Wall clock time and date at job start Tue Mar 31 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47423 * 2 1 4 4 C 1.46899 * 111.00016 * 295.86770 * 3 2 1 5 5 C 1.53001 * 109.46963 * 295.18995 * 4 3 2 6 6 C 1.50699 * 109.47205 * 183.19193 * 5 4 3 7 7 O 1.21296 * 120.00023 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00286 * 180.02562 * 6 5 4 9 9 C 1.37095 * 120.00333 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99993 * 18.97619 * 9 8 6 11 11 C 1.38949 * 119.99941 * 198.98660 * 9 8 6 12 12 N 1.31409 * 119.99972 * 14.93231 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 194.93314 * 11 9 8 14 14 H 1.48495 * 109.47076 * 359.97438 * 13 11 9 15 15 H 1.48509 * 109.47100 * 120.00019 * 13 11 9 16 16 H 1.48502 * 109.47022 * 239.99702 * 13 11 9 17 17 C 1.46500 * 119.99568 * 359.97438 * 8 6 5 18 18 C 1.47197 * 109.47255 * 84.75944 * 17 8 6 19 19 N 5.34204 * 93.94895 * 253.11230 * 2 1 3 20 20 C 1.46903 * 111.00034 * 59.81815 * 3 2 1 21 21 H 1.09001 * 109.46815 * 296.05099 * 20 3 2 22 22 C 1.52997 * 109.47384 * 176.04919 * 20 3 2 23 23 C 1.50704 * 109.47124 * 56.04626 * 20 3 2 24 24 C 1.38287 * 119.96981 * 40.02186 * 23 20 3 25 25 C 1.38235 * 120.11126 * 179.97438 * 24 23 20 26 26 C 1.38169 * 120.05880 * 359.97438 * 25 24 23 27 27 C 1.38712 * 119.93985 * 359.77005 * 26 25 24 28 28 O 1.35899 * 120.05958 * 180.25430 * 27 26 25 29 29 C 1.42907 * 116.99680 * 0.25193 * 28 27 26 30 30 C 1.38118 * 119.97376 * 220.00231 * 23 20 3 31 31 H 1.08997 * 109.46993 * 185.32249 * 1 2 3 32 32 H 1.09007 * 109.46774 * 305.31775 * 1 2 3 33 33 H 1.08998 * 109.47019 * 65.31780 * 1 2 3 34 34 H 1.09004 * 109.47151 * 239.99989 * 2 1 3 35 35 H 1.09000 * 109.47488 * 120.00261 * 2 1 3 36 36 H 1.08994 * 109.47306 * 55.18992 * 4 3 2 37 37 H 1.09003 * 109.47408 * 175.19229 * 4 3 2 38 38 H 1.08999 * 109.47379 * 303.18682 * 5 4 3 39 39 H 1.09001 * 109.47507 * 63.18958 * 5 4 3 40 40 H 0.97007 * 120.00081 * 180.02562 * 12 11 9 41 41 H 1.09006 * 109.46917 * 204.76244 * 17 8 6 42 42 H 1.08998 * 109.47245 * 324.75538 * 17 8 6 43 43 H 1.08996 * 109.47177 * 180.02562 * 22 20 3 44 44 H 1.09001 * 109.47291 * 299.99888 * 22 20 3 45 45 H 1.08994 * 109.47366 * 59.99879 * 22 20 3 46 46 H 1.08002 * 119.94163 * 359.95948 * 24 23 20 47 47 H 1.08004 * 119.97398 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.03418 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.46763 * 179.97438 * 29 28 27 50 50 H 1.08997 * 109.47107 * 300.00287 * 29 28 27 51 51 H 1.09006 * 109.46682 * 60.00169 * 29 28 27 52 52 H 1.08005 * 120.02862 * 0.02709 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6311 2.0807 -1.2340 5 6 2.3220 1.4223 -2.4299 6 6 1.9857 2.1838 -3.6861 7 8 1.2641 3.1571 -3.6305 8 7 2.4860 1.7828 -4.8716 9 6 2.1805 2.4758 -6.0143 10 1 1.8106 3.4884 -5.9492 11 6 2.3467 1.8755 -7.2563 12 7 2.5092 0.5742 -7.3406 13 14 2.3392 2.9181 -8.8062 14 1 2.1400 4.3440 -8.4426 15 1 3.6361 2.7635 -9.5132 16 1 1.2351 2.4756 -9.6952 17 6 3.3572 0.6069 -4.9388 18 6 2.5333 -0.6096 -5.0291 19 7 1.8979 -1.5482 -5.0995 20 6 1.5452 2.1111 1.1855 21 1 0.4583 2.1867 1.1543 22 6 2.1538 3.5148 1.2013 23 6 1.9617 1.3690 2.4293 24 6 3.2146 0.7881 2.5002 25 6 3.5998 0.1072 3.6399 26 6 2.7336 0.0057 4.7115 27 6 1.4783 0.5921 4.6449 28 8 0.6263 0.4982 5.6995 29 6 1.0912 -0.2146 6.8475 30 6 1.0918 1.2699 3.4975 31 1 -0.3633 -1.0232 0.0953 32 1 -0.3633 0.5942 0.8386 33 1 -0.3633 0.4291 -0.9338 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.5502 2.0202 -1.3603 37 1 1.9316 3.1267 -1.1715 38 1 3.4011 1.4324 -2.2769 39 1 1.9783 0.3924 -2.5263 40 1 2.6256 0.1550 -8.2077 41 1 3.9970 0.6785 -5.8184 42 1 3.9757 0.5612 -4.0425 43 1 1.8020 4.0534 2.0812 44 1 3.2407 3.4393 1.2325 45 1 1.8526 4.0516 0.3018 46 1 3.8932 0.8665 1.6637 47 1 4.5791 -0.3453 3.6930 48 1 3.0352 -0.5260 5.6019 49 1 0.3162 -0.2139 7.6140 50 1 1.3249 -1.2417 6.5674 51 1 1.9873 0.2687 7.2370 52 1 0.1133 1.7237 3.4416 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058267201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:25 Heat of formation + Delta-G solvation = 1.771167 kcal Electronic energy + Delta-G solvation = -32457.854875 eV Core-core repulsion = 28230.858758 eV Total energy + Delta-G solvation = -4226.996117 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.53443 -39.32453 -38.58581 -37.00033 -35.75534 -34.32773 -32.99345 -31.91392 -31.20355 -30.83085 -29.42844 -27.95946 -27.50770 -27.34421 -25.23674 -23.70274 -23.53704 -22.57926 -21.40713 -19.63103 -18.75994 -17.87971 -17.74571 -16.84699 -16.43051 -16.26499 -16.17432 -16.00176 -15.63846 -15.21804 -14.95117 -14.65706 -14.32783 -14.04838 -13.71590 -13.71127 -13.45033 -13.01397 -12.95499 -12.84211 -12.67978 -12.58455 -12.35413 -12.18503 -12.04837 -11.95085 -11.63636 -11.61106 -11.55508 -11.37605 -11.30802 -11.25095 -11.15892 -11.08304 -10.88435 -10.57502 -10.54153 -10.37154 -10.28897 -10.17091 -9.26703 -8.97666 -8.58054 -8.31113 -8.17538 -8.02992 -6.47325 -4.01603 1.15140 1.33637 2.99875 3.09607 3.22295 3.28067 3.56687 3.60939 3.80273 3.96816 4.02990 4.15663 4.52683 4.59450 4.80627 4.81342 4.84827 4.91823 4.95010 5.05815 5.12109 5.16463 5.18841 5.27922 5.30615 5.35735 5.40805 5.43332 5.50535 5.54640 5.57892 5.71504 5.75414 5.80863 5.87562 5.96931 6.02677 6.04321 6.12955 6.18660 6.21228 6.30008 6.35182 6.42307 6.44450 6.56638 6.60772 6.61544 7.17635 7.21094 7.22335 7.47059 7.92337 8.29620 8.78344 9.01713 9.21104 9.75221 10.57960 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002054 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.477453 B =13627.553804 C =14117.218456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.043 3.957 3 N -0.528 5.528 4 C 0.069 3.931 5 C -0.131 4.131 6 C 0.459 3.541 7 O -0.576 6.576 8 N -0.446 5.446 9 C -0.306 4.306 10 H 0.107 0.893 11 C 0.028 3.972 12 N -0.886 5.886 13 Si 0.930 3.070 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.283 1.283 17 C 0.222 3.778 18 C 0.250 3.750 19 N -0.479 5.479 20 C 0.118 3.882 21 H 0.054 0.946 22 C -0.144 4.144 23 C -0.031 4.031 24 C -0.128 4.128 25 C -0.086 4.086 26 C -0.213 4.213 27 C 0.122 3.878 28 O -0.321 6.321 29 C 0.029 3.971 30 C -0.149 4.149 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.272 0.728 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.136 0.864 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.098 0.902 50 H 0.054 0.946 51 H 0.054 0.946 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -1.267 23.535 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.084 4.084 3 N -0.252 5.252 4 C -0.059 4.059 5 C -0.171 4.171 6 C 0.247 3.753 7 O -0.459 6.459 8 N -0.167 5.167 9 C -0.434 4.434 10 H 0.125 0.875 11 C -0.174 4.174 12 N -0.526 5.526 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.209 1.209 17 C 0.094 3.906 18 C -0.068 4.068 19 N -0.159 5.159 20 C 0.009 3.991 21 H 0.072 0.928 22 C -0.202 4.202 23 C -0.032 4.032 24 C -0.146 4.146 25 C -0.104 4.104 26 C -0.232 4.232 27 C 0.077 3.923 28 O -0.234 6.234 29 C -0.066 4.066 30 C -0.168 4.168 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.148 0.852 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.154 0.846 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.116 0.884 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.421 -2.203 23.322 23.674 hybrid contribution -0.535 0.282 -0.862 1.053 sum 2.886 -1.921 22.460 22.726 Atomic orbital electron populations 1.22400 0.98407 1.02174 1.02161 1.22244 0.93016 0.90293 1.02883 1.62294 1.59251 1.02112 1.01568 1.21876 0.98425 0.98600 0.86963 1.21562 1.02325 0.99976 0.93278 1.20149 0.83000 0.87351 0.84757 1.90539 1.39552 1.29407 1.86434 1.43628 1.42263 1.24089 1.06680 1.19781 1.43265 0.98223 0.82097 0.87487 1.25301 0.96945 0.95625 0.99542 1.69774 1.48534 1.08268 1.26039 0.85790 0.77802 0.79997 0.80712 1.19167 1.20508 1.20935 1.18777 0.90168 0.78081 1.03551 1.29304 0.93841 0.93702 0.89943 1.80875 1.08983 1.13623 1.12413 1.20527 0.97721 0.93345 0.87461 0.92807 1.21908 1.01974 0.94141 1.02144 1.19571 0.93612 0.96079 0.93916 1.21040 0.96517 0.98806 0.98261 1.20972 0.98901 0.97757 0.92742 1.21195 0.94624 1.06259 1.01107 1.18920 0.89243 0.96294 0.87830 1.86063 1.41524 1.72160 1.23671 1.23023 1.01199 0.95871 0.86536 1.20247 1.01051 1.03626 0.91860 0.92372 0.92590 0.92111 0.90283 0.90601 0.93823 0.89410 0.89181 0.90490 0.91706 0.85171 0.90006 0.92330 0.91457 0.91315 0.84624 0.85905 0.85915 0.88402 0.92733 0.92752 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 9.24 37.16 0.34 -2.10 16 2 C 0.04 0.54 5.41 -3.82 -0.02 0.52 16 3 N -0.53 -6.62 3.93 -228.04 -0.90 -7.52 16 4 C 0.07 1.05 3.87 -3.82 -0.01 1.03 16 5 C -0.13 -2.17 4.12 -27.88 -0.11 -2.28 16 6 C 0.46 10.07 7.57 -10.99 -0.08 9.98 16 7 O -0.58 -14.59 15.62 5.54 0.09 -14.50 16 8 N -0.45 -10.21 2.60 -117.93 -0.31 -10.52 16 9 C -0.31 -7.80 9.34 -14.93 -0.14 -7.94 16 10 H 0.11 2.88 7.37 -52.49 -0.39 2.50 16 11 C 0.03 0.70 5.03 -17.47 -0.09 0.61 16 12 N -0.89 -22.20 9.12 55.50 0.51 -21.69 16 13 Si 0.93 19.72 29.58 -169.99 -5.03 14.70 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.22 4.34 4.91 -6.83 -0.03 4.30 16 18 C 0.25 5.48 12.95 -20.77 -0.27 5.21 16 19 N -0.48 -11.31 18.53 42.14 0.78 -10.53 16 20 C 0.12 1.35 1.77 -68.86 -0.12 1.23 16 21 H 0.05 0.65 6.26 -51.93 -0.33 0.32 16 22 C -0.14 -1.55 8.96 37.16 0.33 -1.22 16 23 C -0.03 -0.34 3.78 -104.65 -0.40 -0.74 16 24 C -0.13 -1.32 8.06 -39.56 -0.32 -1.64 16 25 C -0.09 -0.79 10.04 -39.61 -0.40 -1.19 16 26 C -0.21 -1.98 9.04 -39.43 -0.36 -2.34 16 27 C 0.12 1.30 6.69 -39.22 -0.26 1.04 16 28 O -0.32 -3.26 10.50 -19.42 -0.20 -3.46 16 29 C 0.03 0.17 9.81 101.05 0.99 1.17 16 30 C -0.15 -1.65 9.61 -39.43 -0.38 -2.02 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 6.21 -51.93 -0.32 0.35 16 33 H 0.06 0.87 6.67 -51.93 -0.35 0.53 16 34 H 0.08 1.04 6.31 -51.93 -0.33 0.71 16 35 H 0.08 0.90 6.12 -51.93 -0.32 0.58 16 36 H 0.04 0.74 6.30 -51.93 -0.33 0.41 16 37 H 0.09 1.38 5.75 -51.93 -0.30 1.08 16 38 H 0.09 1.30 7.41 -51.93 -0.38 0.91 16 39 H 0.08 1.29 5.99 -51.93 -0.31 0.98 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.13 2.64 6.38 -51.93 -0.33 2.31 16 42 H 0.08 1.22 6.66 -51.93 -0.35 0.88 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.80 6.22 -51.93 -0.32 0.47 16 46 H 0.14 1.40 7.71 -52.49 -0.40 1.00 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 48 H 0.12 0.88 6.30 -52.49 -0.33 0.55 16 49 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 51 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 52 H 0.13 1.33 8.04 -52.48 -0.42 0.91 16 LS Contribution 411.35 15.07 6.20 6.20 Total: -1.00 -30.70 411.35 -7.74 -38.44 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.55 Total: 5.29 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.33 Total: 3.60 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.09 Total: -50.26 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.12 Total: -17.96 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.70 -7.74 -38.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058267201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.207 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds