Wall clock time and date at job start Tue Mar 31 2020 05:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47410 * 2 1 4 4 C 1.53010 * 109.46927 * 240.00218 * 2 1 3 5 5 C 1.50700 * 109.47094 * 120.00292 * 2 1 3 6 6 C 1.38239 * 119.99958 * 60.00422 * 5 2 1 7 7 C 1.38239 * 119.99547 * 180.27529 * 6 5 2 8 8 C 1.38229 * 120.00284 * 359.48593 * 7 6 5 9 9 S 1.76196 * 120.00202 * 180.23667 * 8 7 6 10 10 O 1.42102 * 106.40267 * 21.33071 * 9 8 7 11 11 O 1.42103 * 106.40501 * 154.25326 * 9 8 7 12 12 N 1.65603 * 107.21711 * 267.79369 * 9 8 7 13 13 C 1.36851 * 120.00258 * 261.17494 * 12 9 8 14 14 H 1.07996 * 120.00496 * 167.46438 * 13 12 9 15 15 C 1.38796 * 119.99618 * 347.46231 * 13 12 9 16 16 N 1.31597 * 120.00149 * 71.31111 * 15 13 12 17 17 Si 1.86801 * 119.99904 * 251.31377 * 15 13 12 18 18 H 1.48498 * 109.47419 * 60.00111 * 17 15 13 19 19 H 1.48500 * 109.47133 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46985 * 299.99901 * 17 15 13 21 21 C 1.39304 * 120.00088 * 81.17537 * 12 9 8 22 22 C 1.39080 * 120.08877 * 336.81885 * 21 12 9 23 23 C 1.38044 * 119.91029 * 179.79086 * 22 21 12 24 24 C 1.38331 * 120.08666 * 0.48396 * 23 22 21 25 25 C 1.38326 * 120.18431 * 359.74632 * 24 23 22 26 26 C 1.38053 * 120.08668 * 0.02562 * 25 24 23 27 27 C 1.38238 * 119.99566 * 0.50924 * 8 7 6 28 28 C 1.38231 * 119.99886 * 240.01607 * 5 2 1 29 29 H 1.09004 * 109.46838 * 299.99451 * 1 2 3 30 30 H 1.09000 * 109.47249 * 59.99570 * 1 2 3 31 31 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47471 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47265 * 300.00420 * 3 2 1 34 34 H 1.09006 * 109.46662 * 59.99902 * 3 2 1 35 35 H 1.08997 * 109.46990 * 299.99736 * 4 2 1 36 36 H 1.09000 * 109.46983 * 60.00049 * 4 2 1 37 37 H 1.09002 * 109.46974 * 180.02562 * 4 2 1 38 38 H 1.08003 * 119.99883 * 359.97438 * 6 5 2 39 39 H 1.08003 * 119.99165 * 179.72260 * 7 6 5 40 40 H 0.97001 * 119.99832 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.04327 * 359.97438 * 22 21 12 42 42 H 1.07998 * 119.95543 * 180.22789 * 23 22 21 43 43 H 1.07999 * 119.90904 * 179.72121 * 24 23 22 44 44 H 1.07994 * 119.96093 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.04679 * 179.97438 * 26 25 24 46 46 H 1.08006 * 119.99511 * 179.71989 * 27 8 7 47 47 H 1.07998 * 119.99864 * 0.02562 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0323 -0.7105 1.2304 6 6 1.6984 -2.0340 1.4491 7 6 2.1546 -2.6840 2.5806 8 6 2.9533 -2.0137 3.4881 9 16 3.5398 -2.8440 4.9272 10 8 3.4741 -4.2347 4.6429 11 8 4.7390 -2.1848 5.3102 12 7 2.4443 -2.5618 6.1367 13 6 2.6848 -1.5840 7.0634 14 1 1.8945 -1.2600 7.7242 15 6 3.9447 -1.0087 7.1540 16 7 4.3674 -0.1979 6.2076 17 14 5.0402 -1.3853 8.6195 18 1 5.3076 -2.8450 8.6755 19 1 6.3236 -0.6515 8.4796 20 1 4.3600 -0.9583 9.8686 21 6 1.2778 -3.3198 6.2107 22 6 0.7819 -3.9491 5.0739 23 6 -0.3719 -4.7028 5.1524 24 6 -1.0402 -4.8244 6.3574 25 6 -0.5529 -4.1962 7.4894 26 6 0.6029 -3.4444 7.4203 27 6 3.2872 -0.6902 3.2694 28 6 2.8268 -0.0386 2.1405 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 1.0772 -2.5587 0.7383 39 1 1.8900 -3.7167 2.7536 40 1 5.2478 0.2044 6.2712 41 1 1.3004 -3.8506 4.1316 42 1 -0.7557 -5.1948 4.2709 43 1 -1.9451 -5.4111 6.4146 44 1 -1.0773 -4.2939 8.4284 45 1 0.9826 -2.9539 8.3044 46 1 3.9075 -0.1651 3.9807 47 1 3.0871 0.9956 1.9700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058137367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:19 Heat of formation + Delta-G solvation = 14.219638 kcal Electronic energy + Delta-G solvation = -31181.039429 eV Core-core repulsion = 27229.210144 eV Total energy + Delta-G solvation = -3951.829285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.43781 -38.67415 -36.19825 -36.03120 -35.17897 -34.24900 -32.51573 -30.72819 -30.17612 -29.51008 -28.54388 -27.31707 -27.26591 -25.03852 -22.88385 -22.30938 -21.65965 -21.09655 -19.23918 -18.80521 -17.79407 -17.31051 -16.40939 -15.67455 -15.31749 -15.04192 -14.86723 -14.64714 -14.25739 -14.24515 -13.77098 -13.61656 -13.52992 -13.17417 -12.95428 -12.92636 -12.64749 -12.52669 -12.45643 -12.29092 -11.90670 -11.87567 -11.70011 -11.60589 -11.57918 -11.16064 -10.94865 -10.89002 -10.68542 -10.61548 -10.53037 -10.46334 -10.39328 -10.23680 -10.18855 -9.84572 -9.42796 -8.40628 -8.33698 -8.18441 -8.07939 -7.64254 -7.21357 -3.91273 1.46848 1.82155 1.97667 2.19435 2.33832 3.03146 3.20817 3.31021 3.75205 4.07173 4.22236 4.40339 4.66222 4.67584 4.80060 5.01196 5.26249 5.31025 5.39226 5.45355 5.54242 5.57869 5.58549 5.62463 5.73865 5.73985 5.80545 5.83979 5.86118 5.98862 6.04119 6.05772 6.11325 6.19677 6.21811 6.29404 6.38606 6.40230 6.42674 6.64695 6.75148 6.84031 6.84452 7.00921 7.07712 7.09270 7.19433 7.30011 7.41646 7.57871 7.78395 7.85385 8.47440 8.82927 9.62323 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004714 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.221597 B = 5938.599460 C = 7690.791126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.047 4.047 6 C -0.148 4.148 7 C -0.046 4.046 8 C -0.654 4.654 9 S 2.466 3.534 10 O -1.000 7.000 11 O -0.961 6.961 12 N -0.714 5.714 13 C -0.330 4.330 14 H 0.124 0.876 15 C 0.118 3.882 16 N -0.662 5.662 17 Si 0.890 3.110 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.266 1.266 21 C 0.195 3.805 22 C -0.199 4.199 23 C -0.084 4.084 24 C -0.189 4.189 25 C -0.093 4.093 26 C -0.159 4.159 27 C -0.015 4.015 28 C -0.154 4.154 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.298 0.702 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.130 0.870 46 H 0.156 0.844 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 2.782 -6.449 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 C -0.200 4.200 4 C -0.194 4.194 5 C -0.047 4.047 6 C -0.167 4.167 7 C -0.064 4.064 8 C -0.732 4.732 9 S 2.580 3.420 10 O -0.991 6.991 11 O -0.950 6.950 12 N -0.512 5.512 13 C -0.483 4.483 14 H 0.141 0.859 15 C -0.117 4.117 16 N -0.283 5.283 17 Si 0.710 3.290 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.191 1.191 21 C 0.090 3.910 22 C -0.222 4.222 23 C -0.103 4.103 24 C -0.210 4.210 25 C -0.112 4.112 26 C -0.183 4.183 27 C -0.033 4.033 28 C -0.172 4.172 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.110 0.890 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.174 0.826 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.012 2.421 -7.015 8.955 hybrid contribution 0.230 0.363 -0.260 0.502 sum -4.782 2.784 -7.276 9.141 Atomic orbital electron populations 1.21876 0.93780 1.02093 1.01675 1.19534 0.95683 0.95056 0.92937 1.21951 1.01275 0.95042 1.01729 1.21879 1.01258 1.00235 0.96063 1.19849 0.96054 0.93900 0.94900 1.20904 1.02578 0.94709 0.98468 1.20957 0.93860 0.98928 0.92689 1.32312 1.11237 1.07498 1.22114 1.14313 0.80163 0.74867 0.72636 1.93348 1.88151 1.32977 1.84640 1.93430 1.47459 1.74314 1.79818 1.53588 1.31454 1.37260 1.28877 1.19416 0.97103 1.23261 1.08516 0.85888 1.25316 0.96144 0.91970 0.98275 1.70081 1.18481 1.09077 1.30687 0.86588 0.79114 0.81210 0.82059 1.18633 1.20325 1.19098 1.17693 0.86150 0.93076 0.94054 1.21321 0.98941 1.04120 0.97822 1.20651 0.94715 0.97608 0.97322 1.20726 1.01621 1.05145 0.93539 1.20836 0.95827 0.96845 0.97651 1.20885 0.96871 1.03646 0.96931 1.21429 0.94103 0.92603 0.95208 1.21299 1.00246 1.00014 0.95657 0.92380 0.92598 0.92397 0.92258 0.92672 0.92101 0.92422 0.92560 0.92556 0.86688 0.85285 0.89005 0.85526 0.87084 0.87473 0.86982 0.85222 0.82610 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.29 37.16 0.31 -1.27 16 2 C -0.03 -0.41 0.85 -155.66 -0.13 -0.54 16 3 C -0.14 -1.63 7.13 37.16 0.26 -1.36 16 4 C -0.14 -1.55 8.29 37.16 0.31 -1.24 16 5 C -0.05 -0.77 4.76 -104.62 -0.50 -1.27 16 6 C -0.15 -2.59 8.71 -39.58 -0.34 -2.93 16 7 C -0.05 -0.94 8.24 -39.58 -0.33 -1.26 16 8 C -0.65 -14.89 5.85 -39.58 -0.23 -15.12 16 9 S 2.47 62.29 4.98 -107.50 -0.54 61.75 16 10 O -1.00 -26.92 15.12 -57.17 -0.86 -27.78 16 11 O -0.96 -25.56 11.92 -57.17 -0.68 -26.24 16 12 N -0.71 -17.24 3.12 -9.60 -0.03 -17.27 16 13 C -0.33 -7.74 8.75 -15.11 -0.13 -7.87 16 14 H 0.12 2.69 6.92 -52.49 -0.36 2.33 16 15 C 0.12 2.75 3.13 -17.45 -0.05 2.70 16 16 N -0.66 -15.38 9.47 55.49 0.53 -14.85 16 17 Si 0.89 18.57 29.53 -169.99 -5.02 13.55 16 18 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 C 0.19 4.38 6.11 -83.84 -0.51 3.87 16 22 C -0.20 -4.25 8.54 -39.34 -0.34 -4.59 16 23 C -0.08 -1.53 10.04 -39.62 -0.40 -1.93 16 24 C -0.19 -3.15 10.04 -39.51 -0.40 -3.55 16 25 C -0.09 -1.58 10.04 -39.62 -0.40 -1.97 16 26 C -0.16 -3.15 9.18 -39.34 -0.36 -3.52 16 27 C -0.01 -0.32 9.52 -39.58 -0.38 -0.69 16 28 C -0.15 -2.80 8.98 -39.59 -0.36 -3.15 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.66 7.39 -51.93 -0.38 0.28 16 32 H 0.06 0.68 7.52 -51.93 -0.39 0.29 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 35 H 0.06 0.65 7.39 -51.93 -0.38 0.26 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.12 1.69 7.10 -52.48 -0.37 1.31 16 39 H 0.13 2.59 5.55 -52.48 -0.29 2.30 16 40 H 0.30 6.44 8.31 -40.82 -0.34 6.10 16 41 H 0.13 2.74 2.16 -52.49 -0.11 2.63 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.13 2.41 6.78 -52.49 -0.36 2.05 16 46 H 0.16 3.49 5.68 -52.48 -0.30 3.19 16 47 H 0.12 1.90 5.90 -52.49 -0.31 1.59 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -28.31 374.98 -11.10 -39.40 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.17 Total: 11.49 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: -3.97 Total: -45.71 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.50 Total: -32.12 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -1.55 Total: -54.02 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 16 Polarization: 62.29 SS G_CDS: -0.54 Total: 61.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.31 -11.10 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058137367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.624 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds