Wall clock time and date at job start Tue Mar 31 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47423 * 2 1 4 4 C 1.46899 * 111.00016 * 295.86770 * 3 2 1 5 5 C 1.53001 * 109.46963 * 295.18995 * 4 3 2 6 6 C 1.50699 * 109.47205 * 183.19193 * 5 4 3 7 7 O 1.21296 * 120.00023 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00286 * 180.02562 * 6 5 4 9 9 C 1.37095 * 120.00333 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99993 * 18.97619 * 9 8 6 11 11 C 1.38949 * 119.99941 * 198.98660 * 9 8 6 12 12 N 1.31409 * 119.99972 * 14.93231 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 194.93314 * 11 9 8 14 14 H 1.48495 * 109.47076 * 359.97438 * 13 11 9 15 15 H 1.48509 * 109.47100 * 120.00019 * 13 11 9 16 16 H 1.48502 * 109.47022 * 239.99702 * 13 11 9 17 17 C 1.46500 * 119.99568 * 359.97438 * 8 6 5 18 18 C 1.47197 * 109.47255 * 84.75944 * 17 8 6 19 19 N 5.34204 * 93.94895 * 253.11230 * 2 1 3 20 20 C 1.46903 * 111.00034 * 59.81815 * 3 2 1 21 21 H 1.09001 * 109.46815 * 296.05099 * 20 3 2 22 22 C 1.52997 * 109.47384 * 176.04919 * 20 3 2 23 23 C 1.50704 * 109.47124 * 56.04626 * 20 3 2 24 24 C 1.38287 * 119.96981 * 40.02186 * 23 20 3 25 25 C 1.38235 * 120.11126 * 179.97438 * 24 23 20 26 26 C 1.38169 * 120.05880 * 359.97438 * 25 24 23 27 27 C 1.38712 * 119.93985 * 359.77005 * 26 25 24 28 28 O 1.35899 * 120.05958 * 180.25430 * 27 26 25 29 29 C 1.42907 * 116.99680 * 0.25193 * 28 27 26 30 30 C 1.38118 * 119.97376 * 220.00231 * 23 20 3 31 31 H 1.08997 * 109.46993 * 185.32249 * 1 2 3 32 32 H 1.09007 * 109.46774 * 305.31775 * 1 2 3 33 33 H 1.08998 * 109.47019 * 65.31780 * 1 2 3 34 34 H 1.09004 * 109.47151 * 239.99989 * 2 1 3 35 35 H 1.09000 * 109.47488 * 120.00261 * 2 1 3 36 36 H 1.08994 * 109.47306 * 55.18992 * 4 3 2 37 37 H 1.09003 * 109.47408 * 175.19229 * 4 3 2 38 38 H 1.08999 * 109.47379 * 303.18682 * 5 4 3 39 39 H 1.09001 * 109.47507 * 63.18958 * 5 4 3 40 40 H 0.97007 * 120.00081 * 180.02562 * 12 11 9 41 41 H 1.09006 * 109.46917 * 204.76244 * 17 8 6 42 42 H 1.08998 * 109.47245 * 324.75538 * 17 8 6 43 43 H 1.08996 * 109.47177 * 180.02562 * 22 20 3 44 44 H 1.09001 * 109.47291 * 299.99888 * 22 20 3 45 45 H 1.08994 * 109.47366 * 59.99879 * 22 20 3 46 46 H 1.08002 * 119.94163 * 359.95948 * 24 23 20 47 47 H 1.08004 * 119.97398 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.03418 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.46763 * 179.97438 * 29 28 27 50 50 H 1.08997 * 109.47107 * 300.00287 * 29 28 27 51 51 H 1.09006 * 109.46682 * 60.00169 * 29 28 27 52 52 H 1.08005 * 120.02862 * 0.02709 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6311 2.0807 -1.2340 5 6 2.3220 1.4223 -2.4299 6 6 1.9857 2.1838 -3.6861 7 8 1.2641 3.1571 -3.6305 8 7 2.4860 1.7828 -4.8716 9 6 2.1805 2.4758 -6.0143 10 1 1.8106 3.4884 -5.9492 11 6 2.3467 1.8755 -7.2563 12 7 2.5092 0.5742 -7.3406 13 14 2.3392 2.9181 -8.8062 14 1 2.1400 4.3440 -8.4426 15 1 3.6361 2.7635 -9.5132 16 1 1.2351 2.4756 -9.6952 17 6 3.3572 0.6069 -4.9388 18 6 2.5333 -0.6096 -5.0291 19 7 1.8979 -1.5482 -5.0995 20 6 1.5452 2.1111 1.1855 21 1 0.4583 2.1867 1.1543 22 6 2.1538 3.5148 1.2013 23 6 1.9617 1.3690 2.4293 24 6 3.2146 0.7881 2.5002 25 6 3.5998 0.1072 3.6399 26 6 2.7336 0.0057 4.7115 27 6 1.4783 0.5921 4.6449 28 8 0.6263 0.4982 5.6995 29 6 1.0912 -0.2146 6.8475 30 6 1.0918 1.2699 3.4975 31 1 -0.3633 -1.0232 0.0953 32 1 -0.3633 0.5942 0.8386 33 1 -0.3633 0.4291 -0.9338 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.5502 2.0202 -1.3603 37 1 1.9316 3.1267 -1.1715 38 1 3.4011 1.4324 -2.2769 39 1 1.9783 0.3924 -2.5263 40 1 2.6256 0.1550 -8.2077 41 1 3.9970 0.6785 -5.8184 42 1 3.9757 0.5612 -4.0425 43 1 1.8020 4.0534 2.0812 44 1 3.2407 3.4393 1.2325 45 1 1.8526 4.0516 0.3018 46 1 3.8932 0.8665 1.6637 47 1 4.5791 -0.3453 3.6930 48 1 3.0352 -0.5260 5.6019 49 1 0.3162 -0.2139 7.6140 50 1 1.3249 -1.2417 6.5674 51 1 1.9873 0.2687 7.2370 52 1 0.1133 1.7237 3.4416 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058267201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:23 Heat of formation + Delta-G solvation = -15.330841 kcal Electronic energy + Delta-G solvation = -32458.596474 eV Core-core repulsion = 28230.858758 eV Total energy + Delta-G solvation = -4227.737716 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.34282 -40.70429 -39.76940 -37.91176 -37.49190 -36.13975 -34.04757 -33.63470 -32.44261 -31.61279 -30.34215 -29.21046 -28.83542 -28.06086 -26.85108 -24.99663 -24.47791 -23.35393 -22.42923 -20.79458 -20.15301 -19.68465 -18.58427 -18.23112 -17.92557 -17.42835 -17.00526 -16.70882 -16.62319 -16.53682 -16.04586 -15.98679 -15.72107 -15.54903 -15.00136 -14.68430 -14.45699 -14.36739 -14.10397 -13.96911 -13.94512 -13.65571 -13.56007 -13.38445 -13.23260 -13.13225 -13.03381 -12.90676 -12.80460 -12.74973 -12.42562 -12.36724 -12.31736 -12.25228 -12.07795 -12.00725 -11.94945 -11.74551 -11.49662 -11.31678 -11.11165 -10.38870 -9.89102 -9.74242 -9.26135 -9.05196 -8.36131 -5.96411 0.39623 0.57929 1.39129 1.47950 1.59881 1.85929 2.09006 2.30553 2.35932 2.39173 2.74761 2.93314 3.05073 3.31898 3.66224 3.70976 3.93308 3.98208 4.05226 4.13437 4.21522 4.26992 4.28262 4.33784 4.37324 4.41270 4.46270 4.54415 4.56992 4.57816 4.62322 4.69476 4.73276 4.74962 4.77565 4.94505 4.98435 5.00353 5.05689 5.09299 5.13297 5.17741 5.31934 5.37492 5.40151 5.49572 5.59758 5.72539 5.88499 6.06227 6.11018 6.19525 6.43374 6.51557 7.05484 7.15159 7.39128 7.95743 8.66418 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002054 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.477453 B =13627.553804 C =14117.218456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.046 3.954 3 N -0.516 5.516 4 C 0.079 3.921 5 C -0.117 4.117 6 C 0.453 3.547 7 O -0.618 6.618 8 N -0.458 5.458 9 C -0.332 4.332 10 H 0.082 0.918 11 C 0.000 4.000 12 N -0.899 5.899 13 Si 0.988 3.012 14 H -0.272 1.272 15 H -0.263 1.263 16 H -0.291 1.291 17 C 0.223 3.777 18 C 0.262 3.738 19 N -0.513 5.513 20 C 0.119 3.881 21 H 0.045 0.955 22 C -0.140 4.140 23 C -0.036 4.036 24 C -0.135 4.135 25 C -0.083 4.083 26 C -0.212 4.212 27 C 0.112 3.888 28 O -0.341 6.341 29 C 0.020 3.980 30 C -0.165 4.165 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.020 0.980 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.273 0.727 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.137 0.863 47 H 0.147 0.853 48 H 0.146 0.854 49 H 0.115 0.885 50 H 0.063 0.937 51 H 0.065 0.935 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -2.178 25.159 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.082 4.082 3 N -0.240 5.240 4 C -0.049 4.049 5 C -0.157 4.157 6 C 0.243 3.757 7 O -0.503 6.503 8 N -0.179 5.179 9 C -0.459 4.459 10 H 0.100 0.900 11 C -0.201 4.201 12 N -0.539 5.539 13 Si 0.812 3.188 14 H -0.196 1.196 15 H -0.188 1.188 16 H -0.217 1.217 17 C 0.096 3.904 18 C -0.056 4.056 19 N -0.194 5.194 20 C 0.011 3.989 21 H 0.062 0.938 22 C -0.198 4.198 23 C -0.036 4.036 24 C -0.154 4.154 25 C -0.101 4.101 26 C -0.231 4.231 27 C 0.067 3.933 28 O -0.256 6.256 29 C -0.074 4.074 30 C -0.184 4.184 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.155 0.845 47 H 0.165 0.835 48 H 0.163 0.837 49 H 0.133 0.867 50 H 0.082 0.918 51 H 0.084 0.916 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.377 -3.138 24.965 25.729 hybrid contribution -1.187 0.558 -1.263 1.821 sum 4.189 -2.580 23.702 24.207 Atomic orbital electron populations 1.22356 0.98839 1.02483 1.01057 1.22250 0.92589 0.90111 1.03205 1.62295 1.58812 1.02062 1.00802 1.21676 0.96866 0.98555 0.87841 1.21487 1.04381 0.98978 0.90828 1.21049 0.81830 0.86829 0.85966 1.90512 1.41220 1.31366 1.87237 1.43803 1.42938 1.24776 1.06338 1.19672 1.44655 0.97881 0.83724 0.90028 1.25894 0.96228 0.96521 1.01410 1.69863 1.48558 1.08978 1.26521 0.84945 0.78012 0.78304 0.77490 1.19610 1.18812 1.21732 1.19086 0.89430 0.75850 1.05988 1.29764 0.93279 0.93668 0.88851 1.80877 1.09929 1.14883 1.13707 1.20523 0.97242 0.93773 0.87374 0.93754 1.21869 1.02175 0.93696 1.02012 1.19441 0.94112 0.96647 0.93420 1.21117 0.96165 0.99164 0.98920 1.21261 0.99838 0.96977 0.92059 1.21476 0.93921 1.05701 1.01970 1.19076 0.89924 0.96388 0.87911 1.86037 1.42224 1.72813 1.24499 1.23306 1.02417 0.96074 0.85637 1.20308 1.01093 1.04457 0.92560 0.91601 0.92302 0.94321 0.90641 0.89423 0.96142 0.89953 0.85909 0.90175 0.91691 0.85633 0.84612 0.91353 0.90997 0.92495 0.84502 0.83504 0.83654 0.86692 0.91820 0.91629 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.77 9.24 71.98 0.66 -4.10 16 2 C 0.05 1.09 5.41 86.30 0.47 1.56 16 3 N -0.52 -12.42 3.93 -875.37 -3.44 -15.86 16 4 C 0.08 2.38 3.87 86.30 0.33 2.72 16 5 C -0.12 -3.72 4.12 29.85 0.12 -3.60 16 6 C 0.45 19.90 7.57 87.66 0.66 20.56 16 7 O -0.62 -32.14 15.62 -3.08 -0.05 -32.19 16 8 N -0.46 -20.89 2.60 -645.42 -1.68 -22.57 16 9 C -0.33 -17.11 9.34 84.04 0.79 -16.33 16 10 H 0.08 4.56 7.37 -2.91 -0.02 4.53 16 11 C 0.00 0.02 5.03 84.93 0.43 0.45 16 12 N -0.90 -44.62 9.12 21.66 0.20 -44.43 16 13 Si 0.99 40.42 29.58 68.60 2.03 42.45 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 17 C 0.22 8.36 4.91 84.57 0.42 8.78 16 18 C 0.26 11.19 12.95 89.45 1.16 12.35 16 19 N -0.51 -23.94 18.53 20.00 0.37 -23.57 16 20 C 0.12 2.67 1.77 44.17 0.08 2.74 16 21 H 0.04 1.09 6.26 -2.39 -0.01 1.07 16 22 C -0.14 -2.95 8.96 71.98 0.64 -2.30 16 23 C -0.04 -0.74 3.78 -19.88 -0.08 -0.81 16 24 C -0.14 -2.51 8.06 22.28 0.18 -2.33 16 25 C -0.08 -1.31 10.04 22.25 0.22 -1.08 16 26 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 27 C 0.11 2.23 6.69 22.51 0.15 2.38 16 28 O -0.34 -6.52 10.50 -92.42 -0.97 -7.49 16 29 C 0.02 0.20 9.81 113.37 1.11 1.31 16 30 C -0.16 -3.55 9.61 22.36 0.21 -3.34 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.43 6.21 -2.38 -0.01 1.42 16 33 H 0.04 1.14 6.67 -2.39 -0.02 1.12 16 34 H 0.08 1.86 6.31 -2.38 -0.02 1.85 16 35 H 0.09 1.92 6.12 -2.39 -0.01 1.90 16 36 H 0.02 0.71 6.30 -2.39 -0.02 0.70 16 37 H 0.08 2.61 5.75 -2.39 -0.01 2.59 16 38 H 0.12 3.13 7.41 -2.39 -0.02 3.12 16 39 H 0.08 2.57 5.99 -2.39 -0.01 2.55 16 40 H 0.27 13.12 8.31 -92.70 -0.77 12.35 16 41 H 0.13 4.91 6.38 -2.38 -0.02 4.90 16 42 H 0.14 3.58 6.66 -2.39 -0.02 3.57 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.32 6.22 -2.39 -0.01 1.31 16 46 H 0.14 2.49 7.71 -2.91 -0.02 2.47 16 47 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 48 H 0.15 1.59 6.30 -2.91 -0.02 1.57 16 49 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.06 0.51 7.65 -2.39 -0.02 0.50 16 51 H 0.07 0.50 7.67 -2.38 -0.02 0.48 16 52 H 0.12 2.60 8.04 -2.91 -0.02 2.57 16 Total: -1.00 -67.47 411.35 5.18 -62.29 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.95 Total: 25.61 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.77 Total: 15.75 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -4.55 Total: -106.42 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.02 Total: -39.68 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -67.47 5.18 -62.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058267201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.962 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds