Wall clock time and date at job start Tue Mar 31 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47351 * 22.06579 * 3 2 1 5 5 N 1.46501 * 109.47354 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00108 * 270.00648 * 5 4 3 7 7 C 1.50709 * 109.47021 * 269.99660 * 6 5 4 8 8 H 1.08004 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00105 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00072 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47099 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47218 * 119.99722 * 11 9 7 14 14 H 1.48497 * 109.47223 * 240.00107 * 11 9 7 15 15 C 1.34773 * 119.99514 * 89.99672 * 5 4 3 16 16 O 1.21282 * 119.99746 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00297 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.46862 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.46865 * 179.97438 * 18 17 15 20 20 N 1.30929 * 126.40102 * 90.29534 * 19 18 17 21 21 C 1.35387 * 105.57706 * 180.08934 * 20 19 18 22 22 C 1.47733 * 126.44912 * 179.90787 * 21 20 19 23 23 C 1.34859 * 125.27058 * 179.72491 * 22 21 20 24 24 C 1.37823 * 114.72111 * 179.97438 * 23 22 21 25 25 C 1.33721 * 115.07590 * 0.02562 * 24 23 22 26 26 S 1.75869 * 109.74156 * 359.97438 * 25 24 23 27 27 N 1.31035 * 107.10128 * 359.64008 * 21 20 19 28 28 O 1.21288 * 110.04513 * 0.22561 * 27 21 20 29 29 H 1.09000 * 109.47315 * 262.06750 * 3 2 1 30 30 H 1.09003 * 109.47323 * 142.06684 * 3 2 1 31 31 H 1.09005 * 109.46783 * 60.00301 * 4 3 2 32 32 H 1.08995 * 109.47266 * 300.00325 * 4 3 2 33 33 H 1.08993 * 109.47595 * 29.99442 * 6 5 4 34 34 H 1.08997 * 109.47129 * 149.99939 * 6 5 4 35 35 H 0.96994 * 119.99753 * 179.97438 * 10 9 7 36 36 H 1.08992 * 109.47247 * 59.99394 * 17 15 5 37 37 H 1.09000 * 109.46838 * 299.98990 * 17 15 5 38 38 H 1.09001 * 109.47137 * 60.00159 * 18 17 15 39 39 H 1.09004 * 109.47398 * 299.99550 * 18 17 15 40 40 H 1.07995 * 122.63982 * 359.97438 * 23 22 21 41 41 H 1.07999 * 122.45997 * 179.97438 * 24 23 22 42 42 H 1.07993 * 125.13021 * 180.26195 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3360 -0.5419 5 7 4.5837 -1.3351 -0.5425 6 6 5.3154 -0.8581 -1.7185 7 6 5.5670 -2.0114 -2.6555 8 1 5.2171 -3.0007 -2.4001 9 6 6.2446 -1.8036 -3.8381 10 7 6.6711 -0.5989 -4.1487 11 14 6.5571 -3.2333 -4.9991 12 1 5.9810 -4.4745 -4.4222 13 1 5.9193 -2.9542 -6.3109 14 1 8.0197 -3.4078 -5.1869 15 6 5.2581 -1.7729 0.5391 16 8 6.4709 -1.7727 0.5385 17 6 4.5053 -2.2640 1.7488 18 6 5.5002 -2.7005 2.8260 19 6 4.7474 -3.1910 4.0360 20 7 4.3641 -4.4215 4.2664 21 6 3.7281 -4.3864 5.4611 22 6 3.1085 -5.5314 6.1595 23 6 2.4845 -5.4702 7.3535 24 6 1.9840 -6.6725 7.8045 25 6 2.1931 -7.7139 6.9922 26 16 3.0702 -7.1854 5.5624 27 7 3.7705 -3.1469 5.8840 28 8 4.3515 -2.4521 5.0773 29 1 2.9713 0.1426 1.0178 30 1 2.9710 0.8114 -0.6318 31 1 2.7554 -1.4779 -1.5598 32 1 2.7557 -2.1466 0.0898 33 1 4.7257 -0.0970 -2.2294 34 1 6.2676 -0.4303 -1.4051 35 1 7.1482 -0.4529 -4.9805 36 1 3.8794 -3.1109 1.4681 37 1 3.8781 -1.4614 2.1369 38 1 6.1265 -1.8537 3.1068 39 1 6.1272 -3.5032 2.4378 40 1 2.3848 -4.5514 7.9122 41 1 1.4620 -6.7667 8.7453 42 1 1.8680 -8.7259 7.1830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:27 Heat of formation + Delta-G solvation = 91.770699 kcal Electronic energy + Delta-G solvation = -27898.203338 eV Core-core repulsion = 23780.770665 eV Total energy + Delta-G solvation = -4117.432673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.76009 -39.50102 -38.30064 -36.94115 -36.16279 -35.40644 -34.55971 -32.94271 -31.58665 -30.90020 -29.79324 -27.75019 -25.68366 -25.43273 -24.08161 -23.75787 -22.72310 -21.83976 -19.32741 -18.78856 -18.67656 -18.18709 -17.65490 -17.01683 -16.62999 -16.51676 -15.98500 -15.65418 -15.38351 -14.80545 -14.53097 -14.27667 -14.17762 -13.77987 -13.74455 -13.45873 -13.14108 -12.90226 -12.87283 -12.71297 -12.51834 -12.47256 -12.23248 -12.11280 -11.98167 -11.77974 -11.44383 -11.35664 -11.28657 -11.11558 -11.00355 -10.85645 -10.68722 -10.49329 -10.23455 -9.74155 -9.18236 -8.96961 -8.91130 -8.51335 -7.93993 -6.12949 -4.17609 0.09443 1.00471 1.05132 1.54834 1.89563 2.53055 2.56299 2.69569 2.78640 3.14273 3.16388 3.26055 3.34667 3.37874 3.57855 3.83308 4.14469 4.38486 4.56318 4.62523 4.71394 4.86484 4.92039 4.97180 5.04490 5.10090 5.11820 5.22523 5.29197 5.35120 5.44154 5.54882 5.61081 5.72304 5.78339 5.82934 5.85837 5.93412 6.03098 6.84808 7.28450 7.35555 7.54746 7.82957 7.86689 8.11870 8.15267 8.73299 8.89963 9.48319 10.95206 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.002188 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.637149 B =12794.074917 C =13829.151015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.116 3.884 5 N -0.594 5.594 6 C 0.244 3.756 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.512 3.488 16 O -0.531 6.531 17 C -0.144 4.144 18 C -0.015 4.015 19 C 0.202 3.798 20 N -0.475 5.475 21 C 0.236 3.764 22 C -0.132 4.132 23 C -0.093 4.093 24 C -0.140 4.140 25 C -0.211 4.211 26 S 0.191 5.809 27 N -0.371 5.371 28 O 0.085 5.915 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -7.802 21.185 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.011 4.011 5 N -0.325 5.325 6 C 0.125 3.875 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.298 3.702 16 O -0.407 6.407 17 C -0.185 4.185 18 C -0.054 4.054 19 C -0.019 4.019 20 N -0.208 5.208 21 C -0.034 4.034 22 C -0.251 4.251 23 C -0.128 4.128 24 C -0.170 4.170 25 C -0.349 4.349 26 S 0.456 5.544 27 N -0.078 5.078 28 O 0.023 5.977 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.619 -8.599 20.362 23.724 hybrid contribution 0.031 0.060 0.450 0.455 sum -8.588 -8.539 20.811 24.079 Atomic orbital electron populations 1.81213 1.13081 1.08685 1.09179 1.29101 0.95117 0.93128 0.92892 1.19902 0.81365 1.02752 1.05198 1.21337 0.82117 0.94069 1.03551 1.48192 1.04908 1.62749 1.16648 1.19390 0.92660 0.95056 0.80369 1.21441 1.36734 0.95167 1.03414 0.92267 1.24916 0.95294 0.95857 0.97927 1.69924 1.38248 1.20603 1.24404 0.86467 0.78122 0.82473 0.80516 1.19753 1.21003 1.20876 1.19997 0.87967 0.78564 0.83629 1.90721 1.13568 1.54459 1.81991 1.21773 0.99006 1.03346 0.94392 1.20100 0.95714 1.04622 0.84947 1.28915 0.95345 0.84920 0.92676 1.72122 1.15414 1.19885 1.13392 1.22701 0.99238 0.91041 0.90446 1.21308 1.09292 0.95016 0.99493 1.20353 0.97904 1.00074 0.94446 1.20033 1.03644 0.91338 1.02005 1.26090 1.06072 1.03820 0.98879 1.84588 1.52557 0.97628 1.19611 1.75017 1.15186 1.04071 1.13556 1.85300 1.51928 1.36615 1.23813 0.87526 0.86370 0.88617 0.90574 0.94624 0.93379 0.92691 0.88227 0.88615 0.86697 0.85907 0.83543 0.83536 0.81099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.44 18.54 42.15 0.78 -5.66 16 2 C 0.22 2.51 15.43 -20.76 -0.32 2.19 16 3 C -0.05 -0.48 6.03 -29.51 -0.18 -0.66 16 4 C 0.12 1.41 5.17 -4.04 -0.02 1.39 16 5 N -0.59 -9.88 2.46 -175.06 -0.43 -10.31 16 6 C 0.24 5.44 5.16 -5.19 -0.03 5.41 16 7 C -0.53 -13.55 9.39 -34.44 -0.32 -13.88 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 11 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.51 8.19 7.67 -10.98 -0.08 8.11 16 16 O -0.53 -10.80 15.56 5.56 0.09 -10.72 16 17 C -0.14 -1.54 4.23 -27.88 -0.12 -1.66 16 18 C -0.01 -0.15 5.13 -27.88 -0.14 -0.29 16 19 C 0.20 2.28 7.74 -12.97 -0.10 2.18 16 20 N -0.48 -6.19 11.58 -9.88 -0.11 -6.30 16 21 C 0.24 3.05 8.02 -156.05 -1.25 1.79 16 22 C -0.13 -1.47 6.44 -36.90 -0.24 -1.71 16 23 C -0.09 -0.85 10.05 -40.93 -0.41 -1.27 16 24 C -0.14 -1.00 10.16 -41.32 -0.42 -1.42 16 25 C -0.21 -1.44 11.23 29.15 0.33 -1.11 16 26 S 0.19 1.76 23.32 -107.50 -2.51 -0.75 16 27 N -0.37 -4.78 12.16 30.98 0.38 -4.41 16 28 O 0.08 0.99 11.29 18.01 0.20 1.19 16 29 H 0.11 0.77 7.22 -51.93 -0.38 0.40 16 30 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.27 8.07 -51.93 -0.42 0.86 16 32 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 33 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.10 1.01 7.40 -51.93 -0.38 0.63 16 37 H 0.10 0.77 7.19 -51.93 -0.37 0.39 16 38 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.12 1.37 8.10 -51.93 -0.42 0.95 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -33.42 392.81 -8.14 -41.56 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.77 Total: -2.84 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -3.41 Total: 0.65 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 1.35 Total: -50.74 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.29 Total: -9.52 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.75 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.42 -8.14 -41.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.332 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds