Wall clock time and date at job start Tue Mar 31 2020 05:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86795 * 119.99590 * 2 1 4 4 H 1.48504 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47050 * 299.99689 * 3 2 1 6 6 H 1.48501 * 109.47273 * 59.99707 * 3 2 1 7 7 C 1.39060 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00097 * 171.19518 * 7 2 1 9 9 N 1.36852 * 119.99647 * 351.20481 * 7 2 1 10 10 C 1.46510 * 119.99717 * 132.84943 * 9 7 2 11 11 C 1.50697 * 109.46775 * 320.00428 * 10 9 7 12 12 C 1.38233 * 120.00228 * 273.12853 * 11 10 9 13 13 C 1.38232 * 120.00234 * 179.77177 * 12 11 10 14 14 C 1.38235 * 119.99678 * 0.50638 * 13 12 11 15 15 C 1.38228 * 120.00318 * 359.74702 * 14 13 12 16 16 C 1.38232 * 120.00058 * 93.41046 * 11 10 9 17 17 C 1.34774 * 120.00268 * 312.84589 * 9 7 2 18 18 O 1.21614 * 119.99870 * 6.53706 * 17 9 7 19 19 C 1.47564 * 120.00042 * 186.53680 * 17 9 7 20 20 C 1.40171 * 120.86376 * 129.28338 * 19 17 9 21 21 N 1.31924 * 119.00949 * 179.97438 * 20 19 17 22 22 C 1.32732 * 120.90215 * 0.02562 * 21 20 19 23 23 C 1.48167 * 119.04950 * 179.97438 * 22 21 20 24 24 C 1.39458 * 120.12613 * 359.97438 * 23 22 21 25 25 C 1.37988 * 119.86059 * 180.02562 * 24 23 22 26 26 C 1.38339 * 120.13506 * 359.97438 * 25 24 23 27 27 C 1.38345 * 120.27004 * 0.02562 * 26 25 24 28 28 C 1.37987 * 120.13100 * 0.02562 * 27 26 25 29 29 N 1.32748 * 121.91191 * 0.25578 * 22 21 20 30 30 C 1.31926 * 120.89521 * 359.47381 * 29 22 21 31 31 H 0.96992 * 120.00524 * 5.01942 * 1 2 3 32 32 H 1.08996 * 109.46934 * 80.00417 * 10 9 7 33 33 H 1.08995 * 109.46632 * 200.00388 * 10 9 7 34 34 H 1.08004 * 119.99936 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.99875 * 180.22740 * 13 12 11 36 36 H 1.08003 * 119.99562 * 179.72266 * 14 13 12 37 37 H 1.08000 * 120.00326 * 179.97438 * 15 14 13 38 38 H 1.08006 * 120.00005 * 359.97438 * 16 11 10 39 39 H 1.07998 * 120.49594 * 359.96184 * 20 19 17 40 40 H 1.08000 * 120.07132 * 0.04837 * 24 23 22 41 41 H 1.08002 * 119.92955 * 180.25573 * 25 24 23 42 42 H 1.08000 * 119.86754 * 179.97438 * 26 25 24 43 43 H 1.07999 * 119.93871 * 179.97438 * 27 26 25 44 44 H 1.07995 * 120.06904 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.49342 * 180.27924 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7075 1.3465 0.0006 5 1 1.8886 2.3964 -1.2125 6 1 1.8886 2.3965 1.2125 7 6 2.0090 -1.2042 0.0005 8 1 3.0794 -1.2097 -0.1426 9 7 1.3368 -2.3824 0.1823 10 6 1.5968 -3.5185 -0.7055 11 6 1.7560 -3.0243 -2.1202 12 6 0.6444 -2.8663 -2.9264 13 6 0.7900 -2.4085 -4.2226 14 6 2.0484 -2.1186 -4.7159 15 6 3.1606 -2.2816 -3.9114 16 6 3.0144 -2.7345 -2.6135 17 6 0.4358 -2.4976 1.1779 18 8 0.1323 -1.5230 1.8391 19 6 -0.1825 -3.8061 1.4658 20 6 -0.2011 -4.3216 2.7691 21 7 -0.7640 -5.4949 2.9851 22 6 -1.3068 -6.1843 1.9892 23 6 -1.9276 -7.4982 2.2781 24 6 -1.9370 -7.9967 3.5806 25 6 -2.5162 -9.2212 3.8434 26 6 -3.0873 -9.9537 2.8182 27 6 -3.0811 -9.4645 1.5242 28 6 -2.5040 -8.2418 1.2487 29 7 -1.3047 -5.7333 0.7407 30 6 -0.7663 -4.5663 0.4429 31 1 -0.4850 0.8367 -0.0735 32 1 2.5106 -4.0230 -0.3918 33 1 0.7611 -4.2165 -0.6563 34 1 -0.3383 -3.0974 -2.5426 35 1 -0.0789 -2.2815 -4.8513 36 1 2.1626 -1.7652 -5.7300 37 1 4.1438 -2.0555 -4.2969 38 1 3.8834 -2.8619 -1.9849 39 1 0.2391 -3.7665 3.5843 40 1 -1.4922 -7.4253 4.3819 41 1 -2.5278 -9.6064 4.8524 42 1 -3.5391 -10.9118 3.0288 43 1 -3.5281 -10.0411 0.7279 44 1 -2.4993 -7.8611 0.2381 45 1 -0.7722 -4.2036 -0.5743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:21 Heat of formation + Delta-G solvation = 84.849580 kcal Electronic energy + Delta-G solvation = -30682.551333 eV Core-core repulsion = 26630.633592 eV Total energy + Delta-G solvation = -4051.917741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.32788 -40.55702 -39.77108 -39.31571 -36.34375 -35.01028 -34.53435 -33.62507 -31.97023 -31.82243 -31.64266 -31.06232 -27.77259 -26.86223 -25.82238 -25.43540 -23.35618 -23.11247 -22.89559 -22.10196 -21.62737 -19.13526 -18.93186 -18.42172 -18.00507 -17.29897 -17.11487 -16.88669 -16.28604 -16.07020 -15.92912 -15.71813 -15.62906 -15.48483 -15.00977 -14.78104 -14.63056 -14.47202 -14.23691 -14.10513 -13.79201 -13.68943 -13.46036 -13.13508 -13.04432 -12.87517 -12.66610 -12.64159 -12.20317 -12.10971 -12.00381 -11.96514 -11.82252 -11.66703 -11.04881 -10.84829 -10.43146 -10.22503 -9.85072 -9.64041 -9.49026 -9.48325 -9.09851 -8.14480 -6.00770 -0.80964 -0.11220 0.51526 0.55432 0.61171 0.67728 1.38077 1.42807 1.50989 2.16812 2.34554 2.58820 2.62337 2.85178 2.94530 3.04337 3.13940 3.30628 3.42936 3.81401 3.98409 4.00133 4.06508 4.09464 4.16946 4.19608 4.28136 4.34030 4.37644 4.38548 4.56017 4.58688 4.63752 4.78081 4.81765 4.89630 4.95304 5.12172 5.18479 5.24259 5.29527 5.49939 5.52811 5.57562 5.62033 5.69944 5.73196 5.75590 5.88752 6.05659 6.19813 6.28383 6.83790 6.98767 7.08977 7.57243 8.22142 8.90812 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.002910 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.402970 B = 9620.344204 C =11278.431260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.021 3.979 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.294 1.294 7 C -0.335 4.335 8 H 0.083 0.917 9 N -0.444 5.444 10 C 0.125 3.875 11 C -0.075 4.075 12 C -0.117 4.117 13 C -0.131 4.131 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.108 4.108 17 C 0.505 3.495 18 O -0.557 6.557 19 C -0.215 4.215 20 C 0.185 3.815 21 N -0.514 5.514 22 C 0.343 3.657 23 C -0.073 4.073 24 C -0.083 4.083 25 C -0.131 4.131 26 C -0.093 4.093 27 C -0.131 4.131 28 C -0.082 4.082 29 N -0.513 5.513 30 C 0.172 3.828 31 H 0.256 0.744 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.182 0.818 40 H 0.130 0.870 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.131 0.869 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -17.789 -2.912 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.221 1.221 7 C -0.463 4.463 8 H 0.101 0.899 9 N -0.164 5.164 10 C 0.003 3.997 11 C -0.076 4.076 12 C -0.135 4.135 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.126 4.126 17 C 0.291 3.709 18 O -0.437 6.437 19 C -0.223 4.223 20 C 0.018 3.982 21 N -0.227 5.227 22 C 0.080 3.920 23 C -0.075 4.075 24 C -0.103 4.103 25 C -0.149 4.149 26 C -0.112 4.112 27 C -0.148 4.148 28 C -0.102 4.102 29 N -0.226 5.226 30 C 0.005 3.995 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.199 0.801 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.176 0.824 43 H 0.171 0.829 44 H 0.149 0.851 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.247 -18.028 -2.322 18.315 hybrid contribution 0.634 2.489 -0.075 2.569 sum -1.612 -15.540 -2.397 15.806 Atomic orbital electron populations 1.69993 1.07638 1.27140 1.43999 1.26049 0.95529 1.02134 0.94937 0.85355 0.79586 0.79368 0.76970 1.17801 1.20411 1.22114 1.19105 0.91563 0.82987 1.52606 0.89942 1.43308 1.37556 1.11411 1.24167 1.21018 1.01481 0.89674 0.87570 1.19782 0.94174 0.99483 0.94166 1.21006 0.97592 1.00158 0.94786 1.21293 0.98508 0.99712 0.95422 1.21384 0.92284 1.00127 1.00814 1.21367 0.99849 0.99647 0.93770 1.21114 0.96581 0.98825 0.96110 1.17932 0.83992 0.86349 0.82579 1.90656 1.62418 1.39099 1.51533 1.22167 1.04017 0.98549 0.97560 1.23376 0.90149 0.89713 0.94963 1.68384 1.11401 1.07481 1.35426 1.21953 0.91072 0.94540 0.84449 1.18256 1.02943 0.90564 0.95777 1.21455 0.97349 0.96390 0.95118 1.21453 0.98358 0.93837 1.01210 1.21773 0.96627 1.00485 0.92267 1.21460 0.99794 0.95198 0.98378 1.21459 0.95275 0.94580 0.98903 1.68372 1.18487 1.14308 1.21423 1.23541 0.88267 0.88087 0.99598 0.93498 0.91856 0.89716 0.87575 0.84805 0.83779 0.83947 0.86066 0.80132 0.85177 0.82898 0.82365 0.82851 0.85060 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.37 11.08 21.68 0.24 -50.13 16 2 C 0.02 1.14 4.70 84.96 0.40 1.54 16 3 Si 0.96 44.26 29.57 68.60 2.03 46.29 16 4 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 7 C -0.33 -17.51 7.84 84.11 0.66 -16.85 16 8 H 0.08 4.18 7.85 -2.91 -0.02 4.15 16 9 N -0.44 -21.30 2.80 -643.18 -1.80 -23.10 16 10 C 0.12 4.79 5.73 85.63 0.49 5.28 16 11 C -0.08 -2.78 4.47 -19.87 -0.09 -2.87 16 12 C -0.12 -4.16 9.71 22.27 0.22 -3.95 16 13 C -0.13 -4.03 10.05 22.27 0.22 -3.80 16 14 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 15 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 16 C -0.11 -3.58 9.27 22.27 0.21 -3.38 16 17 C 0.50 25.43 6.64 86.70 0.58 26.00 16 18 O -0.56 -33.30 14.36 -4.07 -0.06 -33.36 16 19 C -0.22 -8.87 5.25 -19.88 -0.10 -8.98 16 20 C 0.19 6.94 11.05 85.15 0.94 7.88 16 21 N -0.51 -17.97 9.42 -188.10 -1.77 -19.74 16 22 C 0.34 11.58 7.55 137.40 1.04 12.61 16 23 C -0.07 -2.04 5.88 -20.05 -0.12 -2.16 16 24 C -0.08 -1.96 9.56 22.50 0.22 -1.74 16 25 C -0.13 -2.18 10.03 22.23 0.22 -1.95 16 26 C -0.09 -1.31 10.04 22.32 0.22 -1.08 16 27 C -0.13 -2.16 10.03 22.24 0.22 -1.94 16 28 C -0.08 -1.92 9.56 22.50 0.22 -1.71 16 29 N -0.51 -17.67 9.42 -188.10 -1.77 -19.44 16 30 C 0.17 6.33 8.91 85.15 0.76 7.09 16 31 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.06 2.25 8.06 -2.39 -0.02 2.23 16 33 H 0.09 3.01 3.26 -2.39 -0.01 3.01 16 34 H 0.11 3.77 7.68 -2.91 -0.02 3.75 16 35 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.18 6.32 8.06 -2.91 -0.02 6.30 16 40 H 0.13 3.14 7.50 -2.91 -0.02 3.11 16 41 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.13 3.12 7.50 -2.91 -0.02 3.10 16 45 H 0.18 6.31 6.17 -2.91 -0.02 6.30 16 Total: -1.00 -72.61 385.12 4.64 -67.97 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 1.03 Total: 28.25 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.75 Total: 3.26 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -5.10 Total: -112.41 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.06 Total: -33.36 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.61 4.64 -67.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.817 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds