Wall clock time and date at job start Tue Mar 31 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86795 * 119.99590 * 2 1 4 4 H 1.48504 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47050 * 299.99689 * 3 2 1 6 6 H 1.48501 * 109.47273 * 59.99707 * 3 2 1 7 7 C 1.39060 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00097 * 171.19518 * 7 2 1 9 9 N 1.36852 * 119.99647 * 351.20481 * 7 2 1 10 10 C 1.46510 * 119.99717 * 132.84943 * 9 7 2 11 11 C 1.50697 * 109.46775 * 320.00428 * 10 9 7 12 12 C 1.38233 * 120.00228 * 273.12853 * 11 10 9 13 13 C 1.38232 * 120.00234 * 179.77177 * 12 11 10 14 14 C 1.38235 * 119.99678 * 0.50638 * 13 12 11 15 15 C 1.38228 * 120.00318 * 359.74702 * 14 13 12 16 16 C 1.38232 * 120.00058 * 93.41046 * 11 10 9 17 17 C 1.34774 * 120.00268 * 312.84589 * 9 7 2 18 18 O 1.21614 * 119.99870 * 6.53706 * 17 9 7 19 19 C 1.47564 * 120.00042 * 186.53680 * 17 9 7 20 20 C 1.40171 * 120.86376 * 129.28338 * 19 17 9 21 21 N 1.31924 * 119.00949 * 179.97438 * 20 19 17 22 22 C 1.32732 * 120.90215 * 0.02562 * 21 20 19 23 23 C 1.48167 * 119.04950 * 179.97438 * 22 21 20 24 24 C 1.39458 * 120.12613 * 359.97438 * 23 22 21 25 25 C 1.37988 * 119.86059 * 180.02562 * 24 23 22 26 26 C 1.38339 * 120.13506 * 359.97438 * 25 24 23 27 27 C 1.38345 * 120.27004 * 0.02562 * 26 25 24 28 28 C 1.37987 * 120.13100 * 0.02562 * 27 26 25 29 29 N 1.32748 * 121.91191 * 0.25578 * 22 21 20 30 30 C 1.31926 * 120.89521 * 359.47381 * 29 22 21 31 31 H 0.96992 * 120.00524 * 5.01942 * 1 2 3 32 32 H 1.08996 * 109.46934 * 80.00417 * 10 9 7 33 33 H 1.08995 * 109.46632 * 200.00388 * 10 9 7 34 34 H 1.08004 * 119.99936 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.99875 * 180.22740 * 13 12 11 36 36 H 1.08003 * 119.99562 * 179.72266 * 14 13 12 37 37 H 1.08000 * 120.00326 * 179.97438 * 15 14 13 38 38 H 1.08006 * 120.00005 * 359.97438 * 16 11 10 39 39 H 1.07998 * 120.49594 * 359.96184 * 20 19 17 40 40 H 1.08000 * 120.07132 * 0.04837 * 24 23 22 41 41 H 1.08002 * 119.92955 * 180.25573 * 25 24 23 42 42 H 1.08000 * 119.86754 * 179.97438 * 26 25 24 43 43 H 1.07999 * 119.93871 * 179.97438 * 27 26 25 44 44 H 1.07995 * 120.06904 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.49342 * 180.27924 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7075 1.3465 0.0006 5 1 1.8886 2.3964 -1.2125 6 1 1.8886 2.3965 1.2125 7 6 2.0090 -1.2042 0.0005 8 1 3.0794 -1.2097 -0.1426 9 7 1.3368 -2.3824 0.1823 10 6 1.5968 -3.5185 -0.7055 11 6 1.7560 -3.0243 -2.1202 12 6 0.6444 -2.8663 -2.9264 13 6 0.7900 -2.4085 -4.2226 14 6 2.0484 -2.1186 -4.7159 15 6 3.1606 -2.2816 -3.9114 16 6 3.0144 -2.7345 -2.6135 17 6 0.4358 -2.4976 1.1779 18 8 0.1323 -1.5230 1.8391 19 6 -0.1825 -3.8061 1.4658 20 6 -0.2011 -4.3216 2.7691 21 7 -0.7640 -5.4949 2.9851 22 6 -1.3068 -6.1843 1.9892 23 6 -1.9276 -7.4982 2.2781 24 6 -1.9370 -7.9967 3.5806 25 6 -2.5162 -9.2212 3.8434 26 6 -3.0873 -9.9537 2.8182 27 6 -3.0811 -9.4645 1.5242 28 6 -2.5040 -8.2418 1.2487 29 7 -1.3047 -5.7333 0.7407 30 6 -0.7663 -4.5663 0.4429 31 1 -0.4850 0.8367 -0.0735 32 1 2.5106 -4.0230 -0.3918 33 1 0.7611 -4.2165 -0.6563 34 1 -0.3383 -3.0974 -2.5426 35 1 -0.0789 -2.2815 -4.8513 36 1 2.1626 -1.7652 -5.7300 37 1 4.1438 -2.0555 -4.2969 38 1 3.8834 -2.8619 -1.9849 39 1 0.2391 -3.7665 3.5843 40 1 -1.4922 -7.4253 4.3819 41 1 -2.5278 -9.6064 4.8524 42 1 -3.5391 -10.9118 3.0288 43 1 -3.5281 -10.0411 0.7279 44 1 -2.4993 -7.8611 0.2381 45 1 -0.7722 -4.2036 -0.5743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:22 Heat of formation + Delta-G solvation = 100.512774 kcal Electronic energy + Delta-G solvation = -30681.872126 eV Core-core repulsion = 26630.633592 eV Total energy + Delta-G solvation = -4051.238534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.91357 -39.18049 -38.73255 -37.77427 -34.59880 -33.55925 -33.05749 -32.03213 -30.96307 -30.52746 -30.39135 -29.79266 -26.11736 -25.41183 -24.44826 -23.89985 -22.25252 -22.03751 -21.77079 -20.77384 -19.90607 -17.83680 -17.50115 -16.85414 -16.48483 -16.16294 -15.79277 -15.20822 -15.00602 -14.67484 -14.60898 -14.51418 -14.43591 -13.88820 -13.54758 -13.48195 -13.28651 -13.22811 -12.94306 -12.85621 -12.72687 -12.35885 -12.04493 -11.57860 -11.46172 -11.32051 -11.13359 -11.05975 -11.00451 -10.82515 -10.64231 -10.48239 -10.38805 -10.22017 -9.75069 -9.02343 -9.00366 -8.88745 -8.53709 -8.37701 -8.27669 -8.06656 -7.21979 -6.16572 -3.99928 0.45325 1.32600 1.36047 1.65368 1.88196 1.94351 3.24312 3.31487 3.34033 3.55574 3.86450 3.98784 4.14293 4.24390 4.32878 4.39092 4.75439 4.87172 4.89733 4.94328 5.03050 5.16378 5.25333 5.31439 5.34951 5.42518 5.44941 5.47573 5.54378 5.58271 5.74771 5.78282 5.86686 5.95781 5.99079 6.08794 6.14494 6.20702 6.30881 6.41084 6.49570 6.54649 6.55707 6.61458 6.86220 6.94907 6.96995 7.16869 7.20022 7.51213 7.52610 8.14735 8.23492 8.89380 8.96793 9.46684 10.08071 10.88598 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.002910 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.402970 B = 9620.344204 C =11278.431260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.331 4.331 8 H 0.081 0.919 9 N -0.436 5.436 10 C 0.123 3.877 11 C -0.053 4.053 12 C -0.096 4.096 13 C -0.124 4.124 14 C -0.130 4.130 15 C -0.128 4.128 16 C -0.093 4.093 17 C 0.506 3.494 18 O -0.503 6.503 19 C -0.189 4.189 20 C 0.178 3.822 21 N -0.511 5.511 22 C 0.336 3.664 23 C -0.037 4.037 24 C -0.074 4.074 25 C -0.132 4.132 26 C -0.107 4.107 27 C -0.132 4.132 28 C -0.074 4.074 29 N -0.511 5.511 30 C 0.160 3.840 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.174 0.826 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 -14.980 -1.974 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.458 4.458 8 H 0.099 0.901 9 N -0.158 5.158 10 C 0.000 4.000 11 C -0.054 4.054 12 C -0.114 4.114 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.146 4.146 16 C -0.112 4.112 17 C 0.292 3.708 18 O -0.379 6.379 19 C -0.197 4.197 20 C 0.011 3.989 21 N -0.224 5.224 22 C 0.073 3.927 23 C -0.039 4.039 24 C -0.094 4.094 25 C -0.151 4.151 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.094 4.094 29 N -0.224 5.224 30 C -0.007 4.007 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.191 0.809 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.253 -15.176 -1.354 15.402 hybrid contribution 0.703 1.930 -0.398 2.092 sum -1.550 -13.246 -1.753 13.451 Atomic orbital electron populations 1.69857 1.06279 1.27281 1.41367 1.25337 0.94974 0.99243 0.94893 0.86170 0.79839 0.82747 0.77631 1.19440 1.20975 1.20686 1.18949 0.91369 0.82073 1.53413 0.90129 1.43146 1.38224 1.10825 1.23588 1.20931 1.00603 0.90946 0.87564 1.19755 0.93191 0.97898 0.94547 1.20872 0.97902 0.99016 0.93635 1.20972 0.96968 1.00349 0.95925 1.20963 0.92983 1.01471 0.99405 1.20988 0.98185 1.00863 0.94528 1.20918 0.96944 0.98397 0.94945 1.17468 0.84493 0.85628 0.83251 1.90706 1.60557 1.36891 1.49740 1.22572 1.01381 0.99592 0.96200 1.23229 0.90832 0.89465 0.95374 1.68258 1.10857 1.07868 1.35377 1.21222 0.92862 0.93861 0.84804 1.18119 1.00479 0.91061 0.94196 1.21360 0.96795 0.95200 0.96051 1.21096 0.99541 0.95020 0.99394 1.21290 0.98606 0.99606 0.93114 1.21100 1.00810 0.96207 0.96918 1.21361 0.94916 0.93552 0.99543 1.68246 1.18210 1.14861 1.21122 1.23509 0.89253 0.88181 0.99786 0.92641 0.92952 0.90810 0.86949 0.86865 0.87036 0.86861 0.86591 0.80894 0.84560 0.85723 0.86055 0.85703 0.84525 0.80744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.02 11.08 55.50 0.62 -22.40 16 2 C 0.07 1.79 4.70 -17.45 -0.08 1.71 16 3 Si 0.91 21.08 29.57 -169.99 -5.03 16.05 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.33 -8.42 7.84 -15.01 -0.12 -8.54 16 8 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 9 N -0.44 -10.08 2.80 -117.27 -0.33 -10.41 16 10 C 0.12 2.29 5.73 -5.19 -0.03 2.26 16 11 C -0.05 -0.97 4.47 -104.63 -0.47 -1.44 16 12 C -0.10 -1.68 9.71 -39.59 -0.38 -2.07 16 13 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 14 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 15 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 16 C -0.09 -1.58 9.27 -39.58 -0.37 -1.95 16 17 C 0.51 12.15 6.64 -12.46 -0.08 12.06 16 18 O -0.50 -14.23 14.36 5.27 0.08 -14.16 16 19 C -0.19 -3.75 5.25 -104.64 -0.55 -4.30 16 20 C 0.18 3.22 11.05 -16.79 -0.19 3.04 16 21 N -0.51 -8.78 9.42 -10.81 -0.10 -8.89 16 22 C 0.34 5.64 7.55 -156.76 -1.18 4.46 16 23 C -0.04 -0.52 5.88 -104.91 -0.62 -1.14 16 24 C -0.07 -0.93 9.56 -39.22 -0.38 -1.30 16 25 C -0.13 -1.32 10.03 -39.64 -0.40 -1.72 16 26 C -0.11 -0.99 10.04 -39.50 -0.40 -1.39 16 27 C -0.13 -1.32 10.03 -39.63 -0.40 -1.72 16 28 C -0.07 -0.92 9.56 -39.22 -0.38 -1.29 16 29 N -0.51 -8.70 9.42 -10.81 -0.10 -8.80 16 30 C 0.16 2.84 8.91 -16.79 -0.15 2.69 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.07 1.27 3.26 -51.93 -0.17 1.10 16 34 H 0.11 1.91 7.68 -52.48 -0.40 1.51 16 35 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 36 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.17 2.88 8.06 -52.49 -0.42 2.46 16 40 H 0.14 1.68 7.50 -52.49 -0.39 1.29 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.14 1.67 7.50 -52.49 -0.39 1.28 16 45 H 0.18 2.92 6.17 -52.49 -0.32 2.60 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -31.97 385.12 -11.45 -43.42 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.03 Total: 7.06 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -7.35 Total: -7.68 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.08 Total: -50.50 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.97 -11.45 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.932 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds