Wall clock time and date at job start Tue Mar 31 2020 07:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46792 * 2 1 4 4 N 1.46498 * 109.47121 * 119.99527 * 2 1 3 5 5 C 1.46500 * 120.00048 * 294.50566 * 4 2 1 6 6 C 1.50699 * 109.47646 * 92.73092 * 5 4 2 7 7 C 1.38268 * 119.97647 * 263.22199 * 6 5 4 8 8 C 1.38206 * 120.03672 * 179.75939 * 7 6 5 9 9 C 1.38353 * 119.99853 * 0.51223 * 8 7 6 10 10 Cl 1.73596 * 120.01795 * 179.71715 * 9 8 7 11 11 C 1.38446 * 119.96026 * 359.74433 * 9 8 7 12 12 Cl 1.73599 * 120.01563 * 180.02562 * 11 9 8 13 13 C 1.38200 * 119.98196 * 83.49152 * 6 5 4 14 14 C 1.34780 * 120.00144 * 114.50193 * 4 2 1 15 15 O 1.21282 * 120.00031 * 180.02562 * 14 4 2 16 16 C 1.50700 * 119.99739 * 0.27329 * 14 4 2 17 17 S 1.80998 * 109.47083 * 179.72272 * 16 14 4 18 18 C 1.76202 * 99.99768 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00493 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99701 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00080 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99886 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46913 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46909 * 119.99821 * 22 20 18 25 25 H 1.48500 * 109.47080 * 240.00140 * 22 20 18 26 26 H 1.08995 * 109.47638 * 307.44831 * 1 2 3 27 27 H 1.09001 * 109.47087 * 67.45748 * 1 2 3 28 28 H 1.09007 * 109.46964 * 187.44637 * 1 2 3 29 29 H 1.08995 * 109.47804 * 239.99708 * 2 1 3 30 30 H 1.08995 * 109.46743 * 174.51483 * 3 2 1 31 31 H 1.08996 * 109.46938 * 294.50997 * 3 2 1 32 32 H 1.09000 * 109.47082 * 54.51495 * 3 2 1 33 33 H 1.09005 * 109.47124 * 212.72653 * 5 4 2 34 34 H 1.09001 * 109.47415 * 332.72196 * 5 4 2 35 35 H 1.07999 * 119.98205 * 359.97438 * 7 6 5 36 36 H 1.07997 * 120.00396 * 180.24978 * 8 7 6 37 37 H 1.07995 * 120.00424 * 359.95962 * 13 6 5 38 38 H 1.09000 * 109.47453 * 299.72931 * 16 14 4 39 39 H 1.09006 * 109.46589 * 59.72315 * 16 14 4 40 40 H 0.97004 * 120.00246 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7663 -0.1236 2.5234 6 6 0.4952 -0.7062 3.0855 7 6 -0.6949 -0.0128 2.9648 8 6 -1.8623 -0.5482 3.4754 9 6 -1.8385 -1.7736 4.1172 10 17 -3.3032 -2.4431 4.7653 11 6 -0.6458 -2.4653 4.2428 12 17 -0.6144 -4.0034 5.0472 13 6 0.5208 -1.9304 3.7262 14 6 2.6993 -1.8473 1.0758 15 8 3.1032 -2.4192 2.0661 16 6 2.9638 -2.4273 -0.2898 17 16 3.8995 -3.9674 -0.1203 18 6 4.0642 -4.4136 -1.8169 19 1 3.6394 -3.7838 -2.5847 20 6 4.7398 -5.5745 -2.1667 21 7 5.2578 -6.3418 -1.2311 22 14 4.9150 -6.0472 -3.9655 23 1 4.2498 -5.0252 -4.8129 24 1 6.3552 -6.1231 -4.3193 25 1 4.2786 -7.3694 -4.1940 26 1 -0.3634 0.6248 0.8158 27 1 -0.3633 0.3940 -0.9492 28 1 -0.3633 -1.0191 0.1332 29 1 1.8934 -0.5138 -0.8899 30 1 3.1255 1.4442 0.0982 31 1 1.7591 1.9272 -0.9350 32 1 1.5986 1.9840 0.8368 33 1 2.5991 -0.3629 3.1848 34 1 1.6656 0.9587 2.4431 35 1 -0.7130 0.9460 2.4681 36 1 -2.7923 -0.0081 3.3773 37 1 1.4514 -2.4697 3.8234 38 1 2.0159 -2.6309 -0.7879 39 1 3.5396 -1.7155 -0.8815 40 1 5.7297 -7.1533 -1.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055737132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:43 Heat of formation + Delta-G solvation = -44.239825 kcal Electronic energy + Delta-G solvation = -25211.107591 eV Core-core repulsion = 21396.041961 eV Total energy + Delta-G solvation = -3815.065630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 361.041 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46014 -40.13484 -37.92803 -37.57158 -37.32238 -34.59265 -33.67047 -32.28305 -31.89671 -30.66287 -28.05824 -27.72380 -26.85302 -24.01395 -22.96040 -22.86778 -20.35644 -19.41359 -18.45019 -18.19797 -17.22445 -16.99499 -16.89049 -16.70172 -16.33603 -15.85237 -15.19236 -15.09589 -14.89407 -14.86418 -14.77115 -14.49029 -14.22940 -13.55441 -13.44980 -13.20535 -12.98228 -12.95631 -12.92216 -12.90860 -12.76714 -12.71577 -12.49992 -12.21478 -12.18335 -12.00937 -11.94154 -11.72948 -11.60458 -11.16590 -10.86706 -10.24975 -9.99447 -9.81297 -9.62989 -8.66722 -8.35317 -6.12974 -0.17336 0.06233 0.78869 1.17607 1.26277 1.40345 1.45900 1.56598 1.59786 2.04262 2.26488 2.53339 2.98981 3.24983 3.56254 3.63992 3.70586 3.89747 4.03029 4.08083 4.19172 4.21699 4.30063 4.37426 4.43909 4.46469 4.68480 4.75013 4.83851 4.86910 4.92236 4.96689 5.06565 5.13027 5.28534 5.36542 5.41043 5.46582 5.57678 5.65673 6.19020 6.30631 7.06138 7.17373 8.73990 Molecular weight = 361.04amu Principal moments of inertia in cm(-1) A = 0.010877 B = 0.002939 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.723648 B = 9526.259941 C =10990.991639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 C -0.157 4.157 4 N -0.594 5.594 5 C 0.153 3.847 6 C -0.088 4.088 7 C -0.075 4.075 8 C -0.095 4.095 9 C -0.039 4.039 10 Cl -0.054 7.054 11 C -0.050 4.050 12 Cl -0.067 7.067 13 C -0.096 4.096 14 C 0.533 3.467 15 O -0.555 6.555 16 C -0.124 4.124 17 S -0.149 6.149 18 C -0.545 4.545 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.275 1.275 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 21.574 6.244 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 C -0.214 4.214 4 N -0.327 5.327 5 C 0.031 3.969 6 C -0.089 4.089 7 C -0.093 4.093 8 C -0.114 4.114 9 C -0.067 4.067 10 Cl -0.025 7.025 11 C -0.078 4.078 12 Cl -0.038 7.038 13 C -0.116 4.116 14 C 0.320 3.680 15 O -0.433 6.433 16 C -0.275 4.275 17 S 0.078 5.922 18 C -0.692 4.692 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.201 1.201 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.200 0.800 36 H 0.191 0.809 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.492 20.408 7.870 27.393 hybrid contribution -0.041 -0.960 -1.592 1.860 sum -16.533 19.447 6.277 26.286 Atomic orbital electron populations 1.22378 0.93381 1.01952 1.04445 1.21552 0.95730 0.94797 0.86487 1.22147 1.01323 0.93496 1.04453 1.48082 1.54692 1.22172 1.07794 1.20497 0.93552 0.99681 0.83151 1.20425 0.97520 0.93802 0.97187 1.21547 0.89568 1.01144 0.97030 1.21394 1.01192 0.92412 0.96382 1.21015 0.86419 0.96608 1.02673 1.98383 1.33859 1.85486 1.84802 1.20945 0.94632 0.89695 1.02491 1.98385 1.98825 1.28522 1.78104 1.21161 0.96657 0.96544 0.97201 1.20077 0.77199 0.80849 0.89864 1.90668 1.51951 1.60571 1.40063 1.23377 1.04406 1.01516 0.98193 1.85564 1.70596 1.23807 1.12228 1.23213 1.41878 1.12106 0.92038 0.90070 1.26113 0.94029 0.95067 1.03889 1.70188 1.35168 1.14107 1.35280 0.84928 0.78305 0.78400 0.76470 1.17918 1.19856 1.20051 0.89544 0.89597 0.94556 0.89817 0.93056 0.89389 0.89901 0.90630 0.84611 0.80047 0.80874 0.86146 0.88344 0.87675 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.31 71.98 0.60 -1.46 16 2 C 0.12 1.93 3.16 44.99 0.14 2.07 16 3 C -0.16 -1.61 8.92 71.99 0.64 -0.97 16 4 N -0.59 -14.07 2.38 -802.12 -1.91 -15.97 16 5 C 0.15 2.88 5.08 85.63 0.43 3.31 16 6 C -0.09 -1.72 5.03 -19.87 -0.10 -1.82 16 7 C -0.07 -0.92 7.82 22.27 0.17 -0.75 16 8 C -0.10 -1.34 9.83 22.29 0.22 -1.12 16 9 C -0.04 -0.83 6.32 22.35 0.14 -0.69 16 10 Cl -0.05 -1.10 27.96 -2.72 -0.08 -1.18 16 11 C -0.05 -1.32 6.32 22.35 0.14 -1.18 16 12 Cl -0.07 -1.94 27.96 -2.72 -0.08 -2.01 16 13 C -0.10 -2.63 9.29 22.29 0.21 -2.42 16 14 C 0.53 19.22 7.67 87.66 0.67 19.89 16 15 O -0.55 -24.62 14.05 -3.03 -0.04 -24.66 16 16 C -0.12 -4.94 4.47 71.24 0.32 -4.63 16 17 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 18 C -0.54 -31.20 9.50 67.95 0.65 -30.55 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.79 5.49 84.86 0.47 1.25 16 21 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 22 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 H 0.09 0.64 4.70 -2.39 -0.01 0.63 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 1.64 5.79 -2.39 -0.01 1.63 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.47 6.75 -2.39 -0.02 0.45 16 33 H 0.08 1.78 7.49 -2.38 -0.02 1.77 16 34 H 0.14 1.30 6.16 -2.39 -0.01 1.29 16 35 H 0.18 0.69 6.46 -2.91 -0.02 0.67 16 36 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.12 4.12 6.82 -2.91 -0.02 4.10 16 38 H 0.10 3.69 7.89 -2.40 -0.02 3.67 16 39 H 0.11 3.81 7.68 -2.39 -0.02 3.79 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -78.07 370.73 4.83 -73.24 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.08 Total: 9.37 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 4.70 Total: -19.06 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.62 Total: -71.98 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.15 Total: -3.19 kcal Total: -78.07 4.83 -73.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055737132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.999 kcal (2) G-P(sol) polarization free energy of solvation -78.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds