Wall clock time and date at job start Tue Mar 31 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99396 * 2 1 4 4 O 1.21577 * 120.00423 * 0.02562 * 3 2 1 5 5 C 1.47657 * 119.99527 * 179.72229 * 3 2 1 6 6 C 1.41514 * 126.44131 * 179.97438 * 5 3 2 7 7 C 1.35374 * 105.55682 * 180.02562 * 6 5 3 8 8 N 1.35847 * 107.12810 * 0.02562 * 7 6 5 9 9 C 1.40154 * 124.95671 * 180.02562 * 8 7 6 10 10 C 1.38888 * 119.99849 * 359.72245 * 9 8 7 11 11 C 1.38006 * 120.00258 * 179.72517 * 10 9 8 12 12 C 1.38911 * 119.99512 * 0.55052 * 11 10 9 13 13 N 1.39960 * 120.00056 * 179.74853 * 12 11 10 14 14 C 1.34780 * 119.99876 * 213.33389 * 13 12 11 15 15 O 1.21291 * 120.00134 * 5.26797 * 14 13 12 16 16 C 1.50706 * 119.99962 * 185.27484 * 14 13 12 17 17 S 1.80995 * 109.47047 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00243 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99594 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00289 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00090 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99915 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47554 * 89.99760 * 22 20 18 24 24 H 1.48499 * 109.47253 * 209.99820 * 22 20 18 25 25 H 1.48504 * 109.47191 * 329.99836 * 22 20 18 26 26 C 1.38903 * 119.99431 * 359.72484 * 12 11 10 27 27 C 1.38007 * 120.00012 * 0.02562 * 26 12 11 28 28 N 1.28481 * 110.08308 * 359.72299 * 8 7 6 29 29 H 1.08998 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47293 * 299.99820 * 1 2 3 31 31 H 1.09000 * 109.46878 * 60.00559 * 1 2 3 32 32 H 0.96997 * 120.00381 * 179.97438 * 2 1 3 33 33 H 1.07997 * 127.22636 * 0.02920 * 6 5 3 34 34 H 1.07994 * 126.43422 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.99868 * 0.02562 * 10 9 8 36 36 H 1.07996 * 120.00723 * 180.28116 * 11 10 9 37 37 H 0.97001 * 120.00668 * 33.32786 * 13 12 11 38 38 H 1.09000 * 109.46993 * 299.99449 * 16 14 13 39 39 H 1.08997 * 109.46912 * 59.99721 * 16 14 13 40 40 H 0.96989 * 119.99927 * 180.02562 * 21 20 18 41 41 H 1.07997 * 119.99914 * 179.97438 * 26 12 11 42 42 H 1.08003 * 119.99545 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5309 2.2201 0.0005 5 6 3.6154 1.1673 0.0062 6 6 4.4559 2.3058 0.0065 7 6 5.7207 1.8232 0.0126 8 7 5.6318 0.4677 0.0152 9 6 6.7254 -0.4089 0.0220 10 6 8.0195 0.0954 0.0208 11 6 9.0964 -0.7676 0.0332 12 6 8.8860 -2.1407 0.0354 13 7 9.9781 -3.0159 0.0427 14 6 9.8971 -4.1998 -0.5964 15 8 8.9155 -4.4665 -1.2572 16 6 11.0262 -5.1924 -0.4900 17 16 10.6213 -6.6719 -1.4507 18 6 12.0686 -7.6331 -1.1569 19 1 12.8598 -7.2414 -0.5349 20 6 12.1918 -8.8935 -1.7248 21 7 13.2732 -9.6113 -1.5057 22 14 10.8235 -9.5707 -2.8011 23 1 11.0670 -9.1830 -4.2138 24 1 10.7949 -11.0514 -2.6922 25 1 9.5208 -9.0161 -2.3532 26 6 7.5917 -2.6449 0.0308 27 6 6.5149 -1.7817 0.0236 28 7 4.3988 0.1065 0.0169 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.9501 -0.8400 0.0004 33 1 4.1522 3.3421 0.0026 34 1 6.6297 2.4064 0.0142 35 1 8.1830 1.1630 0.0150 36 1 10.1027 -0.3755 0.0369 37 1 10.7933 -2.7706 0.5075 38 1 11.9409 -4.7452 -0.8791 39 1 11.1716 -5.4665 0.5549 40 1 13.3594 -10.4920 -1.9028 41 1 7.4281 -3.7124 0.0320 42 1 5.5086 -2.1738 0.0204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058168293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:04 Heat of formation + Delta-G solvation = 48.358587 kcal Electronic energy + Delta-G solvation = -27138.616941 eV Core-core repulsion = 23019.301777 eV Total energy + Delta-G solvation = -4119.315164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.26330 -40.64912 -39.67347 -38.63971 -35.29400 -34.96908 -33.13208 -32.53672 -31.95071 -30.85829 -30.29932 -28.56344 -27.13649 -25.72144 -24.26375 -23.92536 -22.15641 -21.72887 -20.49016 -20.40245 -19.01452 -18.27474 -17.75471 -17.60280 -16.75529 -16.56824 -16.15737 -15.71772 -15.33608 -15.13864 -15.06284 -14.84678 -14.51221 -14.34996 -13.97492 -13.90944 -13.72879 -13.43626 -13.30255 -13.14289 -13.01906 -12.88371 -12.66278 -12.37370 -11.81013 -11.37563 -11.30523 -11.09760 -10.97614 -10.75381 -10.58634 -10.00154 -9.88809 -9.78549 -9.65804 -9.50527 -9.39079 -9.09892 -8.65201 -8.13050 -7.05375 -6.38265 -4.12085 0.33254 0.92507 1.39158 1.84364 1.95433 2.50466 2.60191 2.84886 3.06078 3.07590 3.25718 3.41500 3.41915 3.47582 3.87716 4.23493 4.26510 4.35494 4.47978 4.49895 4.65427 4.83506 4.88550 4.96227 5.00760 5.04141 5.12293 5.22025 5.23407 5.32004 5.40534 5.49012 5.54385 5.56632 5.80700 5.81101 5.92067 5.95534 6.03182 6.09805 6.41568 6.66568 7.03939 7.16703 7.48272 7.82765 7.84435 8.06533 8.31817 9.07307 10.70799 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.001673 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.614946 B =16732.715732 C =18152.095797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.723 5.723 3 C 0.607 3.393 4 O -0.532 6.532 5 C -0.017 4.017 6 C -0.170 4.170 7 C -0.017 4.017 8 N -0.220 5.220 9 C 0.100 3.900 10 C -0.101 4.101 11 C -0.129 4.129 12 C 0.168 3.832 13 N -0.679 5.679 14 C 0.531 3.469 15 O -0.494 6.494 16 C -0.126 4.126 17 S -0.137 6.137 18 C -0.525 4.525 19 H 0.089 0.911 20 C 0.097 3.903 21 N -0.877 5.877 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.236 1.236 26 C -0.104 4.104 27 C -0.081 4.081 28 N -0.257 5.257 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.410 0.590 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.414 0.586 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.272 0.728 41 H 0.150 0.850 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.007 23.212 6.307 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.375 5.375 3 C 0.391 3.609 4 O -0.407 6.407 5 C -0.177 4.177 6 C -0.198 4.198 7 C -0.157 4.157 8 N -0.002 5.002 9 C 0.009 3.991 10 C -0.122 4.122 11 C -0.150 4.150 12 C 0.072 3.928 13 N -0.325 5.325 14 C 0.319 3.681 15 O -0.366 6.366 16 C -0.276 4.276 17 S 0.089 5.911 18 C -0.672 4.672 19 H 0.107 0.893 20 C -0.112 4.112 21 N -0.514 5.514 22 Si 0.681 3.319 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.160 1.160 26 C -0.125 4.125 27 C -0.101 4.101 28 N -0.092 5.092 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.244 0.756 33 H 0.185 0.815 34 H 0.204 0.796 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.251 0.749 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.168 0.832 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.941 22.062 5.180 28.295 hybrid contribution 1.601 0.390 0.470 1.714 sum -15.340 22.453 5.650 27.773 Atomic orbital electron populations 1.21598 0.78890 1.02623 1.02527 1.45654 1.07974 1.08788 1.75076 1.16845 0.84091 0.83932 0.76000 1.90803 1.68448 1.31277 1.50166 1.21938 0.94216 0.90722 1.10851 1.21788 0.90477 1.00171 1.07325 1.23051 1.00763 0.83528 1.08309 1.42686 1.03431 1.05019 1.49061 1.17604 0.84041 0.89122 1.08289 1.20544 0.89389 1.00420 1.01802 1.20714 0.99357 0.90940 1.03989 1.17918 0.87892 0.89316 0.97698 1.43718 1.16129 1.18037 1.54650 1.20582 0.88778 0.81122 0.77657 1.90735 1.32484 1.75816 1.37580 1.23297 0.99044 0.99017 1.06269 1.84835 1.29545 1.11423 1.65290 1.22277 1.03251 1.04054 1.37617 0.89256 1.24706 0.95708 0.95506 0.95293 1.69927 1.26554 1.11724 1.43145 0.86746 0.84030 0.79338 0.81792 1.19149 1.19821 1.15955 1.21191 0.90029 1.01640 0.99599 1.20810 1.00566 0.89999 0.98770 1.73484 0.89603 1.27041 1.19054 0.90297 0.91955 0.91933 0.75554 0.81490 0.79622 0.84545 0.84216 0.74946 0.87982 0.87810 0.91821 0.83213 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.72 -6.02 5.71 -68.10 -0.39 -6.41 16 3 C 0.61 6.81 7.82 -12.42 -0.10 6.71 16 4 O -0.53 -7.37 16.92 5.30 0.09 -7.28 16 5 C -0.02 -0.19 7.13 -82.75 -0.59 -0.78 16 6 C -0.17 -1.56 10.80 -39.36 -0.42 -1.99 16 7 C -0.02 -0.13 10.78 -16.80 -0.18 -0.31 16 8 N -0.22 -2.19 3.52 -10.53 -0.04 -2.23 16 9 C 0.10 0.97 6.66 -83.57 -0.56 0.42 16 10 C -0.10 -0.75 9.42 -39.43 -0.37 -1.13 16 11 C -0.13 -1.00 9.95 -39.42 -0.39 -1.39 16 12 C 0.17 1.77 6.28 -83.65 -0.53 1.25 16 13 N -0.68 -7.25 5.34 -9.83 -0.05 -7.30 16 14 C 0.53 8.13 7.58 -10.98 -0.08 8.05 16 15 O -0.49 -9.31 13.55 5.55 0.08 -9.24 16 16 C -0.13 -2.14 6.16 36.01 0.22 -1.92 16 17 S -0.14 -3.24 18.55 -107.50 -1.99 -5.23 16 18 C -0.52 -14.38 10.04 30.94 0.31 -14.07 16 19 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 20 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 21 N -0.88 -25.62 13.97 55.49 0.78 -24.85 16 22 Si 0.86 20.96 27.74 -169.99 -4.71 16.25 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 26 C -0.10 -1.23 8.65 -39.42 -0.34 -1.57 16 27 C -0.08 -0.87 9.59 -39.43 -0.38 -1.25 16 28 N -0.26 -2.81 10.84 33.42 0.36 -2.45 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.41 2.85 8.55 -40.82 -0.35 2.51 16 33 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.19 0.74 6.95 -52.49 -0.36 0.37 16 35 H 0.14 0.61 6.64 -52.48 -0.35 0.26 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.41 2.95 8.82 -40.82 -0.36 2.59 16 38 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 39 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 41 H 0.15 2.03 6.41 -52.49 -0.34 1.69 16 42 H 0.14 1.46 7.64 -52.48 -0.40 1.05 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -35.98 382.32 -7.68 -43.66 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.70 Total: 3.47 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.86 Total: -4.17 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.66 Total: -43.23 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.16 Total: -16.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.25 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -1.99 Total: -5.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.98 -7.68 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058168293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.021 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds