Wall clock time and date at job start Tue Mar 31 2020 05:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47020 * 2 1 4 4 N 1.46498 * 109.46867 * 180.02562 * 3 2 1 5 5 C 1.36874 * 119.99720 * 269.99628 * 4 3 2 6 6 H 1.07996 * 120.00135 * 139.32486 * 5 4 3 7 7 C 1.39047 * 119.99916 * 319.32207 * 5 4 3 8 8 N 1.31372 * 119.99942 * 161.50690 * 7 5 4 9 9 Si 1.86800 * 120.00238 * 341.50784 * 7 5 4 10 10 H 1.48503 * 109.46989 * 95.26436 * 9 7 5 11 11 H 1.48501 * 109.47049 * 215.26514 * 9 7 5 12 12 H 1.48496 * 109.47149 * 335.26279 * 9 7 5 13 13 C 1.34773 * 120.00134 * 90.00117 * 4 3 2 14 14 O 1.21594 * 120.00309 * 3.69831 * 13 4 3 15 15 C 1.47729 * 119.99724 * 183.70118 * 13 4 3 16 16 C 1.39664 * 120.14947 * 327.79016 * 15 13 4 17 17 C 1.37915 * 119.84368 * 180.02562 * 16 15 13 18 18 C 1.38396 * 120.15378 * 0.02562 * 17 16 15 19 19 C 1.38353 * 120.30737 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.92617 * 180.02562 * 19 18 17 21 21 S 1.81001 * 109.46874 * 269.97955 * 20 19 18 22 22 C 1.76202 * 99.99707 * 180.02562 * 21 20 19 23 23 N 1.31273 * 125.80497 * 0.02562 * 22 21 20 24 24 C 1.34361 * 109.30304 * 179.97438 * 23 22 21 25 25 C 1.34380 * 108.34638 * 0.02562 * 24 23 22 26 26 N 1.36111 * 125.80191 * 179.71625 * 22 21 20 27 27 C 1.46504 * 126.50233 * 0.02562 * 26 22 21 28 28 C 1.37962 * 120.14630 * 0.02562 * 19 18 17 29 29 H 1.08999 * 109.47203 * 299.99563 * 1 2 3 30 30 H 1.08991 * 109.47478 * 59.99960 * 1 2 3 31 31 H 1.09005 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46884 * 239.99736 * 2 1 3 33 33 H 1.09003 * 109.47324 * 119.99744 * 2 1 3 34 34 H 1.08991 * 109.47090 * 60.00231 * 3 2 1 35 35 H 1.09003 * 109.46864 * 300.00026 * 3 2 1 36 36 H 0.96999 * 119.99705 * 180.02562 * 8 7 5 37 37 H 1.08001 * 120.07679 * 0.02562 * 16 15 13 38 38 H 1.08007 * 119.92272 * 180.02562 * 17 16 15 39 39 H 1.08007 * 119.84698 * 179.97438 * 18 17 16 40 40 H 1.08997 * 109.47022 * 29.97859 * 20 19 18 41 41 H 1.08999 * 109.47047 * 149.98212 * 20 19 18 42 42 H 1.08007 * 125.82213 * 180.02562 * 24 23 22 43 43 H 1.08008 * 126.51700 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.46828 * 90.00167 * 27 26 22 45 45 H 1.08998 * 109.47189 * 210.00146 * 27 26 22 46 46 H 1.09003 * 109.46863 * 330.00306 * 27 26 22 47 47 H 1.08001 * 120.07023 * 180.27785 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1898 1.4424 1.1845 6 1 5.0741 0.8328 1.2971 7 6 3.7469 2.2272 2.2434 8 7 4.1558 1.9725 3.4656 9 14 2.5706 3.6436 1.9282 10 1 1.1753 3.1878 2.1536 11 1 2.8820 4.7613 2.8550 12 1 2.7192 4.1077 0.5255 13 6 4.1784 1.4427 -1.1681 14 8 3.5719 1.5108 -2.2198 15 6 5.6533 1.3600 -1.1699 16 6 6.3892 1.9300 -0.1286 17 6 7.7659 1.8496 -0.1370 18 6 8.4185 1.2065 -1.1742 19 6 7.6958 0.6397 -2.2089 20 6 8.4152 -0.0591 -3.3338 21 16 8.7832 1.1316 -4.6464 22 6 9.5985 0.0757 -5.7975 23 7 9.8205 -1.2082 -5.6381 24 6 10.4639 -1.6850 -6.7169 25 6 10.6524 -0.6717 -7.5791 26 7 10.1000 0.4515 -7.0057 27 6 10.0627 1.7969 -7.5845 28 6 6.3181 0.7127 -2.2132 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.8465 2.5198 4.2044 37 1 5.8812 2.4326 0.6812 38 1 8.3362 2.2896 0.6678 39 1 9.4969 1.1468 -1.1760 40 1 9.3454 -0.4869 -2.9600 41 1 7.7835 -0.8538 -3.7308 42 1 10.7763 -2.7082 -6.8657 43 1 11.1398 -0.7287 -8.5413 44 1 10.9562 2.3455 -7.2865 45 1 10.0268 1.7239 -8.6715 46 1 9.1774 2.3221 -7.2262 47 1 5.7550 0.2659 -3.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058394037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:00 Heat of formation + Delta-G solvation = 62.508816 kcal Electronic energy + Delta-G solvation = -28723.055997 eV Core-core repulsion = 24805.613438 eV Total energy + Delta-G solvation = -3917.442558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.92358 -39.62366 -37.96046 -35.37683 -34.24158 -33.34667 -32.39036 -31.64813 -30.47194 -29.84066 -27.24881 -27.02931 -25.88058 -25.13809 -22.65846 -22.01543 -21.62821 -21.14274 -20.99331 -19.11706 -18.04823 -17.45803 -16.26931 -16.01562 -15.99774 -15.59449 -15.53172 -14.72126 -14.60743 -14.51196 -14.34562 -14.21468 -13.87904 -13.60274 -13.48636 -13.32227 -13.08274 -12.99309 -12.72952 -12.59387 -12.50535 -12.36566 -11.84646 -11.69336 -11.51818 -11.13537 -10.97852 -10.91351 -10.75119 -10.66897 -10.36996 -10.25316 -10.06636 -9.88261 -9.81229 -9.49933 -9.27399 -8.71316 -8.40958 -8.19331 -7.82004 -7.49980 -6.57669 -4.19160 0.97128 1.59577 1.71302 1.81841 2.33332 2.70625 2.88801 2.99172 3.15618 3.23879 3.67845 4.03217 4.21900 4.40230 4.46636 4.57921 4.78190 4.82849 4.87529 5.04528 5.05851 5.11094 5.40069 5.42510 5.51202 5.54698 5.59907 5.73083 5.76252 5.87620 5.91547 6.00914 6.05130 6.06685 6.28618 6.33449 6.40427 6.44086 6.47767 6.51116 6.68174 6.71915 6.83563 6.88233 7.03464 7.14138 7.27574 7.46981 7.71373 7.96772 8.15185 8.82267 9.22859 9.57628 10.50270 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.002304 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.411456 B =12151.395851 C =12875.976668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.456 5.456 5 C -0.348 4.348 6 H 0.112 0.888 7 C 0.067 3.933 8 N -0.854 5.854 9 Si 0.874 3.126 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.519 3.481 14 O -0.593 6.593 15 C -0.102 4.102 16 C -0.054 4.054 17 C -0.141 4.141 18 C -0.089 4.089 19 C -0.113 4.113 20 C -0.039 4.039 21 S -0.021 6.021 22 C 0.192 3.808 23 N -0.491 5.491 24 C -0.019 4.019 25 C -0.055 4.055 26 N -0.452 5.452 27 C 0.071 3.929 28 C -0.055 4.055 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.277 0.723 37 H 0.168 0.832 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.172 0.828 43 H 0.176 0.824 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.501 -0.923 -14.802 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.175 5.175 5 C -0.475 4.475 6 H 0.129 0.871 7 C -0.141 4.141 8 N -0.488 5.488 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 C 0.310 3.690 14 O -0.478 6.478 15 C -0.104 4.104 16 C -0.073 4.073 17 C -0.159 4.159 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.187 4.187 21 S 0.213 5.787 22 C -0.178 4.178 23 N -0.213 5.213 24 C -0.169 4.169 25 C -0.190 4.190 26 N -0.138 5.138 27 C -0.071 4.071 28 C -0.077 4.077 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.186 0.814 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.189 0.811 43 H 0.193 0.807 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.721 0.004 -14.570 17.515 hybrid contribution 0.059 -0.279 -0.622 0.685 sum 9.779 -0.276 -15.192 18.070 Atomic orbital electron populations 1.21707 0.96279 1.01141 1.01399 1.21766 0.94863 0.97782 1.02572 1.21679 0.82356 0.96830 1.01214 1.43585 1.04074 1.64249 1.05619 1.19202 1.13216 1.27137 0.87975 0.87068 1.25355 0.96895 0.97170 0.94662 1.69715 1.43067 1.37434 0.98630 0.86942 0.80868 0.82493 0.79540 1.19894 1.21326 1.18335 1.18252 0.86813 0.80184 0.83783 1.90637 1.69870 1.55566 1.31742 1.19901 0.93926 1.00946 0.95673 1.22548 0.93318 0.94523 0.96932 1.21163 0.94850 1.01199 0.98660 1.21076 0.99283 0.96863 0.93705 1.18936 0.93295 1.03467 0.95879 1.22297 1.04377 0.98088 0.93890 1.85815 1.68643 1.11436 1.12842 1.25419 1.05874 0.95424 0.91086 1.70793 1.18851 1.05607 1.26088 1.22301 1.03376 0.99594 0.91580 1.22796 1.07769 0.86308 1.02085 1.45480 1.44001 1.09600 1.14689 1.22097 1.04394 0.80686 0.99930 1.21026 0.92813 0.96598 0.97215 0.92991 0.92988 0.92958 0.92087 0.91139 0.91739 0.91134 0.91249 0.81448 0.85826 0.86361 0.88069 0.88065 0.81105 0.80656 0.90224 0.89328 0.89067 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.13 -2.52 6.26 -26.73 -0.17 -2.69 16 3 C 0.10 2.22 4.20 -4.04 -0.02 2.21 16 4 N -0.46 -10.77 2.13 -115.93 -0.25 -11.02 16 5 C -0.35 -8.53 6.58 -15.00 -0.10 -8.63 16 6 H 0.11 2.86 6.38 -52.49 -0.33 2.53 16 7 C 0.07 1.67 5.32 -17.45 -0.09 1.58 16 8 N -0.85 -22.14 13.95 55.50 0.77 -21.37 16 9 Si 0.87 19.65 24.92 -169.99 -4.24 15.41 16 10 H -0.27 -5.92 6.73 56.52 0.38 -5.54 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.26 -6.00 7.11 56.52 0.40 -5.59 16 13 C 0.52 12.27 7.41 -12.38 -0.09 12.18 16 14 O -0.59 -15.03 16.32 5.28 0.09 -14.94 16 15 C -0.10 -2.12 5.52 -104.97 -0.58 -2.70 16 16 C -0.05 -1.06 7.75 -39.17 -0.30 -1.37 16 17 C -0.14 -2.30 10.03 -39.64 -0.40 -2.70 16 18 C -0.09 -1.33 9.69 -39.48 -0.38 -1.71 16 19 C -0.11 -1.78 5.13 -104.68 -0.54 -2.31 16 20 C -0.04 -0.53 5.32 36.01 0.19 -0.34 16 21 S -0.02 -0.27 21.61 -107.50 -2.32 -2.60 16 22 C 0.19 2.56 7.96 -88.75 -0.71 1.85 16 23 N -0.49 -7.01 10.60 -13.45 -0.14 -7.16 16 24 C -0.02 -0.21 11.84 -17.81 -0.21 -0.42 16 25 C -0.05 -0.52 11.60 -16.29 -0.19 -0.70 16 26 N -0.45 -4.79 3.20 -124.32 -0.40 -5.19 16 27 C 0.07 0.48 11.01 59.85 0.66 1.14 16 28 C -0.06 -1.02 9.25 -39.17 -0.36 -1.38 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.42 3.39 -51.93 -0.18 1.25 16 35 H 0.07 1.54 7.37 -51.93 -0.38 1.16 16 36 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.17 3.60 5.39 -52.49 -0.28 3.32 16 38 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.10 1.32 8.08 -51.92 -0.42 0.90 16 41 H 0.10 1.43 8.08 -51.92 -0.42 1.01 16 42 H 0.17 1.46 8.06 -52.48 -0.42 1.03 16 43 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 47 H 0.13 2.30 7.96 -52.49 -0.42 1.88 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -30.50 400.40 -10.01 -40.52 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.64 Total: 8.24 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.92 Total: -7.92 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.01 Total: -44.74 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.24 Total: 15.41 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.32 Total: -2.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.50 -10.01 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058394037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.026 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds