Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47297 * 2 1 4 4 C 1.46893 * 111.00242 * 159.92905 * 3 2 1 5 5 C 1.53001 * 109.47057 * 287.15243 * 4 3 2 6 6 C 1.50696 * 109.47571 * 183.73985 * 5 4 3 7 7 O 1.21295 * 119.99727 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00459 * 180.02562 * 6 5 4 9 9 C 1.37097 * 120.00308 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99680 * 8.84561 * 9 8 6 11 11 C 1.38943 * 120.00159 * 188.84451 * 9 8 6 12 12 N 1.31413 * 120.00199 * 28.42420 * 11 9 8 13 13 Si 1.86807 * 120.00261 * 208.42132 * 11 9 8 14 14 H 1.48497 * 109.46918 * 94.99637 * 13 11 9 15 15 H 1.48503 * 109.46891 * 214.99494 * 13 11 9 16 16 H 1.48498 * 109.46946 * 334.99684 * 13 11 9 17 17 C 1.46504 * 119.99656 * 359.97438 * 8 6 5 18 18 C 1.47193 * 109.47084 * 84.10986 * 17 8 6 19 19 N 5.44154 * 113.13599 * 110.00778 * 2 1 3 20 20 C 1.46902 * 110.99631 * 283.87970 * 3 2 1 21 21 H 1.09004 * 109.46959 * 192.83687 * 20 3 2 22 22 C 1.52999 * 109.47450 * 312.83596 * 20 3 2 23 23 C 1.50702 * 109.47219 * 72.84215 * 20 3 2 24 24 C 1.38290 * 119.96973 * 224.61982 * 23 20 3 25 25 C 1.38247 * 120.10995 * 180.02562 * 24 23 20 26 26 C 1.38163 * 120.05820 * 359.97053 * 25 24 23 27 27 C 1.38715 * 119.94128 * 359.77188 * 26 25 24 28 28 O 1.35900 * 120.05779 * 180.25933 * 27 26 25 29 29 C 1.42905 * 116.99701 * 0.24773 * 28 27 26 30 30 C 1.38115 * 119.97427 * 44.63714 * 23 20 3 31 31 H 1.09006 * 109.47594 * 69.73620 * 1 2 3 32 32 H 1.09000 * 109.47336 * 189.73847 * 1 2 3 33 33 H 1.09000 * 109.47213 * 309.74559 * 1 2 3 34 34 H 1.09000 * 109.47242 * 239.99897 * 2 1 3 35 35 H 1.08992 * 109.47322 * 120.00151 * 2 1 3 36 36 H 1.09004 * 109.47521 * 47.15359 * 4 3 2 37 37 H 1.08998 * 109.47750 * 167.15607 * 4 3 2 38 38 H 1.09002 * 109.47203 * 303.74177 * 5 4 3 39 39 H 1.09000 * 109.47196 * 63.74266 * 5 4 3 40 40 H 0.96997 * 120.00377 * 179.97438 * 12 11 9 41 41 H 1.09000 * 109.46968 * 204.11313 * 17 8 6 42 42 H 1.08997 * 109.47101 * 324.10791 * 17 8 6 43 43 H 1.09000 * 109.46924 * 69.21910 * 22 20 3 44 44 H 1.09001 * 109.46804 * 189.21682 * 22 20 3 45 45 H 1.09000 * 109.46940 * 309.21962 * 22 20 3 46 46 H 1.07998 * 119.94287 * 0.03468 * 24 23 20 47 47 H 1.07994 * 119.96838 * 180.02562 * 25 24 23 48 48 H 1.07997 * 120.03005 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.46765 * 180.02562 * 29 28 27 50 50 H 1.08993 * 109.47282 * 300.00195 * 29 28 27 51 51 H 1.09000 * 109.46768 * 60.00488 * 29 28 27 52 52 H 1.08006 * 120.02720 * 359.97438 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4095 1.4520 0.4706 5 6 3.4487 1.2107 1.9810 6 6 4.8622 1.3701 2.4787 7 8 5.7508 1.6496 1.7019 8 7 5.1390 1.2020 3.7870 9 6 6.4248 1.3475 4.2399 10 1 7.1886 1.7345 3.5816 11 6 6.7453 0.9972 5.5457 12 7 6.0607 0.0594 6.1613 13 14 8.1494 1.8591 6.4262 14 1 7.6112 2.9820 7.2353 15 1 8.8414 0.8938 7.3177 16 1 9.1116 2.3865 5.4257 17 6 4.0656 0.8649 4.7254 18 6 3.8408 -0.5897 4.7117 19 7 3.6680 -1.7121 4.7019 20 6 1.8849 1.9909 -1.3314 21 1 2.4537 2.9202 -1.3670 22 6 2.4216 1.0239 -2.3886 23 6 0.4319 2.2806 -1.6069 24 6 -0.1146 1.9634 -2.8370 25 6 -1.4471 2.2284 -3.0930 26 6 -2.2364 2.8103 -2.1197 27 6 -1.6919 3.1244 -0.8832 28 8 -2.4674 3.6920 0.0777 29 6 -3.8369 3.9326 -0.2522 30 6 -0.3528 2.8628 -0.6307 31 1 -0.3634 0.3559 -0.9641 32 1 -0.3634 -1.0128 0.1738 33 1 -0.3634 0.6571 0.7902 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 4.0015 0.6888 -0.0347 37 1 3.8211 2.4367 0.2493 38 1 2.8038 1.9332 2.4812 39 1 3.0993 0.2011 2.1969 40 1 6.2847 -0.1854 7.0727 41 1 4.3490 1.1794 5.7298 42 1 3.1500 1.3769 4.4292 43 1 1.7554 0.1646 -2.4666 44 1 2.4743 1.5313 -3.3518 45 1 3.4173 0.6867 -2.1005 46 1 0.5006 1.5079 -3.5989 47 1 -1.8716 1.9794 -4.0543 48 1 -3.2773 3.0167 -2.3200 49 1 -4.3413 4.3878 0.6002 50 1 -3.8917 4.6052 -1.1080 51 1 -4.3220 2.9886 -0.5003 52 1 0.0745 3.1102 0.3299 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058267198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = 8.074150 kcal Electronic energy + Delta-G solvation = -32677.035847 eV Core-core repulsion = 28450.313048 eV Total energy + Delta-G solvation = -4226.722799 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.58762 -39.25221 -38.62731 -36.93852 -35.79827 -34.41258 -32.78117 -31.89295 -31.42710 -30.93140 -29.46053 -28.02487 -27.52782 -27.31860 -25.05117 -24.08931 -22.97219 -22.51552 -21.31822 -19.67174 -18.92261 -17.95693 -17.79239 -16.86466 -16.37437 -16.30394 -16.06883 -15.90935 -15.66898 -15.23737 -14.86996 -14.63461 -14.16212 -14.14282 -14.00573 -13.54495 -13.30635 -13.09804 -12.99277 -12.91363 -12.72107 -12.49487 -12.38088 -12.10032 -12.01419 -11.87897 -11.72732 -11.59227 -11.51895 -11.38709 -11.33530 -11.29168 -11.16460 -10.98877 -10.80282 -10.69133 -10.57419 -10.39503 -10.29572 -10.21962 -9.21937 -8.76467 -8.56941 -8.30661 -8.18383 -8.08152 -6.54247 -3.92142 1.21605 1.36582 3.10122 3.11105 3.23958 3.28412 3.52939 3.61313 3.78354 3.93743 3.95426 4.14409 4.55995 4.64965 4.79610 4.86471 4.88592 4.90437 4.93228 5.03747 5.07954 5.17702 5.20479 5.22179 5.24351 5.35735 5.38233 5.47599 5.49341 5.59106 5.62846 5.69694 5.73283 5.81521 5.92818 5.97157 5.98496 6.05251 6.12344 6.20841 6.22789 6.32064 6.34455 6.35325 6.46756 6.53201 6.57758 6.65298 7.21739 7.21984 7.28784 7.48060 7.89831 8.29489 8.67395 9.01656 9.22407 9.76637 10.52193 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.002274 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.027327 B =12310.353612 C =12762.891697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 N -0.530 5.530 4 C 0.076 3.924 5 C -0.129 4.129 6 C 0.454 3.546 7 O -0.579 6.579 8 N -0.443 5.443 9 C -0.317 4.317 10 H 0.112 0.888 11 C 0.033 3.967 12 N -0.870 5.870 13 Si 0.920 3.080 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.268 1.268 17 C 0.214 3.786 18 C 0.243 3.757 19 N -0.473 5.473 20 C 0.118 3.882 21 H 0.097 0.903 22 C -0.186 4.186 23 C -0.024 4.024 24 C -0.161 4.161 25 C -0.085 4.085 26 C -0.216 4.216 27 C 0.121 3.879 28 O -0.316 6.316 29 C 0.029 3.971 30 C -0.119 4.119 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.273 0.727 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.098 0.902 50 H 0.052 0.948 51 H 0.053 0.947 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.693 6.705 -14.023 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 N -0.253 5.253 4 C -0.051 4.051 5 C -0.169 4.169 6 C 0.242 3.758 7 O -0.462 6.462 8 N -0.163 5.163 9 C -0.444 4.444 10 H 0.129 0.871 11 C -0.171 4.171 12 N -0.508 5.508 13 Si 0.747 3.253 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.193 1.193 17 C 0.086 3.914 18 C -0.075 4.075 19 N -0.153 5.153 20 C 0.010 3.990 21 H 0.114 0.886 22 C -0.244 4.244 23 C -0.025 4.025 24 C -0.179 4.179 25 C -0.103 4.103 26 C -0.234 4.234 27 C 0.076 3.924 28 O -0.230 6.230 29 C -0.066 4.066 30 C -0.138 4.138 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.152 0.848 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.116 0.884 50 H 0.071 0.929 51 H 0.071 0.929 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.712 5.422 -13.696 23.814 hybrid contribution 0.948 0.021 -0.004 0.949 sum -17.763 5.443 -13.700 23.084 Atomic orbital electron populations 1.22024 0.95118 1.00971 1.02647 1.22243 0.96071 0.89030 1.01402 1.62176 1.21526 1.18484 1.23110 1.21772 0.86553 1.02476 0.94306 1.21533 0.96140 1.02894 0.96362 1.20051 0.90054 0.83584 0.82067 1.90534 1.48652 1.52803 1.54259 1.43721 1.07485 1.60179 1.04881 1.19746 0.86431 1.41786 0.96403 0.87078 1.25199 0.99256 0.95163 0.97462 1.70042 1.42541 1.24136 1.14124 0.86002 0.80800 0.79283 0.79260 1.20141 1.21230 1.19273 1.18954 0.90843 0.82383 0.99197 1.29491 0.90737 0.95688 0.91590 1.80898 1.11337 1.12942 1.10087 1.20584 0.92035 0.98276 0.88117 0.88555 1.22514 1.01761 1.00476 0.99652 1.19548 0.94875 0.95344 0.92734 1.21036 0.95403 1.04018 0.97457 1.20822 0.93730 0.97422 0.98364 1.21171 1.00674 1.07368 0.94234 1.19062 0.91287 0.94340 0.87694 1.86100 1.21839 1.76371 1.38678 1.23013 0.80440 1.00755 1.02417 1.20313 0.90285 1.02113 1.01092 0.92216 0.93338 0.91742 0.93791 0.90836 0.94022 0.89920 0.89176 0.90644 0.91678 0.84792 0.89564 0.91628 0.91848 0.91780 0.85804 0.86235 0.86037 0.88379 0.92897 0.92852 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.52 37.15 0.32 -1.42 16 2 C 0.04 0.50 5.22 -3.83 -0.02 0.48 16 3 N -0.53 -6.70 3.82 -228.04 -0.87 -7.57 16 4 C 0.08 1.17 3.89 -3.83 -0.01 1.15 16 5 C -0.13 -2.17 4.32 -27.88 -0.12 -2.29 16 6 C 0.45 10.03 7.56 -10.99 -0.08 9.95 16 7 O -0.58 -14.73 15.54 5.54 0.09 -14.65 16 8 N -0.44 -10.22 2.60 -117.94 -0.31 -10.53 16 9 C -0.32 -8.13 9.39 -14.94 -0.14 -8.27 16 10 H 0.11 3.05 7.34 -52.49 -0.39 2.66 16 11 C 0.03 0.81 4.79 -17.47 -0.08 0.73 16 12 N -0.87 -21.70 9.71 55.50 0.54 -21.16 16 13 Si 0.92 19.44 29.64 -169.99 -5.04 14.40 16 14 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 17 C 0.21 4.23 4.92 -6.83 -0.03 4.19 16 18 C 0.24 5.33 13.42 -20.77 -0.28 5.05 16 19 N -0.47 -11.12 18.54 42.14 0.78 -10.34 16 20 C 0.12 1.31 2.66 -68.86 -0.18 1.13 16 21 H 0.10 1.08 7.70 -51.93 -0.40 0.68 16 22 C -0.19 -1.85 6.78 37.16 0.25 -1.60 16 23 C -0.02 -0.26 3.21 -104.65 -0.34 -0.60 16 24 C -0.16 -1.52 8.25 -39.56 -0.33 -1.85 16 25 C -0.09 -0.75 10.04 -39.61 -0.40 -1.15 16 26 C -0.22 -2.01 9.04 -39.43 -0.36 -2.36 16 27 C 0.12 1.33 6.69 -39.21 -0.26 1.07 16 28 O -0.32 -3.41 10.50 -19.43 -0.20 -3.62 16 29 C 0.03 0.19 9.81 101.05 0.99 1.18 16 30 C -0.12 -1.38 7.31 -39.43 -0.29 -1.67 16 31 H 0.06 0.68 5.06 -51.93 -0.26 0.42 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.80 7.51 -51.93 -0.39 0.41 16 34 H 0.04 0.53 5.43 -51.93 -0.28 0.25 16 35 H 0.07 1.01 6.35 -51.93 -0.33 0.68 16 36 H 0.04 0.69 7.31 -51.93 -0.38 0.31 16 37 H 0.08 1.31 7.55 -51.93 -0.39 0.92 16 38 H 0.09 1.34 7.42 -51.93 -0.39 0.96 16 39 H 0.08 1.28 6.05 -51.93 -0.31 0.97 16 40 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 41 H 0.13 2.75 6.02 -51.93 -0.31 2.44 16 42 H 0.09 1.32 6.69 -51.93 -0.35 0.97 16 43 H 0.06 0.64 6.14 -51.93 -0.32 0.32 16 44 H 0.06 0.54 7.43 -51.93 -0.39 0.15 16 45 H 0.06 0.72 7.09 -51.93 -0.37 0.35 16 46 H 0.12 1.01 6.11 -52.49 -0.32 0.69 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.88 6.30 -52.49 -0.33 0.55 16 49 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.05 0.29 7.65 -51.93 -0.40 -0.10 16 51 H 0.05 0.30 7.67 -51.93 -0.40 -0.09 16 52 H 0.14 1.75 7.86 -52.48 -0.41 1.33 16 LS Contribution 406.83 15.07 6.13 6.13 Total: -1.00 -30.59 406.83 -7.76 -38.36 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.52 Total: 5.25 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.37 Total: 3.72 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.14 Total: -49.60 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.12 Total: -18.26 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.04 Total: 14.40 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.59 -7.76 -38.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058267198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.431 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds