Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39758 * 125.83965 * 2 1 4 4 C 1.36107 * 107.83039 * 180.14786 * 3 2 1 5 5 N 1.39465 * 126.21882 * 179.84699 * 4 3 2 6 6 C 1.34777 * 119.99910 * 359.69161 * 5 4 3 7 7 O 1.21289 * 120.00288 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00195 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.46456 * 324.99399 * 8 6 5 10 10 C 1.52997 * 109.47238 * 84.99566 * 8 6 5 11 11 S 1.81396 * 109.47192 * 204.99971 * 8 6 5 12 12 C 1.81403 * 103.00044 * 174.99568 * 11 8 6 13 13 C 1.50699 * 109.46864 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99993 * 269.72781 * 13 12 11 15 15 C 1.38234 * 119.99969 * 179.77327 * 14 13 12 16 16 C 1.38236 * 119.99741 * 0.50106 * 15 14 13 17 17 C 1.38235 * 120.00124 * 359.75457 * 16 15 14 18 18 C 1.38229 * 120.00155 * 359.97438 * 17 16 15 19 19 N 1.35260 * 107.56402 * 359.58417 * 4 3 2 20 20 C 1.46496 * 126.04530 * 180.22751 * 19 4 3 21 21 C 1.50702 * 109.47479 * 90.00334 * 20 19 4 22 22 H 1.08005 * 119.99535 * 359.97438 * 21 20 19 23 23 C 1.37870 * 120.00392 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00278 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00162 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47116 * 90.00160 * 25 23 21 27 27 H 1.48504 * 109.47673 * 210.00088 * 25 23 21 28 28 H 1.48498 * 109.47078 * 330.00456 * 25 23 21 29 29 N 1.30849 * 125.83676 * 179.68391 * 2 1 3 30 30 H 1.08996 * 109.47059 * 270.29915 * 1 2 3 31 31 H 1.09004 * 109.46639 * 30.29770 * 1 2 3 32 32 H 1.08998 * 109.46798 * 150.29372 * 1 2 3 33 33 H 1.07997 * 126.08291 * 359.97438 * 3 2 1 34 34 H 0.96998 * 120.00694 * 179.68859 * 5 4 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 10 8 6 36 36 H 1.09001 * 109.46832 * 60.00314 * 10 8 6 37 37 H 1.09004 * 109.47261 * 300.00295 * 10 8 6 38 38 H 1.08994 * 109.47187 * 299.99909 * 12 11 8 39 39 H 1.09005 * 109.46789 * 59.99769 * 12 11 8 40 40 H 1.08002 * 120.00328 * 359.97438 * 14 13 12 41 41 H 1.08007 * 120.00037 * 180.22829 * 15 14 13 42 42 H 1.08002 * 119.99831 * 179.72510 * 16 15 14 43 43 H 1.08000 * 119.99759 * 179.97438 * 17 16 15 44 44 H 1.07995 * 120.00317 * 179.97438 * 18 17 16 45 45 H 1.09005 * 109.47205 * 209.99811 * 20 19 4 46 46 H 1.08999 * 109.47289 * 329.99774 * 20 19 4 47 47 H 0.96997 * 120.00446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6198 0.7122 -0.0033 5 7 4.7513 1.5274 -0.0075 6 6 4.6157 2.8683 -0.0147 7 8 3.5097 3.3661 -0.0182 8 6 5.8384 3.7494 -0.0198 9 1 6.6253 3.2820 0.5721 10 6 6.3255 3.9376 -1.4579 11 16 5.4230 5.3643 0.6943 12 6 7.0255 6.2131 0.7436 13 6 6.8454 7.5930 1.3218 14 6 6.5720 8.6614 0.4882 15 6 6.4021 9.9264 1.0191 16 6 6.5159 10.1248 2.3824 17 6 6.7945 9.0574 3.2153 18 6 6.9588 7.7914 2.6851 19 7 3.6093 -0.6404 0.0040 20 6 4.7871 -1.5115 0.0083 21 6 5.1915 -1.8027 1.4305 22 1 4.6277 -1.3806 2.2494 23 6 6.2810 -2.6078 1.6865 24 7 6.9672 -3.1222 0.6894 25 14 6.7826 -2.9681 3.4494 26 1 6.0824 -4.1888 3.9237 27 1 8.2506 -3.1836 3.5123 28 1 6.4136 -1.8184 4.3138 29 7 2.2732 -1.0608 0.0059 30 1 -0.3633 0.0054 1.0276 31 1 -0.3633 0.8874 -0.5185 32 1 -0.3633 -0.8926 -0.5093 33 1 1.9903 2.1596 -0.0004 34 1 5.6359 1.1295 -0.0051 35 1 7.2101 4.5745 -1.4615 36 1 5.5384 4.4050 -2.0498 37 1 6.5751 2.9672 -1.8870 38 1 7.7181 5.6458 1.3653 39 1 7.4259 6.2923 -0.2672 40 1 6.4879 8.5072 -0.5774 41 1 6.1849 10.7605 0.3682 42 1 6.3876 11.1139 2.7966 43 1 6.8838 9.2125 4.2804 44 1 7.1769 6.9575 3.3358 45 1 4.5497 -2.4460 -0.5004 46 1 5.6082 -1.0149 -0.5086 47 1 7.7339 -3.6884 0.8694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058193779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = 44.808911 kcal Electronic energy + Delta-G solvation = -28224.498459 eV Core-core repulsion = 24306.288375 eV Total energy + Delta-G solvation = -3918.210084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.48572 -40.70442 -40.06688 -36.33630 -35.64599 -34.47865 -33.82512 -33.67616 -31.77832 -30.78866 -29.83206 -27.97701 -27.83520 -25.99705 -24.76001 -23.47204 -22.97172 -22.31779 -21.34555 -20.75567 -18.92652 -18.59053 -18.06885 -17.81644 -17.18181 -16.79330 -16.56946 -16.21923 -16.19516 -16.01885 -15.69684 -15.45642 -15.33492 -14.60759 -14.46604 -14.35424 -14.19558 -14.06539 -13.90492 -13.77805 -13.59387 -13.46299 -13.39033 -13.13952 -13.00463 -12.87253 -12.74737 -12.73058 -12.31514 -12.04182 -11.96195 -11.89431 -11.71431 -11.48509 -11.01823 -10.91397 -10.78274 -9.81848 -9.66868 -9.59870 -9.11946 -8.72417 -8.38352 -6.55639 -0.09660 0.51405 0.64516 0.80007 1.34543 1.35919 1.38419 1.47088 1.51874 1.59877 2.00726 2.15678 2.33121 2.92131 2.95573 3.26797 3.68173 3.73284 3.80443 3.85682 3.90603 4.16368 4.19890 4.27267 4.30541 4.49044 4.58140 4.60316 4.64391 4.66727 4.70896 4.75291 4.80356 4.83627 4.88108 4.93311 5.06052 5.10903 5.16680 5.18718 5.21120 5.49163 5.56279 5.63147 5.63821 5.74814 5.92755 6.07901 6.10404 6.20868 6.54211 6.84114 6.98837 7.16397 8.68093 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.002394 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.926848 B =11691.037796 C =13383.621516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.307 4.307 4 C 0.300 3.700 5 N -0.632 5.632 6 C 0.539 3.461 7 O -0.523 6.523 8 C -0.081 4.081 9 H 0.132 0.868 10 C -0.139 4.139 11 S -0.222 6.222 12 C -0.049 4.049 13 C -0.087 4.087 14 C -0.111 4.111 15 C -0.129 4.129 16 C -0.122 4.122 17 C -0.131 4.131 18 C -0.117 4.117 19 N -0.365 5.365 20 C 0.272 3.728 21 C -0.556 4.556 22 H 0.046 0.954 23 C 0.029 3.971 24 N -0.912 5.912 25 Si 0.967 3.033 26 H -0.277 1.277 27 H -0.267 1.267 28 H -0.272 1.272 29 N -0.328 5.328 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.165 0.835 34 H 0.423 0.577 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.128 0.872 45 H 0.028 0.972 46 H 0.050 0.950 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 24.583 -1.132 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.339 4.339 4 C 0.077 3.923 5 N -0.280 5.280 6 C 0.325 3.675 7 O -0.397 6.397 8 C -0.212 4.212 9 H 0.150 0.850 10 C -0.198 4.198 11 S 0.008 5.992 12 C -0.196 4.196 13 C -0.089 4.089 14 C -0.131 4.131 15 C -0.147 4.147 16 C -0.140 4.140 17 C -0.149 4.149 18 C -0.136 4.136 19 N -0.151 5.151 20 C 0.153 3.847 21 C -0.594 4.594 22 H 0.064 0.936 23 C -0.173 4.173 24 N -0.550 5.550 25 Si 0.791 3.209 26 H -0.203 1.203 27 H -0.192 1.192 28 H -0.196 1.196 29 N -0.153 5.153 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.183 0.817 34 H 0.261 0.739 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.146 0.854 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.480 23.812 -0.887 23.957 hybrid contribution 1.956 -0.714 0.479 2.137 sum 4.436 23.098 -0.408 23.523 Atomic orbital electron populations 1.20227 0.83892 1.04084 1.03709 1.22879 0.98757 0.89990 0.99003 1.21459 0.89174 1.00786 1.22457 1.18246 0.89357 0.82883 1.01772 1.42803 1.07748 1.05500 1.71978 1.20346 0.91201 0.80768 0.75156 1.90653 1.27657 1.73705 1.47638 1.23243 0.97723 0.95948 1.04311 0.84990 1.22046 1.03009 1.04350 0.90357 1.87912 1.16039 1.12329 1.82880 1.22487 0.95985 0.95200 1.05892 1.19323 1.02103 0.93303 0.94163 1.21308 0.98664 0.92618 1.00505 1.21466 0.99835 0.97461 0.95952 1.21539 0.98711 0.99926 0.93873 1.21436 0.99841 0.92632 1.01014 1.21295 0.99633 0.98165 0.94550 1.49173 1.06366 1.02740 1.56780 1.19247 0.78587 0.89041 0.97815 1.21388 1.13714 1.32692 0.91590 0.93608 1.25649 0.95373 0.94271 1.01985 1.69978 1.19516 1.32618 1.32894 0.85420 0.77942 0.78608 0.78920 1.20265 1.19197 1.19634 1.77312 0.86387 1.23500 1.28135 0.89721 0.88663 0.90501 0.81732 0.73942 0.88147 0.91295 0.90316 0.87915 0.87004 0.84716 0.83947 0.83957 0.84339 0.85426 0.95387 0.93217 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.75 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.40 7.21 43.07 0.31 2.71 16 3 C -0.31 -12.88 9.58 22.14 0.21 -12.67 16 4 C 0.30 12.95 7.66 131.32 1.01 13.96 16 5 N -0.63 -22.18 5.41 -308.56 -1.67 -23.85 16 6 C 0.54 17.14 6.92 87.66 0.61 17.74 16 7 O -0.52 -19.82 13.27 -3.06 -0.04 -19.86 16 8 C -0.08 -1.79 3.17 29.85 0.09 -1.69 16 9 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 10 C -0.14 -2.31 9.08 71.98 0.65 -1.66 16 11 S -0.22 -5.23 20.44 -56.49 -1.15 -6.38 16 12 C -0.05 -0.75 5.77 71.24 0.41 -0.34 16 13 C -0.09 -1.49 5.14 -19.87 -0.10 -1.59 16 14 C -0.11 -1.73 9.70 22.27 0.22 -1.51 16 15 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 16 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 17 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 18 C -0.12 -1.98 9.70 22.27 0.22 -1.76 16 19 N -0.37 -17.63 3.60 -348.72 -1.26 -18.89 16 20 C 0.27 13.93 6.01 85.63 0.51 14.45 16 21 C -0.56 -30.29 9.39 25.60 0.24 -30.05 16 22 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 23 C 0.03 1.54 5.46 84.65 0.46 2.00 16 24 N -0.91 -49.36 13.29 21.44 0.28 -49.08 16 25 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 N -0.33 -15.73 12.56 -47.44 -0.60 -16.33 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.17 6.77 5.83 -2.91 -0.02 6.75 16 34 H 0.42 13.46 7.96 -92.71 -0.74 12.72 16 35 H 0.10 1.10 6.92 -2.39 -0.02 1.08 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 39 H 0.11 1.27 7.09 -2.39 -0.02 1.26 16 40 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.05 2.43 7.50 -2.39 -0.02 2.41 16 47 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -71.34 411.59 4.10 -67.24 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.25 Total: 29.34 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 6.26 Total: -6.09 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -3.24 Total: -108.15 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.15 Total: -6.38 kcal Total: -71.34 4.10 -67.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058193779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.049 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds