Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47351 * 22.06579 * 3 2 1 5 5 N 1.46501 * 109.47354 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00108 * 270.00648 * 5 4 3 7 7 C 1.50709 * 109.47021 * 269.99660 * 6 5 4 8 8 H 1.08004 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00105 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00072 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47099 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47218 * 119.99722 * 11 9 7 14 14 H 1.48497 * 109.47223 * 240.00107 * 11 9 7 15 15 C 1.34773 * 119.99514 * 89.99672 * 5 4 3 16 16 O 1.21282 * 119.99746 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00297 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.46862 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.46865 * 179.97438 * 18 17 15 20 20 N 1.30929 * 126.40102 * 90.29534 * 19 18 17 21 21 C 1.35387 * 105.57706 * 180.08934 * 20 19 18 22 22 C 1.47733 * 126.44912 * 179.90787 * 21 20 19 23 23 C 1.34859 * 125.27058 * 179.72491 * 22 21 20 24 24 C 1.37823 * 114.72111 * 179.97438 * 23 22 21 25 25 C 1.33721 * 115.07590 * 0.02562 * 24 23 22 26 26 S 1.75869 * 109.74156 * 359.97438 * 25 24 23 27 27 N 1.31035 * 107.10128 * 359.64008 * 21 20 19 28 28 O 1.21288 * 110.04513 * 0.22561 * 27 21 20 29 29 H 1.09000 * 109.47315 * 262.06750 * 3 2 1 30 30 H 1.09003 * 109.47323 * 142.06684 * 3 2 1 31 31 H 1.09005 * 109.46783 * 60.00301 * 4 3 2 32 32 H 1.08995 * 109.47266 * 300.00325 * 4 3 2 33 33 H 1.08993 * 109.47595 * 29.99442 * 6 5 4 34 34 H 1.08997 * 109.47129 * 149.99939 * 6 5 4 35 35 H 0.96994 * 119.99753 * 179.97438 * 10 9 7 36 36 H 1.08992 * 109.47247 * 59.99394 * 17 15 5 37 37 H 1.09000 * 109.46838 * 299.98990 * 17 15 5 38 38 H 1.09001 * 109.47137 * 60.00159 * 18 17 15 39 39 H 1.09004 * 109.47398 * 299.99550 * 18 17 15 40 40 H 1.07995 * 122.63982 * 359.97438 * 23 22 21 41 41 H 1.07999 * 122.45997 * 179.97438 * 24 23 22 42 42 H 1.07993 * 125.13021 * 180.26195 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3360 -0.5419 5 7 4.5837 -1.3351 -0.5425 6 6 5.3154 -0.8581 -1.7185 7 6 5.5670 -2.0114 -2.6555 8 1 5.2171 -3.0007 -2.4001 9 6 6.2446 -1.8036 -3.8381 10 7 6.6711 -0.5989 -4.1487 11 14 6.5571 -3.2333 -4.9991 12 1 5.9810 -4.4745 -4.4222 13 1 5.9193 -2.9542 -6.3109 14 1 8.0197 -3.4078 -5.1869 15 6 5.2581 -1.7729 0.5391 16 8 6.4709 -1.7727 0.5385 17 6 4.5053 -2.2640 1.7488 18 6 5.5002 -2.7005 2.8260 19 6 4.7474 -3.1910 4.0360 20 7 4.3641 -4.4215 4.2664 21 6 3.7281 -4.3864 5.4611 22 6 3.1085 -5.5314 6.1595 23 6 2.4845 -5.4702 7.3535 24 6 1.9840 -6.6725 7.8045 25 6 2.1931 -7.7139 6.9922 26 16 3.0702 -7.1854 5.5624 27 7 3.7705 -3.1469 5.8840 28 8 4.3515 -2.4521 5.0773 29 1 2.9713 0.1426 1.0178 30 1 2.9710 0.8114 -0.6318 31 1 2.7554 -1.4779 -1.5598 32 1 2.7557 -2.1466 0.0898 33 1 4.7257 -0.0970 -2.2294 34 1 6.2676 -0.4303 -1.4051 35 1 7.1482 -0.4529 -4.9805 36 1 3.8794 -3.1109 1.4681 37 1 3.8781 -1.4614 2.1369 38 1 6.1265 -1.8537 3.1068 39 1 6.1272 -3.5032 2.4378 40 1 2.3848 -4.5514 7.9122 41 1 1.4620 -6.7667 8.7453 42 1 1.8680 -8.7259 7.1830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = 70.952226 kcal Electronic energy + Delta-G solvation = -27899.106095 eV Core-core repulsion = 23780.770665 eV Total energy + Delta-G solvation = -4118.335430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.66672 -40.79576 -38.93793 -37.99804 -37.07366 -36.68325 -35.53041 -34.77789 -32.57887 -32.07487 -30.52784 -29.34356 -26.86461 -26.19055 -25.27642 -24.77320 -24.01377 -22.76302 -19.98095 -19.95356 -19.50650 -19.15333 -18.76931 -18.29435 -17.98978 -17.63190 -17.04767 -16.65212 -16.48152 -16.18593 -15.63116 -15.51255 -15.04950 -14.66119 -14.59967 -14.47364 -14.32970 -13.92039 -13.71342 -13.68239 -13.66255 -13.51607 -13.39697 -13.18508 -13.10224 -12.88931 -12.81231 -12.65704 -12.48122 -12.32852 -12.21336 -12.11953 -11.78386 -11.75698 -11.59886 -11.37813 -10.55408 -10.55055 -9.66771 -9.56829 -9.43342 -8.14597 -6.25777 -0.62186 0.15522 0.38711 0.94302 1.14168 1.41524 1.44716 1.54283 1.63019 1.71083 1.84454 1.86299 1.93297 2.28149 2.40240 2.50174 2.96240 3.15711 3.19701 3.64652 3.83346 3.96706 4.05784 4.10600 4.14335 4.17830 4.36852 4.39198 4.52536 4.58572 4.61561 4.73149 4.88171 4.92051 4.98920 5.02183 5.11407 5.18513 5.20370 5.36115 5.40823 5.65540 5.91524 6.17437 6.62866 6.77434 6.86772 6.98570 7.38015 7.54202 8.92037 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.002188 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.637149 B =12794.074917 C =13829.151015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.245 3.755 3 C -0.040 4.040 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.258 3.742 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.954 3.046 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.286 1.286 15 C 0.510 3.490 16 O -0.581 6.581 17 C -0.130 4.130 18 C -0.009 4.009 19 C 0.213 3.787 20 N -0.496 5.496 21 C 0.230 3.770 22 C -0.171 4.171 23 C -0.085 4.085 24 C -0.147 4.147 25 C -0.188 4.188 26 S 0.164 5.836 27 N -0.387 5.387 28 O 0.087 5.913 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.034 0.966 34 H 0.010 0.990 35 H 0.264 0.736 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.177 0.823 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 -9.098 22.948 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.072 4.072 3 C -0.081 4.081 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.137 3.863 7 C -0.575 4.575 8 H 0.072 0.928 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.780 3.220 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.212 1.212 15 C 0.299 3.701 16 O -0.461 6.461 17 C -0.170 4.170 18 C -0.048 4.048 19 C -0.008 4.008 20 N -0.230 5.230 21 C -0.040 4.040 22 C -0.290 4.290 23 C -0.121 4.121 24 C -0.176 4.176 25 C -0.325 4.325 26 S 0.428 5.572 27 N -0.095 5.095 28 O 0.027 5.973 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.167 0.833 41 H 0.194 0.806 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.211 -9.898 22.139 26.313 hybrid contribution 0.509 0.413 -0.020 0.656 sum -9.702 -9.485 22.119 25.949 Atomic orbital electron populations 1.81256 1.14623 1.10227 1.11041 1.29251 0.95081 0.91632 0.91265 1.19893 0.79818 1.01190 1.07153 1.21519 0.79205 0.96635 1.03890 1.48044 1.06640 1.62667 1.15313 1.18830 0.91714 0.93935 0.81789 1.21795 1.35964 0.95810 1.03910 0.92800 1.25682 0.95453 0.97990 0.99682 1.70021 1.39295 1.22262 1.24971 0.85567 0.77654 0.79882 0.78904 1.19232 1.20203 1.21168 1.20818 0.87589 0.77218 0.84475 1.90703 1.16071 1.56294 1.83022 1.21714 0.98691 1.04847 0.91768 1.20055 0.95516 1.04736 0.84475 1.28931 0.94686 0.84570 0.92567 1.72127 1.16189 1.20682 1.13968 1.23054 0.98964 0.91538 0.90412 1.21493 1.11487 0.95289 1.00736 1.20629 0.96656 1.01147 0.93644 1.20332 1.03674 0.90374 1.03178 1.26491 1.03953 1.05180 0.96906 1.84631 1.53733 0.97249 1.21575 1.74990 1.16110 1.04316 1.14077 1.85276 1.51899 1.36384 1.23753 0.84131 0.85954 0.89951 0.87680 0.94780 0.97201 0.92677 0.86925 0.84834 0.85481 0.86951 0.83264 0.80554 0.77920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.59 18.54 20.01 0.37 -13.22 16 2 C 0.24 5.14 15.43 89.44 1.38 6.52 16 3 C -0.04 -0.64 6.03 28.79 0.17 -0.46 16 4 C 0.11 2.48 5.17 86.38 0.45 2.93 16 5 N -0.60 -19.30 2.46 -826.16 -2.03 -21.33 16 6 C 0.26 11.72 5.16 85.64 0.44 12.17 16 7 C -0.54 -27.79 9.39 25.60 0.24 -27.55 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.01 0.59 5.46 84.65 0.46 1.05 16 10 N -0.93 -52.36 13.29 21.45 0.28 -52.08 16 11 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 15 C 0.51 15.79 7.67 87.66 0.67 16.46 16 16 O -0.58 -23.92 15.56 -3.04 -0.05 -23.96 16 17 C -0.13 -2.44 4.23 29.85 0.13 -2.31 16 18 C -0.01 -0.17 5.13 29.85 0.15 -0.01 16 19 C 0.21 4.54 7.74 88.35 0.68 5.22 16 20 N -0.50 -12.59 11.58 -302.29 -3.50 -16.09 16 21 C 0.23 5.82 8.02 136.96 1.10 6.92 16 22 C -0.17 -3.69 6.44 24.01 0.15 -3.53 16 23 C -0.08 -1.44 10.05 21.39 0.22 -1.22 16 24 C -0.15 -1.67 10.16 21.15 0.21 -1.45 16 25 C -0.19 -2.03 11.23 66.79 0.75 -1.28 16 26 S 0.16 2.85 23.32 -56.49 -1.32 1.53 16 27 N -0.39 -9.66 12.16 -58.80 -0.72 -10.37 16 28 O 0.09 1.93 11.29 74.50 0.84 2.77 16 29 H 0.14 1.41 7.22 -2.39 -0.02 1.39 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.08 8.07 -2.38 -0.02 2.06 16 32 H 0.11 1.75 6.44 -2.39 -0.02 1.74 16 33 H 0.03 1.54 8.07 -2.39 -0.02 1.53 16 34 H 0.01 0.52 7.42 -2.39 -0.02 0.51 16 35 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.11 1.93 7.40 -2.39 -0.02 1.91 16 37 H 0.13 1.55 7.19 -2.39 -0.02 1.53 16 38 H 0.13 2.16 8.10 -2.39 -0.02 2.14 16 39 H 0.11 2.46 8.10 -2.38 -0.02 2.44 16 40 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -75.66 392.81 4.20 -71.46 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.08 Total: 3.04 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 7.21 Total: 13.43 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -5.59 Total: -113.09 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.79 Total: -21.19 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.32 Total: 1.53 kcal Total: -75.66 4.20 -71.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.409 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds