Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00193 * 2 1 4 4 C 1.50703 * 109.46953 * 275.61033 * 3 2 1 5 5 H 1.08003 * 119.99714 * 4.72733 * 4 3 2 6 6 C 1.37876 * 119.99974 * 184.72882 * 4 3 2 7 7 N 1.31518 * 119.99830 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99916 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47242 * 60.00397 * 8 6 4 10 10 H 1.48500 * 109.47029 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47318 * 300.00035 * 8 6 4 12 12 S 1.65608 * 119.99645 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.39803 * 159.66701 * 12 2 1 14 14 O 1.42095 * 106.40431 * 26.74727 * 12 2 1 15 15 N 1.65598 * 107.21737 * 273.20618 * 12 2 1 16 16 C 1.46499 * 120.00043 * 62.85482 * 15 12 2 17 17 C 1.53001 * 109.47093 * 164.54323 * 16 15 12 18 18 C 1.52997 * 109.47307 * 300.00573 * 17 16 15 19 19 C 1.53003 * 109.46961 * 60.00105 * 17 16 15 20 20 C 1.50697 * 109.47082 * 180.02562 * 17 16 15 21 21 C 1.38262 * 119.99515 * 359.72437 * 20 17 16 22 22 C 1.38224 * 120.02513 * 179.76623 * 21 20 17 23 23 C 1.38228 * 120.01256 * 0.51220 * 22 21 20 24 24 C 1.38328 * 119.99122 * 359.74159 * 23 22 21 25 25 Cl 1.73598 * 120.01810 * 180.02562 * 24 23 22 26 26 C 1.38196 * 119.99293 * 180.02562 * 20 17 16 27 27 H 1.08995 * 109.47683 * 270.00444 * 1 2 3 28 28 H 1.09006 * 109.46573 * 30.00684 * 1 2 3 29 29 H 1.09002 * 109.47148 * 150.00059 * 1 2 3 30 30 H 1.08995 * 109.46963 * 35.60826 * 3 2 1 31 31 H 1.08997 * 109.47094 * 155.60945 * 3 2 1 32 32 H 0.96996 * 119.99979 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99794 * 242.85320 * 15 12 2 34 34 H 1.08995 * 109.47403 * 284.54503 * 16 15 12 35 35 H 1.09004 * 109.46963 * 44.54443 * 16 15 12 36 36 H 1.08997 * 109.47584 * 59.99719 * 18 17 16 37 37 H 1.09003 * 109.47347 * 180.02562 * 18 17 16 38 38 H 1.09004 * 109.46739 * 299.99873 * 18 17 16 39 39 H 1.09005 * 109.47007 * 60.00243 * 19 17 16 40 40 H 1.09001 * 109.47035 * 179.97438 * 19 17 16 41 41 H 1.08992 * 109.47399 * 300.00186 * 19 17 16 42 42 H 1.07999 * 119.98655 * 0.02562 * 21 20 17 43 43 H 1.07995 * 119.99035 * 180.25819 * 22 21 20 44 44 H 1.08002 * 120.00466 * 179.76921 * 23 22 21 45 45 H 1.08001 * 120.00602 * 359.95797 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3284 1.7731 -1.4141 5 1 1.8431 1.2463 -2.2224 6 6 3.0677 2.9071 -1.6758 7 7 3.6591 3.5483 -0.6915 8 14 3.2305 3.5320 -3.4286 9 1 1.8839 3.8493 -3.9681 10 1 4.0695 4.7572 -3.4414 11 1 3.8670 2.4867 -4.2697 12 16 2.2930 -1.4343 0.0006 13 8 3.6006 -1.1428 -0.4732 14 8 1.4394 -2.3906 -0.6124 15 7 2.4614 -1.9023 1.5802 16 6 1.2750 -2.1988 2.3868 17 6 1.6919 -2.9610 3.6462 18 6 2.3773 -4.2694 3.2470 19 6 2.6627 -2.1052 4.4623 20 6 0.4714 -3.2666 4.4756 21 6 -0.7767 -2.8547 4.0465 22 6 -1.8972 -3.1388 4.8044 23 6 -1.7692 -3.8256 5.9971 24 6 -0.5201 -4.2334 6.4296 25 17 -0.3587 -5.0965 7.9271 26 6 0.6007 -3.9528 5.6681 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6557 2.0011 0.5983 31 1 3.1897 1.1153 0.4244 32 1 4.1789 4.3463 -0.8755 33 1 3.3456 -1.9802 1.9712 34 1 0.7868 -1.2667 2.6712 35 1 0.5834 -2.8085 1.8053 36 1 3.2600 -4.0488 2.6468 37 1 2.6740 -4.8127 4.1442 38 1 1.6857 -4.8791 2.6655 39 1 2.1745 -1.1731 4.7468 40 1 2.9595 -2.6481 5.3597 41 1 3.5454 -1.8846 3.8622 42 1 -0.8767 -2.3145 3.1167 43 1 -2.8723 -2.8206 4.4666 44 1 -2.6443 -4.0443 6.5910 45 1 1.5762 -4.2708 6.0053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058191664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = -87.591478 kcal Electronic energy + Delta-G solvation = -28427.664643 eV Core-core repulsion = 24403.561736 eV Total energy + Delta-G solvation = -4024.102907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 360.106 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.02331 -38.46303 -38.15778 -37.21931 -37.16318 -36.81920 -34.50144 -34.23410 -31.76386 -30.66014 -29.63677 -28.16183 -27.25108 -26.72479 -24.18556 -23.92381 -23.23502 -20.49326 -20.37609 -19.03723 -18.45754 -18.29087 -17.79901 -17.35104 -16.80281 -16.28793 -16.22550 -15.78534 -15.61632 -15.25944 -15.02333 -14.86352 -14.56453 -14.47657 -14.36094 -14.05134 -13.89961 -13.51742 -13.31873 -13.12528 -13.09078 -13.01065 -12.93673 -12.91017 -12.83505 -12.59496 -12.46067 -12.40551 -12.33268 -12.13205 -11.98982 -11.92815 -11.76296 -11.59325 -11.50083 -10.59444 -10.46241 -9.80456 -9.75481 -9.61083 -8.19327 -6.31062 -0.28778 0.21804 0.34087 1.17857 1.39778 1.43210 1.50124 2.07448 2.41184 2.67531 2.68606 3.11934 3.42432 3.52570 3.66329 3.95136 4.00288 4.11462 4.16945 4.19615 4.28450 4.43922 4.50549 4.65429 4.71573 4.75613 4.76871 4.82400 4.86602 4.94755 4.96769 5.01607 5.11676 5.13824 5.23069 5.25347 5.33735 5.38607 5.43965 5.48230 5.59095 5.72235 5.87282 5.89756 6.10781 6.17498 6.77541 7.37834 8.87988 Molecular weight = 360.11amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002311 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.976885 B =12114.177344 C =12307.602406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.002 6.002 3 C 0.272 3.728 4 C -0.551 4.551 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.954 3.046 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.278 1.278 12 S 2.799 3.201 13 O -1.013 7.013 14 O -1.009 7.009 15 N -1.116 6.116 16 C 0.119 3.881 17 C -0.022 4.022 18 C -0.144 4.144 19 C -0.143 4.143 20 C -0.059 4.059 21 C -0.128 4.128 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.044 4.044 25 Cl -0.077 7.077 26 C -0.109 4.109 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.420 0.580 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.142 0.858 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 -15.604 17.129 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.843 5.843 3 C 0.148 3.852 4 C -0.590 4.590 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.204 1.204 12 S 2.807 3.193 13 O -0.997 6.997 14 O -0.992 6.992 15 N -0.881 5.881 16 C -0.007 4.007 17 C -0.024 4.024 18 C -0.201 4.201 19 C -0.200 4.200 20 C -0.060 4.060 21 C -0.146 4.146 22 C -0.119 4.119 23 C -0.140 4.140 24 C -0.070 4.070 25 Cl -0.048 7.048 26 C -0.128 4.128 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.257 0.743 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.160 0.840 43 H 0.173 0.827 44 H 0.163 0.837 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.202 -15.976 16.455 25.101 hybrid contribution 0.667 0.671 -0.308 0.995 sum -9.535 -15.305 16.147 24.205 Atomic orbital electron populations 1.21642 0.78099 1.03650 1.02665 1.57449 1.15720 1.21824 1.89355 1.18602 0.90581 0.80242 0.95741 1.21836 1.31798 1.10570 0.94827 0.92896 1.25742 0.94812 0.96889 1.01347 1.69998 1.33731 1.19415 1.33187 0.85668 0.78743 0.77650 0.80032 1.18729 1.20232 1.20363 1.01150 0.72005 0.72503 0.73611 1.93575 1.41158 1.85206 1.79762 1.93502 1.69080 1.61135 1.75484 1.55811 1.15396 1.84995 1.31864 1.21666 0.86365 1.00316 0.92305 1.19581 0.93498 0.96473 0.92799 1.21946 1.00620 0.95306 1.02207 1.21946 0.98483 0.99632 0.99985 1.19652 0.94470 0.97475 0.94400 1.21573 0.92042 0.99911 1.01068 1.21408 0.99961 0.97066 0.93501 1.21306 0.96199 0.98940 0.97540 1.21040 0.95713 1.00617 0.89676 1.98371 1.98215 1.75605 1.32583 1.20914 0.98311 0.99420 0.94120 0.90499 0.91224 0.90607 0.95378 0.96279 0.92402 0.74305 0.90246 0.89910 0.91921 0.90765 0.92461 0.92194 0.90778 0.91852 0.84014 0.82719 0.83675 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.59 10.69 127.77 1.37 3.96 16 2 N -1.00 -39.47 3.23 -543.23 -1.75 -41.22 16 3 C 0.27 13.51 5.10 85.63 0.44 13.94 16 4 C -0.55 -30.91 9.38 25.60 0.24 -30.67 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.66 5.46 84.65 0.46 1.12 16 7 N -0.92 -54.07 13.29 21.45 0.28 -53.78 16 8 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 S 2.80 105.99 6.09 -56.49 -0.34 105.65 16 13 O -1.01 -48.47 16.99 -128.00 -2.17 -50.64 16 14 O -1.01 -39.72 16.34 -128.00 -2.09 -41.81 16 15 N -1.12 -29.61 5.38 -187.49 -1.01 -30.61 16 16 C 0.12 2.46 3.81 86.38 0.33 2.79 16 17 C -0.02 -0.37 0.62 -52.93 -0.03 -0.40 16 18 C -0.14 -2.36 8.12 71.98 0.58 -1.77 16 19 C -0.14 -2.30 8.12 71.98 0.58 -1.72 16 20 C -0.06 -0.95 4.76 -19.87 -0.09 -1.05 16 21 C -0.13 -1.93 8.98 22.27 0.20 -1.73 16 22 C -0.10 -1.31 10.05 22.26 0.22 -1.08 16 23 C -0.12 -1.67 9.83 22.29 0.22 -1.45 16 24 C -0.04 -0.69 6.32 22.32 0.14 -0.55 16 25 Cl -0.08 -1.18 28.96 -2.72 -0.08 -1.26 16 26 C -0.11 -1.71 8.50 22.29 0.19 -1.52 16 27 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 28 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 29 H 0.08 2.17 7.05 -2.39 -0.02 2.15 16 30 H 0.03 1.40 8.11 -2.39 -0.02 1.38 16 31 H 0.02 1.03 7.50 -2.39 -0.02 1.02 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.42 9.94 6.49 -96.75 -0.63 9.32 16 34 H 0.08 1.48 7.40 -2.39 -0.02 1.47 16 35 H 0.08 1.68 7.18 -2.39 -0.02 1.66 16 36 H 0.06 1.07 7.21 -2.39 -0.02 1.05 16 37 H 0.07 0.99 7.39 -2.39 -0.02 0.97 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.07 0.99 7.39 -2.39 -0.02 0.97 16 41 H 0.06 1.05 6.60 -2.39 -0.02 1.04 16 42 H 0.14 1.87 5.89 -2.91 -0.02 1.85 16 43 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.89 7.10 -2.91 -0.02 1.87 16 Total: -1.00 -72.03 390.76 0.09 -71.94 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.38 Total: 15.39 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.85 Total: -20.13 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -2.48 Total: -125.62 kcal Atomic # 8 Polarization: -88.18 SS G_CDS: -4.27 Total: -92.45 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 105.99 SS G_CDS: -0.34 Total: 105.65 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -72.03 0.09 -71.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058191664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.656 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds