Wall clock time and date at job start Tue Mar 31 2020 05:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39761 * 125.83713 * 2 1 4 4 C 1.36114 * 107.82609 * 180.02562 * 3 2 1 5 5 N 1.39473 * 126.21308 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00252 * 359.97438 * 5 4 3 7 7 O 1.21296 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00196 * 180.02562 * 6 5 4 9 9 H 1.08990 * 109.47043 * 39.99577 * 8 6 5 10 10 C 1.53006 * 109.46833 * 279.99944 * 8 6 5 11 11 S 1.81396 * 109.47102 * 160.00042 * 8 6 5 12 12 C 1.81404 * 102.99909 * 184.99611 * 11 8 6 13 13 C 1.50694 * 109.47320 * 179.97438 * 12 11 8 14 14 C 1.38238 * 120.00380 * 269.73268 * 13 12 11 15 15 C 1.38239 * 120.00110 * 179.76548 * 14 13 12 16 16 C 1.38233 * 119.99725 * 0.50272 * 15 14 13 17 17 C 1.38232 * 120.00179 * 359.75294 * 16 15 14 18 18 C 1.38235 * 120.00301 * 359.97438 * 17 16 15 19 19 N 1.35256 * 107.56876 * 0.02562 * 4 3 2 20 20 C 1.46503 * 126.04776 * 179.97438 * 19 4 3 21 21 C 1.50703 * 109.46705 * 269.99796 * 20 19 4 22 22 H 1.07994 * 120.00293 * 0.02562 * 21 20 19 23 23 C 1.37876 * 119.99660 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00293 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99872 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47063 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47224 * 120.00203 * 25 23 21 28 28 H 1.48505 * 109.46850 * 240.00180 * 25 23 21 29 29 N 1.30847 * 125.83772 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46966 * 270.01936 * 1 2 3 31 31 H 1.08994 * 109.47444 * 30.02388 * 1 2 3 32 32 H 1.09004 * 109.47212 * 150.02613 * 1 2 3 33 33 H 1.07997 * 126.08300 * 0.02654 * 3 2 1 34 34 H 0.97001 * 120.00169 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.46689 * 179.97438 * 10 8 6 36 36 H 1.09002 * 109.47101 * 300.00102 * 10 8 6 37 37 H 1.08998 * 109.46823 * 59.99707 * 10 8 6 38 38 H 1.08995 * 109.47161 * 300.00038 * 12 11 8 39 39 H 1.09003 * 109.46644 * 60.00138 * 12 11 8 40 40 H 1.07996 * 119.99876 * 359.97438 * 14 13 12 41 41 H 1.07998 * 119.99982 * 180.23032 * 15 14 13 42 42 H 1.08001 * 119.99803 * 179.72342 * 16 15 14 43 43 H 1.08001 * 120.00396 * 179.97438 * 17 16 15 44 44 H 1.07994 * 120.00360 * 179.97438 * 18 17 16 45 45 H 1.09001 * 109.47186 * 29.99927 * 20 19 4 46 46 H 1.08996 * 109.46945 * 150.00020 * 20 19 4 47 47 H 0.96997 * 120.00136 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 -0.0006 5 7 4.7512 1.5275 -0.0003 6 6 4.6157 2.8684 0.0002 7 8 3.5095 3.3661 -0.0002 8 6 5.8383 3.7494 -0.0001 9 1 6.5930 3.3233 -0.6610 10 6 6.3991 3.8439 1.4204 11 16 5.3891 5.4069 -0.5844 12 6 6.9882 6.2601 -0.6603 13 6 6.7809 7.6743 -1.1378 14 6 6.8307 7.9619 -2.4890 15 6 6.6358 9.2584 -2.9274 16 6 6.4013 10.2689 -2.0138 17 6 6.3568 9.9822 -0.6623 18 6 6.5461 8.6849 -0.2243 19 7 3.6092 -0.6404 -0.0015 20 6 4.7871 -1.5116 -0.0029 21 6 5.1899 -1.8093 -1.4243 22 1 4.6253 -1.3911 -2.2444 23 6 6.2798 -2.6148 -1.6775 24 7 6.9677 -3.1238 -0.6787 25 14 6.7796 -2.9834 -3.4393 26 1 5.8499 -2.2964 -4.3715 27 1 8.1635 -2.4986 -3.6729 28 1 6.7221 -4.4486 -3.6739 29 7 2.2731 -1.0607 -0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.9901 2.1597 0.0004 34 1 5.6358 1.1296 -0.0011 35 1 7.2836 4.4808 1.4201 36 1 5.6443 4.2700 2.0813 37 1 6.6689 2.8479 1.7714 38 1 7.4402 6.2737 0.3315 39 1 7.6470 5.7361 -1.3527 40 1 7.0186 7.1732 -3.2024 41 1 6.6710 9.4824 -3.9833 42 1 6.2534 11.2826 -2.3560 43 1 6.1740 10.7718 0.0516 44 1 6.5117 8.4610 0.8317 45 1 5.6088 -1.0125 0.5107 46 1 4.5502 -2.4435 0.5104 47 1 7.7342 -3.6908 -0.8569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058193780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:36 Heat of formation + Delta-G solvation = 61.322120 kcal Electronic energy + Delta-G solvation = -28216.804943 eV Core-core repulsion = 24299.310925 eV Total energy + Delta-G solvation = -3917.494017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.91029 -39.49668 -39.26447 -34.80445 -33.83931 -33.51023 -33.01865 -32.05369 -31.19563 -29.17286 -28.24957 -27.32433 -26.06321 -24.96165 -22.92561 -22.88053 -21.93703 -21.34944 -19.80835 -19.29864 -17.43278 -16.97205 -16.81441 -16.64980 -16.15751 -15.59362 -15.54260 -15.37341 -14.95990 -14.57870 -14.54758 -14.11276 -14.00773 -13.76119 -13.47383 -13.24550 -13.01596 -12.90715 -12.82006 -12.70152 -12.51548 -12.18495 -12.02356 -12.00601 -11.77430 -11.59397 -11.43935 -11.32921 -11.08712 -10.93993 -10.42107 -10.37031 -10.10358 -9.95103 -9.81827 -9.53087 -9.21764 -8.96497 -8.75962 -7.94601 -7.80138 -7.46890 -6.36926 -4.45295 0.66517 1.11340 1.53236 2.17220 2.33295 2.80097 3.05807 3.12355 3.21633 3.28003 3.55960 3.57393 3.74446 4.21457 4.30008 4.42727 4.46608 4.60294 4.70631 4.79093 4.82501 4.85264 4.96512 5.12012 5.21132 5.28357 5.32002 5.35244 5.41110 5.62816 5.66260 5.73670 5.80293 6.02961 6.14317 6.14919 6.15964 6.21273 6.23531 6.25568 6.39097 6.64032 6.67636 6.80322 7.01278 7.47216 7.54309 7.58888 7.76191 7.85675 8.22177 8.59327 8.68397 9.22552 10.70174 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009938 B = 0.002363 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.921097 B =11844.678741 C =13505.486730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.540 3.460 7 O -0.493 6.493 8 C -0.096 4.096 9 H 0.113 0.887 10 C -0.144 4.144 11 S -0.163 6.163 12 C -0.069 4.069 13 C -0.070 4.070 14 C -0.101 4.101 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.101 4.101 19 N -0.344 5.344 20 C 0.256 3.744 21 C -0.539 4.539 22 H 0.066 0.934 23 C 0.066 3.934 24 N -0.890 5.890 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.279 1.279 29 N -0.284 5.284 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.416 0.584 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 22.984 1.824 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.325 4.325 4 C 0.079 3.921 5 N -0.281 5.281 6 C 0.324 3.676 7 O -0.366 6.366 8 C -0.228 4.228 9 H 0.132 0.868 10 C -0.203 4.203 11 S 0.067 5.933 12 C -0.216 4.216 13 C -0.072 4.072 14 C -0.121 4.121 15 C -0.139 4.139 16 C -0.136 4.136 17 C -0.139 4.139 18 C -0.121 4.121 19 N -0.129 5.129 20 C 0.138 3.862 21 C -0.578 4.578 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.205 1.205 29 N -0.109 5.109 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.253 0.747 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.338 22.220 1.638 22.320 hybrid contribution 2.352 -0.350 -0.705 2.481 sum 3.691 21.869 0.934 22.198 Atomic orbital electron populations 1.20022 0.87538 1.02488 1.02058 1.22031 0.96545 0.90996 1.01791 1.21277 0.89049 1.00501 1.21698 1.17875 0.87835 0.83342 1.03069 1.42615 1.08433 1.05144 1.71927 1.19508 0.90023 0.81283 0.76779 1.90684 1.25953 1.73372 1.46585 1.23295 0.99644 0.97044 1.02800 0.86842 1.22028 1.01778 1.03667 0.92807 1.87713 1.10824 1.07154 1.87584 1.22481 0.98685 0.95516 1.04937 1.19177 1.01257 0.92889 0.93850 1.21098 0.99120 0.96996 0.94871 1.21154 1.00026 0.92882 0.99797 1.21204 0.99671 0.99317 0.93409 1.21143 1.00316 0.96542 0.95922 1.21067 0.98838 0.92566 0.99584 1.49352 1.06569 1.02087 1.54918 1.19629 0.77807 0.89780 0.98950 1.21384 1.13209 1.31827 0.91355 0.91627 1.24941 0.95702 0.94877 0.98205 1.69926 1.19153 1.32668 1.31032 0.86309 0.78337 0.78498 0.83647 1.19503 1.20640 1.20496 1.77363 0.86078 1.21767 1.25719 0.91355 0.91096 0.91482 0.82124 0.74684 0.91086 0.90380 0.90783 0.88931 0.89032 0.85695 0.85852 0.86043 0.85877 0.85729 0.93881 0.92493 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.57 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.09 9.58 -39.78 -0.38 -6.48 16 4 C 0.30 6.37 7.66 -153.16 -1.17 5.20 16 5 N -0.63 -11.01 5.41 -11.46 -0.06 -11.07 16 6 C 0.54 8.61 6.97 -10.99 -0.08 8.54 16 7 O -0.49 -9.28 13.17 5.54 0.07 -9.21 16 8 C -0.10 -1.12 3.18 -27.88 -0.09 -1.21 16 9 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 10 C -0.14 -1.33 9.08 37.16 0.34 -1.00 16 11 S -0.16 -1.98 20.38 -107.50 -2.19 -4.17 16 12 C -0.07 -0.59 5.77 36.00 0.21 -0.38 16 13 C -0.07 -0.64 5.14 -104.62 -0.54 -1.18 16 14 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 15 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 16 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 17 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 18 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 19 N -0.34 -8.05 3.60 -61.57 -0.22 -8.27 16 20 C 0.26 6.34 6.01 -5.19 -0.03 6.31 16 21 C -0.54 -14.39 9.39 -34.44 -0.32 -14.71 16 22 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 23 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 25 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 N -0.28 -6.64 12.56 33.65 0.42 -6.22 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.16 3.28 5.83 -52.49 -0.31 2.97 16 34 H 0.42 6.58 7.96 -40.82 -0.33 6.26 16 35 H 0.07 0.50 6.92 -51.93 -0.36 0.14 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.66 7.09 -51.93 -0.37 0.29 16 39 H 0.09 0.70 8.08 -51.92 -0.42 0.28 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 46 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 411.49 15.07 6.20 6.20 Total: -1.00 -32.43 411.49 -11.19 -43.62 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.79 Total: 6.81 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -4.34 Total: -9.88 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.88 Total: -48.90 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.19 Total: -4.17 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.43 -11.19 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058193780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.943 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds