Wall clock time and date at job start Tue Mar 31 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48507 * 109.47184 * 270.00673 * 3 2 1 5 5 H 1.48502 * 109.46957 * 30.00632 * 3 2 1 6 6 H 1.48496 * 109.46882 * 150.00283 * 3 2 1 7 7 C 1.38796 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99685 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00108 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00034 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47106 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99931 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99975 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00262 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.38264 * 119.97119 * 270.02347 * 16 15 14 18 18 C 1.38193 * 120.04489 * 179.97438 * 17 16 15 19 19 C 1.38452 * 119.98227 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.02958 * 180.27724 * 19 18 17 21 21 C 1.38525 * 119.94116 * 0.02562 * 19 18 17 22 22 Br 1.89105 * 120.02017 * 180.02562 * 21 19 18 23 23 C 1.38217 * 119.96898 * 90.00526 * 16 15 14 24 24 H 0.97001 * 120.00205 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47048 * 59.99918 * 10 9 7 26 26 H 1.08999 * 109.47129 * 300.00160 * 10 9 7 27 27 H 0.96998 * 119.99964 * 359.97438 * 13 11 10 28 28 H 1.09002 * 109.47111 * 59.99965 * 14 13 11 29 29 H 1.08999 * 109.47094 * 300.00190 * 14 13 11 30 30 H 1.09002 * 109.46983 * 59.99962 * 15 14 13 31 31 H 1.08999 * 109.47241 * 300.00175 * 15 14 13 32 32 H 1.08002 * 119.97631 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.00964 * 180.02562 * 18 17 16 34 34 H 1.07992 * 119.99416 * 0.03953 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3441 -2.2961 -0.0025 13 7 6.0458 -4.4945 -0.0016 14 6 7.4909 -4.7356 -0.0021 15 6 7.7566 -6.2423 -0.0007 16 6 9.2430 -6.4902 -0.0020 17 6 9.9232 -6.6047 -1.2003 18 6 11.2864 -6.8315 -1.2031 19 6 11.9717 -6.9437 -0.0053 20 9 13.3053 -7.1599 -0.0070 21 6 11.2895 -6.8289 1.1948 22 35 12.2234 -6.9811 2.8322 23 6 9.9252 -6.6026 1.1949 24 1 -0.4850 0.8400 0.0004 25 1 3.6434 -3.4317 -0.8907 26 1 3.6441 -3.4313 0.8893 27 1 5.4292 -5.2433 -0.0001 28 1 7.9342 -4.2880 0.8874 29 1 7.9334 -4.2891 -0.8926 30 1 7.3131 -6.6902 -0.8900 31 1 7.3141 -6.6884 0.8899 32 1 9.3888 -6.5168 -2.1346 33 1 11.8172 -6.9204 -2.1395 34 1 9.3928 -6.5134 2.1302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055865812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:26 Heat of formation + Delta-G solvation = -85.907724 kcal Electronic energy + Delta-G solvation = -19879.350130 eV Core-core repulsion = 16283.880489 eV Total energy + Delta-G solvation = -3595.469642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 360.989 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.07502 -40.77819 -40.20987 -36.48677 -34.65771 -33.95592 -33.20401 -31.27580 -30.46224 -28.71436 -27.81697 -24.63024 -24.01296 -22.19118 -21.72310 -19.86950 -18.79984 -17.86393 -17.80052 -17.33666 -17.02831 -16.81676 -16.68875 -16.33954 -15.62887 -15.29840 -15.13890 -14.93491 -14.71725 -14.63456 -14.34261 -13.93081 -13.57835 -13.33435 -13.02107 -12.99293 -12.87160 -12.58807 -12.45635 -12.01713 -11.89424 -11.84637 -11.40811 -11.15830 -11.00310 -10.50942 -10.12446 -10.01612 -9.65750 -8.97656 -8.50234 -6.20609 -0.18362 0.01390 0.43488 1.01641 1.32351 1.48383 1.57920 1.60153 2.19610 2.26307 2.40857 2.74297 2.88094 3.02829 3.55395 3.68220 3.93289 4.00577 4.05881 4.14519 4.21456 4.28616 4.48655 4.51429 4.60527 4.79636 4.85904 4.92861 5.04713 5.11204 5.39477 5.43837 5.65933 5.72189 6.13138 6.51589 6.95289 7.24180 8.61944 Molecular weight = 360.99amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.001699 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.302750 B =16477.263237 C =16886.622038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.111 4.111 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.710 5.710 14 C 0.124 3.876 15 C -0.079 4.079 16 C -0.083 4.083 17 C -0.063 4.063 18 C -0.144 4.144 19 C 0.101 3.899 20 F -0.137 7.137 21 C -0.145 4.145 22 Br -0.040 7.040 23 C -0.063 4.063 24 H 0.276 0.724 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.420 0.580 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.437 -22.334 0.561 33.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.161 1.161 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.262 4.262 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.364 5.364 14 C 0.001 3.999 15 C -0.116 4.116 16 C -0.085 4.085 17 C -0.082 4.082 18 C -0.163 4.163 19 C 0.080 3.920 20 F -0.115 7.115 21 C -0.225 4.225 22 Br 0.045 6.955 23 C -0.082 4.082 24 H 0.086 0.914 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.258 0.742 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.186 0.814 33 H 0.182 0.818 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 26.961 -20.785 1.188 34.064 hybrid contribution -1.139 -0.541 -0.170 1.272 sum 25.822 -21.326 1.018 33.506 Atomic orbital electron populations 1.70015 1.07267 1.28972 1.49238 1.25565 0.95276 1.02253 0.93006 0.85873 0.80680 0.79680 0.80175 1.18730 1.18507 1.16082 1.22462 0.90244 0.96680 1.58049 0.91788 1.84762 1.06428 1.06648 1.97594 1.23279 0.95971 0.99305 1.07640 1.19956 0.89338 0.83500 0.75285 1.90702 1.59385 1.44035 1.50269 1.45680 1.08695 1.06771 1.75294 1.21372 0.79907 0.96611 1.02055 1.20748 0.90692 0.93539 1.06619 1.19879 0.96413 0.99890 0.92338 1.21479 0.92875 0.94339 0.99463 1.21454 0.95706 1.02337 0.96843 1.17728 0.77758 1.02385 0.94113 1.91527 1.30642 1.92064 1.97308 1.22078 0.96738 1.12616 0.91071 1.96770 1.75939 1.97128 1.25663 1.21165 0.90682 0.96070 1.00295 0.91416 0.86596 0.86686 0.74235 0.92662 0.91933 0.87042 0.87982 0.81356 0.81761 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.97 21.65 0.30 -54.92 16 2 C 0.04 2.57 5.50 84.86 0.47 3.04 16 3 Si 0.91 44.57 27.74 68.60 1.90 46.47 16 4 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 7 C -0.53 -30.07 10.04 67.95 0.68 -29.39 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 9 S -0.18 -8.91 18.55 -56.49 -1.05 -9.96 16 10 C -0.11 -3.89 6.16 71.24 0.44 -3.46 16 11 C 0.53 16.77 7.85 87.66 0.69 17.46 16 12 O -0.57 -23.09 15.86 -3.02 -0.05 -23.14 16 13 N -0.71 -13.43 5.56 -463.07 -2.57 -16.00 16 14 C 0.12 1.96 5.66 86.38 0.49 2.44 16 15 C -0.08 -0.57 5.46 29.85 0.16 -0.41 16 16 C -0.08 -0.82 5.13 -19.86 -0.10 -0.93 16 17 C -0.06 -0.54 9.70 22.27 0.22 -0.32 16 18 C -0.14 -1.58 10.03 22.31 0.22 -1.35 16 19 C 0.10 1.62 7.27 22.39 0.16 1.79 16 20 F -0.14 -2.56 16.73 44.97 0.75 -1.81 16 21 C -0.14 -2.33 6.23 22.35 0.14 -2.19 16 22 Br -0.04 -0.69 33.28 -20.37 -0.68 -1.36 16 23 C -0.06 -0.79 9.44 22.28 0.21 -0.58 16 24 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 26 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 27 H 0.42 4.81 8.47 -92.71 -0.79 4.03 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 0.36 8.08 -2.39 -0.02 0.34 16 31 H 0.10 0.49 8.09 -2.39 -0.02 0.47 16 32 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -75.38 338.82 2.71 -72.67 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 0.32 Total: 1.95 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 3.78 Total: -13.89 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -2.27 Total: -70.93 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.75 Total: -1.81 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.68 Total: -1.36 kcal Total: -75.38 2.71 -72.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055865812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.236 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds