Wall clock time and date at job start Tue Mar 31 2020 05:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39758 * 125.83965 * 2 1 4 4 C 1.36107 * 107.83039 * 180.14786 * 3 2 1 5 5 N 1.39465 * 126.21882 * 179.84699 * 4 3 2 6 6 C 1.34777 * 119.99910 * 359.69161 * 5 4 3 7 7 O 1.21289 * 120.00288 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00195 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.46456 * 324.99399 * 8 6 5 10 10 C 1.52997 * 109.47238 * 84.99566 * 8 6 5 11 11 S 1.81396 * 109.47192 * 204.99971 * 8 6 5 12 12 C 1.81403 * 103.00044 * 174.99568 * 11 8 6 13 13 C 1.50699 * 109.46864 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99993 * 269.72781 * 13 12 11 15 15 C 1.38234 * 119.99969 * 179.77327 * 14 13 12 16 16 C 1.38236 * 119.99741 * 0.50106 * 15 14 13 17 17 C 1.38235 * 120.00124 * 359.75457 * 16 15 14 18 18 C 1.38229 * 120.00155 * 359.97438 * 17 16 15 19 19 N 1.35260 * 107.56402 * 359.58417 * 4 3 2 20 20 C 1.46496 * 126.04530 * 180.22751 * 19 4 3 21 21 C 1.50702 * 109.47479 * 90.00334 * 20 19 4 22 22 H 1.08005 * 119.99535 * 359.97438 * 21 20 19 23 23 C 1.37870 * 120.00392 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00278 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00162 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47116 * 90.00160 * 25 23 21 27 27 H 1.48504 * 109.47673 * 210.00088 * 25 23 21 28 28 H 1.48498 * 109.47078 * 330.00456 * 25 23 21 29 29 N 1.30849 * 125.83676 * 179.68391 * 2 1 3 30 30 H 1.08996 * 109.47059 * 270.29915 * 1 2 3 31 31 H 1.09004 * 109.46639 * 30.29770 * 1 2 3 32 32 H 1.08998 * 109.46798 * 150.29372 * 1 2 3 33 33 H 1.07997 * 126.08291 * 359.97438 * 3 2 1 34 34 H 0.96998 * 120.00694 * 179.68859 * 5 4 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 10 8 6 36 36 H 1.09001 * 109.46832 * 60.00314 * 10 8 6 37 37 H 1.09004 * 109.47261 * 300.00295 * 10 8 6 38 38 H 1.08994 * 109.47187 * 299.99909 * 12 11 8 39 39 H 1.09005 * 109.46789 * 59.99769 * 12 11 8 40 40 H 1.08002 * 120.00328 * 359.97438 * 14 13 12 41 41 H 1.08007 * 120.00037 * 180.22829 * 15 14 13 42 42 H 1.08002 * 119.99831 * 179.72510 * 16 15 14 43 43 H 1.08000 * 119.99759 * 179.97438 * 17 16 15 44 44 H 1.07995 * 120.00317 * 179.97438 * 18 17 16 45 45 H 1.09005 * 109.47205 * 209.99811 * 20 19 4 46 46 H 1.08999 * 109.47289 * 329.99774 * 20 19 4 47 47 H 0.96997 * 120.00446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6198 0.7122 -0.0033 5 7 4.7513 1.5274 -0.0075 6 6 4.6157 2.8683 -0.0147 7 8 3.5097 3.3661 -0.0182 8 6 5.8384 3.7494 -0.0198 9 1 6.6253 3.2820 0.5721 10 6 6.3255 3.9376 -1.4579 11 16 5.4230 5.3643 0.6943 12 6 7.0255 6.2131 0.7436 13 6 6.8454 7.5930 1.3218 14 6 6.5720 8.6614 0.4882 15 6 6.4021 9.9264 1.0191 16 6 6.5159 10.1248 2.3824 17 6 6.7945 9.0574 3.2153 18 6 6.9588 7.7914 2.6851 19 7 3.6093 -0.6404 0.0040 20 6 4.7871 -1.5115 0.0083 21 6 5.1915 -1.8027 1.4305 22 1 4.6277 -1.3806 2.2494 23 6 6.2810 -2.6078 1.6865 24 7 6.9672 -3.1222 0.6894 25 14 6.7826 -2.9681 3.4494 26 1 6.0824 -4.1888 3.9237 27 1 8.2506 -3.1836 3.5123 28 1 6.4136 -1.8184 4.3138 29 7 2.2732 -1.0608 0.0059 30 1 -0.3633 0.0054 1.0276 31 1 -0.3633 0.8874 -0.5185 32 1 -0.3633 -0.8926 -0.5093 33 1 1.9903 2.1596 -0.0004 34 1 5.6359 1.1295 -0.0051 35 1 7.2101 4.5745 -1.4615 36 1 5.5384 4.4050 -2.0498 37 1 6.5751 2.9672 -1.8870 38 1 7.7181 5.6458 1.3653 39 1 7.4259 6.2923 -0.2672 40 1 6.4879 8.5072 -0.5774 41 1 6.1849 10.7605 0.3682 42 1 6.3876 11.1139 2.7966 43 1 6.8838 9.2125 4.2804 44 1 7.1769 6.9575 3.3358 45 1 4.5497 -2.4460 -0.5004 46 1 5.6082 -1.0149 -0.5086 47 1 7.7339 -3.6884 0.8694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058193779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:32 Heat of formation + Delta-G solvation = 61.276003 kcal Electronic energy + Delta-G solvation = -28223.784392 eV Core-core repulsion = 24306.288375 eV Total energy + Delta-G solvation = -3917.496017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.90955 -39.49618 -39.26492 -34.79787 -33.83012 -33.51506 -33.01675 -32.05560 -31.19506 -29.17462 -28.25786 -27.32571 -26.06219 -24.96137 -22.91959 -22.87916 -21.93514 -21.34109 -19.80539 -19.30775 -17.43237 -16.96920 -16.81390 -16.65383 -16.15867 -15.58973 -15.54138 -15.36525 -14.95864 -14.57858 -14.53717 -14.13352 -14.00545 -13.76022 -13.48107 -13.24816 -13.01644 -12.90670 -12.79664 -12.69612 -12.51589 -12.18653 -12.02634 -12.00420 -11.77622 -11.59183 -11.43999 -11.32774 -11.10060 -10.91842 -10.42411 -10.36346 -10.11151 -9.95103 -9.83904 -9.53192 -9.21688 -8.96543 -8.75168 -7.94463 -7.80398 -7.46906 -6.36538 -4.45049 0.66178 1.11469 1.52251 2.17376 2.33854 2.80369 3.06196 3.14558 3.21638 3.26237 3.56044 3.57530 3.74522 4.21637 4.29904 4.42726 4.46413 4.60242 4.70733 4.79234 4.82597 4.85302 4.96856 5.11954 5.21203 5.28388 5.32094 5.35153 5.41100 5.62504 5.66318 5.73785 5.80487 6.04193 6.14369 6.14612 6.15664 6.21388 6.23641 6.25619 6.39051 6.64074 6.67721 6.80419 7.01422 7.47316 7.54307 7.58962 7.76463 7.85823 8.22296 8.59240 8.68376 9.22758 10.70537 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.002394 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.926848 B =11691.037796 C =13383.621516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.540 3.460 7 O -0.494 6.494 8 C -0.095 4.095 9 H 0.112 0.888 10 C -0.143 4.143 11 S -0.165 6.165 12 C -0.068 4.068 13 C -0.070 4.070 14 C -0.101 4.101 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.101 4.101 19 N -0.344 5.344 20 C 0.256 3.744 21 C -0.540 4.540 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.276 1.276 27 H -0.283 1.283 28 H -0.272 1.272 29 N -0.284 5.284 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 22.892 -1.610 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.325 4.325 4 C 0.079 3.921 5 N -0.281 5.281 6 C 0.324 3.676 7 O -0.366 6.366 8 C -0.227 4.227 9 H 0.130 0.870 10 C -0.202 4.202 11 S 0.065 5.935 12 C -0.215 4.215 13 C -0.072 4.072 14 C -0.120 4.120 15 C -0.139 4.139 16 C -0.136 4.136 17 C -0.139 4.139 18 C -0.121 4.121 19 N -0.129 5.129 20 C 0.139 3.861 21 C -0.579 4.579 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.196 1.196 29 N -0.109 5.109 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.253 0.747 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.446 22.110 -1.351 22.198 hybrid contribution 2.320 -0.327 0.634 2.427 sum 3.766 21.783 -0.717 22.118 Atomic orbital electron populations 1.20023 0.87534 1.02345 1.02193 1.22035 0.96545 0.90997 1.01793 1.21272 0.89053 1.00501 1.21697 1.17874 0.87839 0.83346 1.03064 1.42626 1.08438 1.05154 1.71892 1.19504 0.90025 0.81273 0.76774 1.90681 1.25962 1.73398 1.46581 1.23281 0.99804 0.97267 1.02352 0.86954 1.22018 1.02267 1.03501 0.92415 1.87701 1.11965 1.11315 1.82493 1.22476 0.98613 0.95936 1.04488 1.19176 1.01217 0.92940 0.93864 1.21066 0.98773 0.92333 0.99875 1.21145 1.00324 0.97047 0.95411 1.21206 0.99556 0.99025 0.93804 1.21154 1.00025 0.92728 0.99956 1.21097 0.99161 0.97507 0.94309 1.49350 1.06568 1.02093 1.54914 1.19622 0.77806 0.89786 0.98921 1.21343 1.13289 1.31890 0.91333 0.91692 1.24932 0.95689 0.94852 0.98209 1.69912 1.19222 1.32502 1.31147 0.86360 0.77618 0.79150 0.83635 1.20158 1.20844 1.19642 1.77361 0.86080 1.21769 1.25718 0.91280 0.91118 0.91537 0.82127 0.74679 0.91098 0.90341 0.90815 0.89009 0.88915 0.85727 0.85871 0.86039 0.85848 0.85684 0.92501 0.93876 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.10 9.58 -39.78 -0.38 -6.48 16 4 C 0.30 6.38 7.66 -153.17 -1.17 5.21 16 5 N -0.63 -11.05 5.41 -11.46 -0.06 -11.11 16 6 C 0.54 8.64 6.92 -10.98 -0.08 8.56 16 7 O -0.49 -9.29 13.27 5.55 0.07 -9.22 16 8 C -0.09 -1.11 3.17 -27.88 -0.09 -1.20 16 9 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.14 -1.33 9.08 37.16 0.34 -0.99 16 11 S -0.16 -2.01 20.44 -107.50 -2.20 -4.21 16 12 C -0.07 -0.59 5.77 36.00 0.21 -0.38 16 13 C -0.07 -0.65 5.14 -104.62 -0.54 -1.19 16 14 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 15 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 16 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 17 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 18 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 19 N -0.34 -8.06 3.60 -61.58 -0.22 -8.28 16 20 C 0.26 6.36 6.01 -5.19 -0.03 6.33 16 21 C -0.54 -14.43 9.39 -34.44 -0.32 -14.75 16 22 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 23 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.09 13.29 55.43 0.74 -23.35 16 25 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 N -0.28 -6.65 12.56 33.65 0.42 -6.22 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.16 3.28 5.83 -52.49 -0.31 2.98 16 34 H 0.42 6.61 7.96 -40.82 -0.33 6.29 16 35 H 0.07 0.50 6.92 -51.93 -0.36 0.14 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.09 0.66 7.09 -51.92 -0.37 0.29 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 411.59 15.07 6.20 6.20 Total: -1.00 -32.43 411.59 -11.20 -43.63 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.79 Total: 6.89 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.34 Total: -9.86 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.88 Total: -48.97 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.20 Total: -4.21 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.43 -11.20 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058193779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.905 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds