Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00193 * 2 1 4 4 C 1.50703 * 109.46953 * 275.61033 * 3 2 1 5 5 H 1.08003 * 119.99714 * 4.72733 * 4 3 2 6 6 C 1.37876 * 119.99974 * 184.72882 * 4 3 2 7 7 N 1.31518 * 119.99830 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99916 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47242 * 60.00397 * 8 6 4 10 10 H 1.48500 * 109.47029 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47318 * 300.00035 * 8 6 4 12 12 S 1.65608 * 119.99645 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.39803 * 159.66701 * 12 2 1 14 14 O 1.42095 * 106.40431 * 26.74727 * 12 2 1 15 15 N 1.65598 * 107.21737 * 273.20618 * 12 2 1 16 16 C 1.46499 * 120.00043 * 62.85482 * 15 12 2 17 17 C 1.53001 * 109.47093 * 164.54323 * 16 15 12 18 18 C 1.52997 * 109.47307 * 300.00573 * 17 16 15 19 19 C 1.53003 * 109.46961 * 60.00105 * 17 16 15 20 20 C 1.50697 * 109.47082 * 180.02562 * 17 16 15 21 21 C 1.38262 * 119.99515 * 359.72437 * 20 17 16 22 22 C 1.38224 * 120.02513 * 179.76623 * 21 20 17 23 23 C 1.38228 * 120.01256 * 0.51220 * 22 21 20 24 24 C 1.38328 * 119.99122 * 359.74159 * 23 22 21 25 25 Cl 1.73598 * 120.01810 * 180.02562 * 24 23 22 26 26 C 1.38196 * 119.99293 * 180.02562 * 20 17 16 27 27 H 1.08995 * 109.47683 * 270.00444 * 1 2 3 28 28 H 1.09006 * 109.46573 * 30.00684 * 1 2 3 29 29 H 1.09002 * 109.47148 * 150.00059 * 1 2 3 30 30 H 1.08995 * 109.46963 * 35.60826 * 3 2 1 31 31 H 1.08997 * 109.47094 * 155.60945 * 3 2 1 32 32 H 0.96996 * 119.99979 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99794 * 242.85320 * 15 12 2 34 34 H 1.08995 * 109.47403 * 284.54503 * 16 15 12 35 35 H 1.09004 * 109.46963 * 44.54443 * 16 15 12 36 36 H 1.08997 * 109.47584 * 59.99719 * 18 17 16 37 37 H 1.09003 * 109.47347 * 180.02562 * 18 17 16 38 38 H 1.09004 * 109.46739 * 299.99873 * 18 17 16 39 39 H 1.09005 * 109.47007 * 60.00243 * 19 17 16 40 40 H 1.09001 * 109.47035 * 179.97438 * 19 17 16 41 41 H 1.08992 * 109.47399 * 300.00186 * 19 17 16 42 42 H 1.07999 * 119.98655 * 0.02562 * 21 20 17 43 43 H 1.07995 * 119.99035 * 180.25819 * 22 21 20 44 44 H 1.08002 * 120.00466 * 179.76921 * 23 22 21 45 45 H 1.08001 * 120.00602 * 359.95797 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3284 1.7731 -1.4141 5 1 1.8431 1.2463 -2.2224 6 6 3.0677 2.9071 -1.6758 7 7 3.6591 3.5483 -0.6915 8 14 3.2305 3.5320 -3.4286 9 1 1.8839 3.8493 -3.9681 10 1 4.0695 4.7572 -3.4414 11 1 3.8670 2.4867 -4.2697 12 16 2.2930 -1.4343 0.0006 13 8 3.6006 -1.1428 -0.4732 14 8 1.4394 -2.3906 -0.6124 15 7 2.4614 -1.9023 1.5802 16 6 1.2750 -2.1988 2.3868 17 6 1.6919 -2.9610 3.6462 18 6 2.3773 -4.2694 3.2470 19 6 2.6627 -2.1052 4.4623 20 6 0.4714 -3.2666 4.4756 21 6 -0.7767 -2.8547 4.0465 22 6 -1.8972 -3.1388 4.8044 23 6 -1.7692 -3.8256 5.9971 24 6 -0.5201 -4.2334 6.4296 25 17 -0.3587 -5.0965 7.9271 26 6 0.6007 -3.9528 5.6681 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6557 2.0011 0.5983 31 1 3.1897 1.1153 0.4244 32 1 4.1789 4.3463 -0.8755 33 1 3.3456 -1.9802 1.9712 34 1 0.7868 -1.2667 2.6712 35 1 0.5834 -2.8085 1.8053 36 1 3.2600 -4.0488 2.6468 37 1 2.6740 -4.8127 4.1442 38 1 1.6857 -4.8791 2.6655 39 1 2.1745 -1.1731 4.7468 40 1 2.9595 -2.6481 5.3597 41 1 3.5454 -1.8846 3.8622 42 1 -0.8767 -2.3145 3.1167 43 1 -2.8723 -2.8206 4.4666 44 1 -2.6443 -4.0443 6.5910 45 1 1.5762 -4.2708 6.0053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058191664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = -65.982062 kcal Electronic energy + Delta-G solvation = -28426.727588 eV Core-core repulsion = 24403.561736 eV Total energy + Delta-G solvation = -4023.165853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 360.106 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.35056 -37.64737 -36.63232 -36.47775 -35.50397 -35.16313 -33.27461 -32.43978 -31.13300 -29.99691 -27.79051 -27.46145 -26.33831 -25.08178 -23.24902 -22.59022 -22.29366 -19.63293 -19.13194 -17.63538 -17.05143 -16.72719 -16.53643 -16.04613 -15.61613 -15.41746 -14.90027 -14.82448 -14.40371 -14.30602 -13.95960 -13.84306 -13.61952 -13.38466 -13.29228 -12.78091 -12.36388 -12.32483 -12.19190 -12.09227 -12.02885 -11.75579 -11.65646 -11.57311 -11.48340 -11.43201 -11.24941 -11.17218 -11.06222 -10.86959 -10.76478 -10.71997 -10.49912 -10.05261 -9.79193 -9.36205 -9.17799 -8.97699 -8.44733 -8.08477 -6.07131 -4.11368 0.84818 0.94820 1.22089 1.80815 3.30191 3.33003 3.36792 3.40969 3.49542 4.09439 4.25282 4.31723 4.44137 4.60971 4.71584 4.73786 4.89491 4.91989 5.04425 5.09225 5.27911 5.34351 5.37676 5.43152 5.48939 5.52856 5.60746 5.66874 5.69743 5.75865 5.85038 5.90078 5.95597 6.00629 6.09516 6.12500 6.23499 6.27789 6.47475 6.54030 7.06977 7.25499 7.40071 7.61278 7.90197 8.19700 8.90839 9.54001 11.01474 Molecular weight = 360.11amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002311 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.976885 B =12114.177344 C =12307.602406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.782 3.218 13 O -0.963 6.963 14 O -0.998 6.998 15 N -1.133 6.133 16 C 0.128 3.872 17 C -0.031 4.031 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.052 4.052 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.033 4.033 25 Cl -0.075 7.075 26 C -0.104 4.104 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.411 0.589 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 -15.112 16.510 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.789 3.211 13 O -0.947 6.947 14 O -0.981 6.981 15 N -0.893 5.893 16 C 0.001 3.999 17 C -0.032 4.032 18 C -0.198 4.198 19 C -0.199 4.199 20 C -0.053 4.053 21 C -0.135 4.135 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.059 4.059 25 Cl -0.047 7.047 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.868 -15.473 15.836 23.850 hybrid contribution 0.329 0.605 -0.207 0.719 sum -8.539 -14.869 15.629 23.200 Atomic orbital electron populations 1.21381 0.80383 1.03573 1.00021 1.57591 1.14169 1.23322 1.88707 1.19057 0.91213 0.78607 0.97594 1.21457 1.31854 1.10346 0.93441 0.92227 1.24933 0.95009 0.96544 0.97484 1.69906 1.33114 1.18965 1.31397 0.86577 0.78133 0.78171 0.84686 1.20175 1.21160 1.19994 1.01940 0.73398 0.72925 0.72807 1.93646 1.38624 1.84561 1.77891 1.93522 1.69059 1.61157 1.74387 1.56306 1.13843 1.85768 1.33340 1.21370 0.87447 0.99266 0.91769 1.19686 0.93100 0.96669 0.93740 1.21911 1.00956 0.95328 1.01611 1.21923 0.98788 0.99677 0.99502 1.19689 0.94533 0.96831 0.94220 1.21380 0.91841 0.99672 1.00565 1.21142 0.99221 0.97699 0.93888 1.21055 0.95935 0.99355 0.97284 1.20891 0.95250 1.00235 0.89533 1.98372 1.98191 1.75561 1.32536 1.20835 0.97871 0.99398 0.94173 0.94427 0.90362 0.91612 0.95035 0.93948 0.92617 0.75416 0.91370 0.90268 0.91494 0.92231 0.91954 0.91776 0.92126 0.91511 0.84657 0.84863 0.85114 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 10.69 59.85 0.64 2.14 16 2 N -1.00 -19.79 3.23 -123.05 -0.40 -20.19 16 3 C 0.26 6.31 5.10 -5.19 -0.03 6.28 16 4 C -0.53 -14.76 9.38 -34.44 -0.32 -15.09 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 S 2.78 52.90 6.09 -107.50 -0.65 52.24 16 13 O -0.96 -22.58 16.99 -57.17 -0.97 -23.55 16 14 O -1.00 -20.03 16.34 -57.17 -0.93 -20.96 16 15 N -1.13 -15.48 5.38 -10.61 -0.06 -15.53 16 16 C 0.13 1.43 3.81 -4.04 -0.02 1.41 16 17 C -0.03 -0.28 0.62 -155.66 -0.10 -0.38 16 18 C -0.14 -1.26 8.12 37.16 0.30 -0.96 16 19 C -0.14 -1.24 8.12 37.16 0.30 -0.94 16 20 C -0.05 -0.46 4.76 -104.63 -0.50 -0.96 16 21 C -0.12 -1.00 8.98 -39.58 -0.36 -1.36 16 22 C -0.10 -0.77 10.05 -39.59 -0.40 -1.17 16 23 C -0.12 -0.93 9.83 -39.55 -0.39 -1.32 16 24 C -0.03 -0.28 6.32 -39.50 -0.25 -0.53 16 25 Cl -0.08 -0.63 28.96 -51.86 -1.50 -2.14 16 26 C -0.10 -0.90 8.50 -39.55 -0.34 -1.24 16 27 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 28 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 29 H 0.07 1.00 7.05 -51.93 -0.37 0.63 16 30 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.04 1.11 7.50 -51.93 -0.39 0.73 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.41 4.98 6.49 -34.47 -0.22 4.76 16 34 H 0.07 0.71 7.40 -51.93 -0.38 0.33 16 35 H 0.08 0.88 7.18 -51.93 -0.37 0.51 16 36 H 0.07 0.61 7.21 -51.93 -0.37 0.23 16 37 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 41 H 0.07 0.59 6.60 -51.93 -0.34 0.25 16 42 H 0.14 1.06 5.89 -52.49 -0.31 0.75 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.13 1.01 7.10 -52.49 -0.37 0.64 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -33.67 390.76 -10.85 -44.51 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.40 Total: 0.70 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.54 Total: -12.45 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.28 Total: -60.96 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.91 Total: -44.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 52.90 SS G_CDS: -0.65 Total: 52.24 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.67 -10.85 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058191664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.467 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds