Wall clock time and date at job start Tue Mar 31 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99396 * 2 1 4 4 O 1.21577 * 120.00423 * 0.02562 * 3 2 1 5 5 C 1.47657 * 119.99527 * 179.72229 * 3 2 1 6 6 C 1.41514 * 126.44131 * 179.97438 * 5 3 2 7 7 C 1.35374 * 105.55682 * 180.02562 * 6 5 3 8 8 N 1.35847 * 107.12810 * 0.02562 * 7 6 5 9 9 C 1.40154 * 124.95671 * 180.02562 * 8 7 6 10 10 C 1.38888 * 119.99849 * 359.72245 * 9 8 7 11 11 C 1.38006 * 120.00258 * 179.72517 * 10 9 8 12 12 C 1.38911 * 119.99512 * 0.55052 * 11 10 9 13 13 N 1.39960 * 120.00056 * 179.74853 * 12 11 10 14 14 C 1.34780 * 119.99876 * 213.33389 * 13 12 11 15 15 O 1.21291 * 120.00134 * 5.26797 * 14 13 12 16 16 C 1.50706 * 119.99962 * 185.27484 * 14 13 12 17 17 S 1.80995 * 109.47047 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00243 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99594 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00289 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00090 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99915 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47554 * 89.99760 * 22 20 18 24 24 H 1.48499 * 109.47253 * 209.99820 * 22 20 18 25 25 H 1.48504 * 109.47191 * 329.99836 * 22 20 18 26 26 C 1.38903 * 119.99431 * 359.72484 * 12 11 10 27 27 C 1.38007 * 120.00012 * 0.02562 * 26 12 11 28 28 N 1.28481 * 110.08308 * 359.72299 * 8 7 6 29 29 H 1.08998 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47293 * 299.99820 * 1 2 3 31 31 H 1.09000 * 109.46878 * 60.00559 * 1 2 3 32 32 H 0.96997 * 120.00381 * 179.97438 * 2 1 3 33 33 H 1.07997 * 127.22636 * 0.02920 * 6 5 3 34 34 H 1.07994 * 126.43422 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.99868 * 0.02562 * 10 9 8 36 36 H 1.07996 * 120.00723 * 180.28116 * 11 10 9 37 37 H 0.97001 * 120.00668 * 33.32786 * 13 12 11 38 38 H 1.09000 * 109.46993 * 299.99449 * 16 14 13 39 39 H 1.08997 * 109.46912 * 59.99721 * 16 14 13 40 40 H 0.96989 * 119.99927 * 180.02562 * 21 20 18 41 41 H 1.07997 * 119.99914 * 179.97438 * 26 12 11 42 42 H 1.08003 * 119.99545 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5309 2.2201 0.0005 5 6 3.6154 1.1673 0.0062 6 6 4.4559 2.3058 0.0065 7 6 5.7207 1.8232 0.0126 8 7 5.6318 0.4677 0.0152 9 6 6.7254 -0.4089 0.0220 10 6 8.0195 0.0954 0.0208 11 6 9.0964 -0.7676 0.0332 12 6 8.8860 -2.1407 0.0354 13 7 9.9781 -3.0159 0.0427 14 6 9.8971 -4.1998 -0.5964 15 8 8.9155 -4.4665 -1.2572 16 6 11.0262 -5.1924 -0.4900 17 16 10.6213 -6.6719 -1.4507 18 6 12.0686 -7.6331 -1.1569 19 1 12.8598 -7.2414 -0.5349 20 6 12.1918 -8.8935 -1.7248 21 7 13.2732 -9.6113 -1.5057 22 14 10.8235 -9.5707 -2.8011 23 1 11.0670 -9.1830 -4.2138 24 1 10.7949 -11.0514 -2.6922 25 1 9.5208 -9.0161 -2.3532 26 6 7.5917 -2.6449 0.0308 27 6 6.5149 -1.7817 0.0236 28 7 4.3988 0.1065 0.0169 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.9501 -0.8400 0.0004 33 1 4.1522 3.3421 0.0026 34 1 6.6297 2.4064 0.0142 35 1 8.1830 1.1630 0.0150 36 1 10.1027 -0.3755 0.0369 37 1 10.7933 -2.7706 0.5075 38 1 11.9409 -4.7452 -0.8791 39 1 11.1716 -5.4665 0.5549 40 1 13.3594 -10.4920 -1.9028 41 1 7.4281 -3.7124 0.0320 42 1 5.5086 -2.1738 0.0204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058168293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:03 Heat of formation + Delta-G solvation = 22.235925 kcal Electronic energy + Delta-G solvation = -27139.749704 eV Core-core repulsion = 23019.301777 eV Total energy + Delta-G solvation = -4120.447927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.96758 -41.61888 -40.51230 -39.56305 -36.25964 -35.72671 -34.67553 -33.97762 -32.64056 -31.54702 -31.45364 -29.46002 -27.94051 -27.74218 -25.03673 -24.65870 -22.91759 -22.57266 -21.44864 -21.15965 -19.97213 -19.65959 -18.74532 -18.45833 -18.02450 -17.30727 -17.11256 -16.91584 -16.79133 -16.09177 -16.08331 -15.87711 -15.60258 -15.25381 -15.04271 -14.85472 -14.78844 -14.63238 -14.22288 -13.98687 -13.90069 -13.77191 -13.58173 -13.34826 -13.13901 -13.02904 -12.69119 -12.54695 -12.05524 -11.90037 -11.80713 -11.45915 -11.17770 -11.12988 -10.64519 -10.55087 -10.32735 -10.21894 -10.12947 -9.03042 -8.90445 -8.51973 -6.22897 -0.42334 0.23132 0.58917 0.94905 1.13483 1.26557 1.30970 1.44859 1.50506 1.53452 2.05841 2.18543 2.23806 2.25968 2.67051 2.68136 2.86693 3.17484 3.60702 3.70949 3.74998 3.89191 4.00541 4.15679 4.20688 4.32373 4.39840 4.44575 4.48939 4.58532 4.59371 4.67670 4.78641 4.90530 4.91853 5.09752 5.17213 5.26148 5.28239 5.34454 5.64528 5.70358 5.95512 6.11879 6.27644 6.31809 6.76375 6.93424 6.99973 7.05368 8.60138 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.001673 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.614946 B =16732.715732 C =18152.095797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.715 5.715 3 C 0.600 3.400 4 O -0.567 6.567 5 C -0.035 4.035 6 C -0.186 4.186 7 C -0.001 4.001 8 N -0.228 5.228 9 C 0.095 3.905 10 C -0.088 4.088 11 C -0.109 4.109 12 C 0.147 3.853 13 N -0.655 5.655 14 C 0.537 3.463 15 O -0.536 6.536 16 C -0.111 4.111 17 S -0.174 6.174 18 C -0.528 4.528 19 H 0.066 0.934 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.261 1.261 25 H -0.236 1.236 26 C -0.122 4.122 27 C -0.094 4.094 28 N -0.278 5.278 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.416 0.584 33 H 0.179 0.821 34 H 0.232 0.768 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.434 0.566 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.276 0.724 41 H 0.122 0.878 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 25.838 6.567 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.366 5.366 3 C 0.385 3.615 4 O -0.445 6.445 5 C -0.195 4.195 6 C -0.213 4.213 7 C -0.140 4.140 8 N -0.010 5.010 9 C 0.004 3.996 10 C -0.108 4.108 11 C -0.130 4.130 12 C 0.052 3.948 13 N -0.302 5.302 14 C 0.324 3.676 15 O -0.412 6.412 16 C -0.262 4.262 17 S 0.052 5.948 18 C -0.676 4.676 19 H 0.084 0.916 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.188 1.188 24 H -0.186 1.186 25 H -0.160 1.160 26 C -0.143 4.143 27 C -0.115 4.115 28 N -0.113 5.113 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.252 0.748 33 H 0.196 0.804 34 H 0.248 0.752 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.274 0.726 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.140 0.860 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.402 24.694 5.475 30.147 hybrid contribution 1.423 -0.253 0.492 1.527 sum -14.979 24.441 5.967 29.281 Atomic orbital electron populations 1.21782 0.77572 1.04559 1.02121 1.45719 1.08947 1.08349 1.73577 1.17061 0.84523 0.84126 0.75772 1.90770 1.69135 1.32416 1.52186 1.22095 0.94242 0.91666 1.11491 1.22089 0.90946 1.00412 1.07883 1.23730 1.01872 0.82599 1.05810 1.42836 1.03100 1.05940 1.49154 1.17829 0.85051 0.88645 1.08072 1.21016 0.87825 1.02502 0.99474 1.21093 1.01319 0.89209 1.01367 1.18087 0.86917 0.90513 0.99287 1.43306 1.17073 1.16403 1.53443 1.20178 0.87472 0.82097 0.77813 1.90736 1.33723 1.76905 1.39822 1.23263 1.00619 0.96375 1.05948 1.84770 1.27990 1.14794 1.67236 1.22452 1.03978 1.04596 1.36550 0.91622 1.25530 0.97721 0.96028 0.96618 1.70008 1.28326 1.12414 1.44606 0.85903 0.81389 0.79191 0.80117 1.18805 1.18587 1.15986 1.21014 0.91416 1.00533 1.01350 1.20734 0.99994 0.90947 0.99790 1.73451 0.90344 1.27437 1.20040 0.87220 0.92282 0.92390 0.74833 0.80394 0.75187 0.80363 0.80398 0.72611 0.85947 0.86071 0.91408 0.86000 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.70 127.77 1.37 2.36 16 2 N -0.72 -11.97 5.71 -487.65 -2.78 -14.76 16 3 C 0.60 13.69 7.82 86.73 0.68 14.37 16 4 O -0.57 -16.08 16.92 -3.96 -0.07 -16.15 16 5 C -0.04 -0.75 7.13 42.43 0.30 -0.45 16 6 C -0.19 -3.11 10.80 22.42 0.24 -2.87 16 7 C 0.00 -0.01 10.78 83.41 0.90 0.89 16 8 N -0.23 -4.06 3.52 -187.22 -0.66 -4.72 16 9 C 0.09 1.61 6.66 38.12 0.25 1.86 16 10 C -0.09 -0.89 9.42 22.37 0.21 -0.68 16 11 C -0.11 -1.19 9.95 22.38 0.22 -0.96 16 12 C 0.15 2.76 6.28 38.16 0.24 3.00 16 13 N -0.65 -12.32 5.34 -303.41 -1.62 -13.94 16 14 C 0.54 15.79 7.58 87.66 0.66 16.46 16 15 O -0.54 -20.29 13.55 -3.06 -0.04 -20.33 16 16 C -0.11 -3.64 6.16 71.24 0.44 -3.20 16 17 S -0.17 -8.22 18.55 -56.49 -1.05 -9.27 16 18 C -0.53 -29.30 10.04 67.95 0.68 -28.62 16 19 H 0.07 3.82 8.03 -2.91 -0.02 3.80 16 20 C 0.05 2.65 5.50 84.86 0.47 3.11 16 21 N -0.92 -54.23 13.97 21.65 0.30 -53.93 16 22 Si 0.91 43.60 27.74 68.60 1.90 45.50 16 23 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.24 -11.21 6.74 99.48 0.67 -10.54 16 26 C -0.12 -2.87 8.65 22.37 0.19 -2.68 16 27 C -0.09 -2.00 9.59 22.37 0.21 -1.78 16 28 N -0.28 -5.93 10.84 -48.17 -0.52 -6.45 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.42 5.85 8.55 -92.71 -0.79 5.05 16 33 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.23 0.47 6.95 -2.91 -0.02 0.45 16 35 H 0.18 0.33 6.64 -2.91 -0.02 0.31 16 36 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 37 H 0.43 4.56 8.82 -92.71 -0.82 3.74 16 38 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.12 3.56 8.14 -2.40 -0.02 3.54 16 40 H 0.28 15.19 8.31 -92.72 -0.77 14.42 16 41 H 0.12 3.52 6.41 -2.91 -0.02 3.50 16 42 H 0.13 2.92 7.64 -2.91 -0.02 2.90 16 Total: -1.00 -82.21 382.32 2.00 -80.21 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.54 Total: 13.03 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 7.08 Total: 0.80 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -5.28 Total: -93.79 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.11 Total: -36.48 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.90 Total: 45.50 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.05 Total: -9.27 kcal Total: -82.21 2.00 -80.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058168293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.450 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds