 35 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.41 1.94 8.84 -40.82 -0.36 1.58 16 38 H 0.41 1.34 8.84 -40.82 -0.36 0.98 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.15 1.76 6.39 -52.49 -0.34 1.43 16 43 H 0.14 2.59 6.39 -52.49 -0.34 2.25 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -34.59 384.39 -10.94 -45.53 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.02 Total: 2.28 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -5.64 Total: -15.11 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.58 Total: -37.45 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.14 Total: -15.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.59 -10.94 -45.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055329130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.223 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds