Wall clock time and date at job start Tue Mar 31 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47410 * 2 1 4 4 C 1.53010 * 109.46927 * 240.00218 * 2 1 3 5 5 C 1.50700 * 109.47094 * 120.00292 * 2 1 3 6 6 C 1.38239 * 119.99958 * 60.00422 * 5 2 1 7 7 C 1.38239 * 119.99547 * 180.27529 * 6 5 2 8 8 C 1.38229 * 120.00284 * 359.48593 * 7 6 5 9 9 S 1.76196 * 120.00202 * 180.23667 * 8 7 6 10 10 O 1.42102 * 106.40267 * 21.33071 * 9 8 7 11 11 O 1.42103 * 106.40501 * 154.25326 * 9 8 7 12 12 N 1.65603 * 107.21711 * 267.79369 * 9 8 7 13 13 C 1.36851 * 120.00258 * 261.17494 * 12 9 8 14 14 H 1.07996 * 120.00496 * 167.46438 * 13 12 9 15 15 C 1.38796 * 119.99618 * 347.46231 * 13 12 9 16 16 N 1.31597 * 120.00149 * 71.31111 * 15 13 12 17 17 Si 1.86801 * 119.99904 * 251.31377 * 15 13 12 18 18 H 1.48498 * 109.47419 * 60.00111 * 17 15 13 19 19 H 1.48500 * 109.47133 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46985 * 299.99901 * 17 15 13 21 21 C 1.39304 * 120.00088 * 81.17537 * 12 9 8 22 22 C 1.39080 * 120.08877 * 336.81885 * 21 12 9 23 23 C 1.38044 * 119.91029 * 179.79086 * 22 21 12 24 24 C 1.38331 * 120.08666 * 0.48396 * 23 22 21 25 25 C 1.38326 * 120.18431 * 359.74632 * 24 23 22 26 26 C 1.38053 * 120.08668 * 0.02562 * 25 24 23 27 27 C 1.38238 * 119.99566 * 0.50924 * 8 7 6 28 28 C 1.38231 * 119.99886 * 240.01607 * 5 2 1 29 29 H 1.09004 * 109.46838 * 299.99451 * 1 2 3 30 30 H 1.09000 * 109.47249 * 59.99570 * 1 2 3 31 31 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47471 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47265 * 300.00420 * 3 2 1 34 34 H 1.09006 * 109.46662 * 59.99902 * 3 2 1 35 35 H 1.08997 * 109.46990 * 299.99736 * 4 2 1 36 36 H 1.09000 * 109.46983 * 60.00049 * 4 2 1 37 37 H 1.09002 * 109.46974 * 180.02562 * 4 2 1 38 38 H 1.08003 * 119.99883 * 359.97438 * 6 5 2 39 39 H 1.08003 * 119.99165 * 179.72260 * 7 6 5 40 40 H 0.97001 * 119.99832 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.04327 * 359.97438 * 22 21 12 42 42 H 1.07998 * 119.95543 * 180.22789 * 23 22 21 43 43 H 1.07999 * 119.90904 * 179.72121 * 24 23 22 44 44 H 1.07994 * 119.96093 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.04679 * 179.97438 * 26 25 24 46 46 H 1.08006 * 119.99511 * 179.71989 * 27 8 7 47 47 H 1.07998 * 119.99864 * 0.02562 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0323 -0.7105 1.2304 6 6 1.6984 -2.0340 1.4491 7 6 2.1546 -2.6840 2.5806 8 6 2.9533 -2.0137 3.4881 9 16 3.5398 -2.8440 4.9272 10 8 3.4741 -4.2347 4.6429 11 8 4.7390 -2.1848 5.3102 12 7 2.4443 -2.5618 6.1367 13 6 2.6848 -1.5840 7.0634 14 1 1.8945 -1.2600 7.7242 15 6 3.9447 -1.0087 7.1540 16 7 4.3674 -0.1979 6.2076 17 14 5.0402 -1.3853 8.6195 18 1 5.3076 -2.8450 8.6755 19 1 6.3236 -0.6515 8.4796 20 1 4.3600 -0.9583 9.8686 21 6 1.2778 -3.3198 6.2107 22 6 0.7819 -3.9491 5.0739 23 6 -0.3719 -4.7028 5.1524 24 6 -1.0402 -4.8244 6.3574 25 6 -0.5529 -4.1962 7.4894 26 6 0.6029 -3.4444 7.4203 27 6 3.2872 -0.6902 3.2694 28 6 2.8268 -0.0386 2.1405 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 1.0772 -2.5587 0.7383 39 1 1.8900 -3.7167 2.7536 40 1 5.2478 0.2044 6.2712 41 1 1.3004 -3.8506 4.1316 42 1 -0.7557 -5.1948 4.2709 43 1 -1.9451 -5.4111 6.4146 44 1 -1.0773 -4.2939 8.4284 45 1 0.9826 -2.9539 8.3044 46 1 3.9075 -0.1651 3.9807 47 1 3.0871 0.9956 1.9700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058137367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:16 Heat of formation + Delta-G solvation = 0.456475 kcal Electronic energy + Delta-G solvation = -31181.636245 eV Core-core repulsion = 27229.210144 eV Total energy + Delta-G solvation = -3952.426101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.75358 -40.19126 -37.99772 -37.23348 -36.84522 -36.09156 -34.27489 -32.18472 -31.61876 -30.89239 -30.10845 -28.27900 -28.14159 -26.75704 -24.24824 -23.78477 -23.12776 -22.62467 -20.77569 -20.15585 -19.41544 -18.89502 -18.10788 -17.22358 -16.81188 -16.54057 -16.38740 -16.22315 -15.67540 -15.34767 -15.21068 -15.16071 -14.85724 -14.68673 -14.50060 -14.34674 -14.04094 -13.94181 -13.80307 -13.69010 -13.33666 -13.28715 -12.99624 -12.85373 -12.59900 -12.59265 -12.45963 -12.32714 -12.18684 -12.10327 -12.01014 -11.91167 -11.87426 -11.82217 -11.50777 -11.34432 -11.01722 -9.90531 -9.87146 -9.82257 -9.63236 -9.34444 -8.84617 -5.70945 -0.10842 0.20707 0.46550 0.72243 0.83229 1.34038 1.52650 1.60528 2.00032 2.47377 2.53286 2.79946 3.13563 3.50098 3.59074 3.71209 3.93504 3.99421 4.06691 4.14585 4.22932 4.31790 4.34687 4.42806 4.53986 4.61480 4.66511 4.75210 4.78413 4.81618 4.85265 4.91414 4.95137 4.98150 5.00941 5.02041 5.09441 5.16498 5.21116 5.31107 5.34496 5.40243 5.43561 5.47905 5.55345 5.63957 5.71052 5.82996 5.86613 6.04905 6.10903 6.33717 6.67387 7.09281 7.85912 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004714 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.221597 B = 5938.599460 C = 7690.791126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.039 4.039 6 C -0.144 4.144 7 C -0.064 4.064 8 C -0.676 4.676 9 S 2.421 3.579 10 O -1.038 7.038 11 O -0.995 6.995 12 N -0.718 5.718 13 C -0.310 4.310 14 H 0.137 0.863 15 C 0.083 3.917 16 N -0.673 5.673 17 Si 0.938 3.062 18 H -0.287 1.287 19 H -0.272 1.272 20 H -0.230 1.230 21 C 0.154 3.846 22 C -0.225 4.225 23 C -0.092 4.092 24 C -0.173 4.173 25 C -0.088 4.088 26 C -0.170 4.170 27 C -0.043 4.043 28 C -0.156 4.156 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.303 0.697 41 H 0.116 0.884 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 3.392 -6.473 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 C -0.200 4.200 4 C -0.193 4.193 5 C -0.040 4.040 6 C -0.163 4.163 7 C -0.083 4.083 8 C -0.755 4.755 9 S 2.541 3.459 10 O -1.029 7.029 11 O -0.985 6.985 12 N -0.515 5.515 13 C -0.470 4.470 14 H 0.154 0.846 15 C -0.152 4.152 16 N -0.294 5.294 17 Si 0.757 3.243 18 H -0.213 1.213 19 H -0.197 1.197 20 H -0.153 1.153 21 C 0.053 3.947 22 C -0.248 4.248 23 C -0.111 4.111 24 C -0.193 4.193 25 C -0.106 4.106 26 C -0.194 4.194 27 C -0.062 4.062 28 C -0.175 4.175 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.163 0.837 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.168 0.832 44 H 0.172 0.828 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.032 2.983 -7.066 11.106 hybrid contribution 0.994 0.215 -0.186 1.034 sum -7.038 3.198 -7.252 10.600 Atomic orbital electron populations 1.21879 0.92463 1.02430 1.02491 1.19657 0.96631 0.95494 0.91373 1.21963 1.01078 0.94253 1.02754 1.21886 1.00737 1.00466 0.96224 1.20339 0.94295 0.93570 0.95758 1.21252 1.02033 0.95278 0.97699 1.21040 0.94599 0.98918 0.93705 1.32157 1.12628 1.08090 1.22623 1.17079 0.80990 0.74448 0.73376 1.93228 1.88717 1.35604 1.85387 1.93314 1.50087 1.74430 1.80628 1.54202 1.32718 1.37472 1.27132 1.20059 0.97509 1.23090 1.06292 0.84610 1.26036 0.97046 0.91943 1.00214 1.70041 1.18907 1.09461 1.31005 0.85868 0.78320 0.79291 0.80828 1.21316 1.19675 1.15321 1.18198 0.86537 0.94342 0.95658 1.21566 1.00332 1.05315 0.97587 1.21076 0.93659 0.96901 0.99424 1.21269 1.02083 1.03594 0.92375 1.21323 0.94585 0.95103 0.99629 1.21182 0.97733 1.04341 0.96154 1.21415 0.95446 0.92717 0.96589 1.21580 1.00038 1.01023 0.94834 0.93464 0.89901 0.92352 0.92680 0.90074 0.92686 0.92386 0.89875 0.93465 0.83669 0.85996 0.88511 0.86627 0.84385 0.83234 0.82845 0.84552 0.84397 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.29 71.98 0.60 -2.15 16 2 C -0.03 -0.73 0.85 -52.93 -0.05 -0.78 16 3 C -0.14 -2.94 7.13 71.98 0.51 -2.43 16 4 C -0.14 -2.72 8.29 71.99 0.60 -2.13 16 5 C -0.04 -1.29 4.76 -19.87 -0.09 -1.38 16 6 C -0.14 -5.08 8.71 22.27 0.19 -4.89 16 7 C -0.06 -2.78 8.24 22.27 0.18 -2.60 16 8 C -0.68 -33.08 5.85 22.27 0.13 -32.95 16 9 S 2.42 131.69 4.98 -56.49 -0.28 131.41 16 10 O -1.04 -60.66 15.12 -128.00 -1.94 -62.60 16 11 O -0.99 -56.99 11.92 -128.00 -1.53 -58.52 16 12 N -0.72 -36.32 3.12 -184.29 -0.57 -36.89 16 13 C -0.31 -14.88 8.75 84.04 0.74 -14.14 16 14 H 0.14 5.94 6.92 -2.91 -0.02 5.92 16 15 C 0.08 3.93 3.13 84.86 0.27 4.19 16 16 N -0.67 -32.56 9.47 21.65 0.20 -32.36 16 17 Si 0.94 38.29 29.53 68.60 2.03 40.31 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.23 -8.06 7.11 99.48 0.71 -7.35 16 21 C 0.15 7.13 6.11 38.36 0.23 7.36 16 22 C -0.22 -9.88 8.54 22.43 0.19 -9.69 16 23 C -0.09 -3.21 10.04 22.25 0.22 -2.99 16 24 C -0.17 -5.12 10.04 22.31 0.22 -4.90 16 25 C -0.09 -2.70 10.04 22.25 0.22 -2.48 16 26 C -0.17 -6.58 9.18 22.43 0.21 -6.37 16 27 C -0.04 -1.96 9.52 22.27 0.21 -1.75 16 28 C -0.16 -5.85 8.98 22.27 0.20 -5.65 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.17 7.39 -2.38 -0.02 1.15 16 32 H 0.05 1.17 7.52 -2.39 -0.02 1.15 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.19 7.51 -2.38 -0.02 1.17 16 35 H 0.06 1.15 7.39 -2.39 -0.02 1.14 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.15 4.09 7.10 -2.91 -0.02 4.07 16 39 H 0.12 5.32 5.55 -2.91 -0.02 5.31 16 40 H 0.30 13.65 8.31 -92.71 -0.77 12.88 16 41 H 0.12 5.33 2.16 -2.91 -0.01 5.33 16 42 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 43 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 45 H 0.14 4.92 6.78 -2.91 -0.02 4.90 16 46 H 0.14 6.70 5.68 -2.91 -0.02 6.68 16 47 H 0.14 4.54 5.90 -2.91 -0.02 4.52 16 Total: -1.00 -67.19 374.98 3.70 -63.49 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: 0.99 Total: 40.86 kcal Atomic # 6 Polarization: -90.49 SS G_CDS: 4.79 Total: -85.70 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -0.37 Total: -69.25 kcal Atomic # 8 Polarization: -117.65 SS G_CDS: -3.46 Total: -121.12 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 16 Polarization: 131.69 SS G_CDS: -0.28 Total: 131.41 kcal Total: -67.19 3.70 -63.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058137367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.947 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds