Wall clock time and date at job start Tue Mar 31 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39761 * 125.83713 * 2 1 4 4 C 1.36114 * 107.82609 * 180.02562 * 3 2 1 5 5 N 1.39473 * 126.21308 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00252 * 359.97438 * 5 4 3 7 7 O 1.21296 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00196 * 180.02562 * 6 5 4 9 9 H 1.08990 * 109.47043 * 39.99577 * 8 6 5 10 10 C 1.53006 * 109.46833 * 279.99944 * 8 6 5 11 11 S 1.81396 * 109.47102 * 160.00042 * 8 6 5 12 12 C 1.81404 * 102.99909 * 184.99611 * 11 8 6 13 13 C 1.50694 * 109.47320 * 179.97438 * 12 11 8 14 14 C 1.38238 * 120.00380 * 269.73268 * 13 12 11 15 15 C 1.38239 * 120.00110 * 179.76548 * 14 13 12 16 16 C 1.38233 * 119.99725 * 0.50272 * 15 14 13 17 17 C 1.38232 * 120.00179 * 359.75294 * 16 15 14 18 18 C 1.38235 * 120.00301 * 359.97438 * 17 16 15 19 19 N 1.35256 * 107.56876 * 0.02562 * 4 3 2 20 20 C 1.46503 * 126.04776 * 179.97438 * 19 4 3 21 21 C 1.50703 * 109.46705 * 269.99796 * 20 19 4 22 22 H 1.07994 * 120.00293 * 0.02562 * 21 20 19 23 23 C 1.37876 * 119.99660 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00293 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99872 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47063 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47224 * 120.00203 * 25 23 21 28 28 H 1.48505 * 109.46850 * 240.00180 * 25 23 21 29 29 N 1.30847 * 125.83772 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46966 * 270.01936 * 1 2 3 31 31 H 1.08994 * 109.47444 * 30.02388 * 1 2 3 32 32 H 1.09004 * 109.47212 * 150.02613 * 1 2 3 33 33 H 1.07997 * 126.08300 * 0.02654 * 3 2 1 34 34 H 0.97001 * 120.00169 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.46689 * 179.97438 * 10 8 6 36 36 H 1.09002 * 109.47101 * 300.00102 * 10 8 6 37 37 H 1.08998 * 109.46823 * 59.99707 * 10 8 6 38 38 H 1.08995 * 109.47161 * 300.00038 * 12 11 8 39 39 H 1.09003 * 109.46644 * 60.00138 * 12 11 8 40 40 H 1.07996 * 119.99876 * 359.97438 * 14 13 12 41 41 H 1.07998 * 119.99982 * 180.23032 * 15 14 13 42 42 H 1.08001 * 119.99803 * 179.72342 * 16 15 14 43 43 H 1.08001 * 120.00396 * 179.97438 * 17 16 15 44 44 H 1.07994 * 120.00360 * 179.97438 * 18 17 16 45 45 H 1.09001 * 109.47186 * 29.99927 * 20 19 4 46 46 H 1.08996 * 109.46945 * 150.00020 * 20 19 4 47 47 H 0.96997 * 120.00136 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 -0.0006 5 7 4.7512 1.5275 -0.0003 6 6 4.6157 2.8684 0.0002 7 8 3.5095 3.3661 -0.0002 8 6 5.8383 3.7494 -0.0001 9 1 6.5930 3.3233 -0.6610 10 6 6.3991 3.8439 1.4204 11 16 5.3891 5.4069 -0.5844 12 6 6.9882 6.2601 -0.6603 13 6 6.7809 7.6743 -1.1378 14 6 6.8307 7.9619 -2.4890 15 6 6.6358 9.2584 -2.9274 16 6 6.4013 10.2689 -2.0138 17 6 6.3568 9.9822 -0.6623 18 6 6.5461 8.6849 -0.2243 19 7 3.6092 -0.6404 -0.0015 20 6 4.7871 -1.5116 -0.0029 21 6 5.1899 -1.8093 -1.4243 22 1 4.6253 -1.3911 -2.2444 23 6 6.2798 -2.6148 -1.6775 24 7 6.9677 -3.1238 -0.6787 25 14 6.7796 -2.9834 -3.4393 26 1 5.8499 -2.2964 -4.3715 27 1 8.1635 -2.4986 -3.6729 28 1 6.7221 -4.4486 -3.6739 29 7 2.2731 -1.0607 -0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.9901 2.1597 0.0004 34 1 5.6358 1.1296 -0.0011 35 1 7.2836 4.4808 1.4201 36 1 5.6443 4.2700 2.0813 37 1 6.6689 2.8479 1.7714 38 1 7.4402 6.2737 0.3315 39 1 7.6470 5.7361 -1.3527 40 1 7.0186 7.1732 -3.2024 41 1 6.6710 9.4824 -3.9833 42 1 6.2534 11.2826 -2.3560 43 1 6.1740 10.7718 0.0516 44 1 6.5117 8.4610 0.8317 45 1 5.6088 -1.0125 0.5107 46 1 4.5502 -2.4435 0.5104 47 1 7.7342 -3.6908 -0.8569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058193780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:35 Heat of formation + Delta-G solvation = 44.859009 kcal Electronic energy + Delta-G solvation = -28217.518837 eV Core-core repulsion = 24299.310925 eV Total energy + Delta-G solvation = -3918.207911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.48460 -40.70265 -40.06403 -36.33790 -35.64813 -34.48433 -33.82096 -33.67326 -31.77583 -30.78623 -29.82263 -27.97329 -27.83553 -25.99157 -24.76436 -23.47023 -22.98074 -22.31714 -21.34580 -20.74624 -18.92921 -18.59112 -18.05607 -17.81638 -17.17325 -16.81293 -16.55654 -16.22715 -16.19199 -16.02560 -15.68894 -15.43628 -15.33938 -14.60070 -14.47810 -14.35152 -14.19362 -14.06896 -13.89962 -13.77808 -13.59372 -13.46705 -13.38158 -13.13940 -13.00294 -12.87643 -12.74325 -12.72466 -12.33868 -12.03630 -11.95903 -11.89274 -11.70418 -11.48503 -11.00399 -10.91299 -10.77973 -9.81614 -9.66720 -9.59537 -9.11901 -8.71727 -8.38524 -6.55691 -0.08678 0.51586 0.66534 0.78531 1.33333 1.35665 1.38486 1.48469 1.52592 1.59131 2.00572 2.15862 2.33111 2.91891 2.95784 3.27225 3.68583 3.73499 3.80453 3.85966 3.90779 4.16578 4.19829 4.27516 4.30690 4.49221 4.58074 4.60437 4.64557 4.66668 4.70668 4.75465 4.80521 4.83876 4.88195 4.93429 5.06044 5.11043 5.16878 5.18806 5.21006 5.49410 5.56470 5.63338 5.64068 5.74782 5.92776 6.08019 6.10616 6.20970 6.54490 6.84266 6.98918 7.16425 8.68087 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009938 B = 0.002363 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.921097 B =11844.678741 C =13505.486730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.307 4.307 4 C 0.300 3.700 5 N -0.632 5.632 6 C 0.539 3.461 7 O -0.522 6.522 8 C -0.081 4.081 9 H 0.133 0.867 10 C -0.140 4.140 11 S -0.219 6.219 12 C -0.050 4.050 13 C -0.087 4.087 14 C -0.116 4.116 15 C -0.131 4.131 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.111 4.111 19 N -0.365 5.365 20 C 0.272 3.728 21 C -0.555 4.555 22 H 0.045 0.955 23 C 0.029 3.971 24 N -0.912 5.912 25 Si 0.967 3.033 26 H -0.278 1.278 27 H -0.263 1.263 28 H -0.276 1.276 29 N -0.328 5.328 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.165 0.835 34 H 0.423 0.577 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 24.654 1.375 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.339 4.339 4 C 0.078 3.922 5 N -0.280 5.280 6 C 0.325 3.675 7 O -0.396 6.396 8 C -0.213 4.213 9 H 0.151 0.849 10 C -0.199 4.199 11 S 0.011 5.989 12 C -0.197 4.197 13 C -0.089 4.089 14 C -0.136 4.136 15 C -0.149 4.149 16 C -0.141 4.141 17 C -0.147 4.147 18 C -0.131 4.131 19 N -0.151 5.151 20 C 0.153 3.847 21 C -0.593 4.593 22 H 0.064 0.936 23 C -0.173 4.173 24 N -0.550 5.550 25 Si 0.792 3.208 26 H -0.203 1.203 27 H -0.188 1.188 28 H -0.201 1.201 29 N -0.153 5.153 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.261 0.739 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.428 23.900 1.205 24.053 hybrid contribution 1.970 -0.730 -0.554 2.173 sum 4.398 23.170 0.651 23.592 Atomic orbital electron populations 1.20225 0.83904 1.03871 1.03917 1.22876 0.98756 0.89998 0.99002 1.21461 0.89175 1.00776 1.22475 1.18245 0.89355 0.82877 1.01763 1.42786 1.07739 1.05478 1.72004 1.20348 0.91196 0.80783 0.75163 1.90656 1.27658 1.73688 1.47647 1.23253 0.97546 0.95655 1.04832 0.84876 1.22056 1.02467 1.04562 0.90767 1.87923 1.14904 1.08174 1.87915 1.22490 0.96098 0.94735 1.06355 1.19323 1.02154 0.93226 0.94170 1.21298 0.99562 0.97673 0.95091 1.21438 0.99810 0.92761 1.00899 1.21537 0.98829 1.00299 0.93397 1.21461 0.99821 0.96861 0.96576 1.21306 0.98763 0.92918 1.00140 1.49175 1.06365 1.02736 1.56782 1.19253 0.78588 0.89044 0.97826 1.21413 1.13636 1.32664 0.91581 0.93635 1.25656 0.95378 0.94295 1.01975 1.69989 1.19466 1.32791 1.32775 0.85365 0.78466 0.78217 0.78785 1.20256 1.18796 1.20109 1.77313 0.86390 1.23494 1.28152 0.89132 0.88958 0.90799 0.81736 0.73934 0.88159 0.91297 0.90315 0.87056 0.87924 0.85393 0.84321 0.83964 0.83974 0.84754 0.93204 0.95377 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.75 10.44 71.23 0.74 -1.01 16 2 C 0.06 2.40 7.21 43.07 0.31 2.71 16 3 C -0.31 -12.88 9.58 22.14 0.21 -12.67 16 4 C 0.30 12.95 7.66 131.32 1.01 13.95 16 5 N -0.63 -22.10 5.41 -308.56 -1.67 -23.77 16 6 C 0.54 17.09 6.97 87.66 0.61 17.70 16 7 O -0.52 -19.82 13.17 -3.08 -0.04 -19.86 16 8 C -0.08 -1.79 3.18 29.85 0.09 -1.70 16 9 H 0.13 2.41 8.14 -2.40 -0.02 2.39 16 10 C -0.14 -2.33 9.08 71.98 0.65 -1.67 16 11 S -0.22 -5.15 20.38 -56.49 -1.15 -6.30 16 12 C -0.05 -0.76 5.77 71.23 0.41 -0.35 16 13 C -0.09 -1.48 5.14 -19.87 -0.10 -1.58 16 14 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 15 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 16 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 17 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 18 C -0.11 -1.73 9.70 22.27 0.22 -1.52 16 19 N -0.37 -17.62 3.60 -348.71 -1.26 -18.88 16 20 C 0.27 13.91 6.01 85.63 0.51 14.42 16 21 C -0.55 -30.22 9.39 25.60 0.24 -29.98 16 22 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 23 C 0.03 1.52 5.46 84.65 0.46 1.98 16 24 N -0.91 -49.29 13.29 21.45 0.28 -49.00 16 25 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 28 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 29 N -0.33 -15.74 12.56 -47.45 -0.60 -16.34 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.17 6.77 5.83 -2.91 -0.02 6.75 16 34 H 0.42 13.40 7.96 -92.71 -0.74 12.66 16 35 H 0.10 1.10 6.92 -2.39 -0.02 1.08 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.27 7.09 -2.39 -0.02 1.25 16 39 H 0.10 1.35 8.08 -2.39 -0.02 1.33 16 40 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 43 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.05 2.43 7.50 -2.39 -0.02 2.42 16 46 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -71.36 411.49 4.10 -67.26 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.25 Total: 29.12 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 6.26 Total: -6.11 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.24 Total: -107.99 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.15 Total: -6.30 kcal Total: -71.36 4.10 -67.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058193780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.116 kcal (2) G-P(sol) polarization free energy of solvation -71.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds