Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 119.99875 * 2 1 4 4 C 1.38235 * 119.99857 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00240 * 0.02562 * 4 3 2 6 6 S 1.76201 * 120.00383 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.39915 * 341.12705 * 6 5 4 8 8 O 1.42103 * 106.40361 * 208.20957 * 6 5 4 9 9 N 1.65593 * 107.21614 * 94.66807 * 6 5 4 10 10 N 1.40101 * 120.00340 * 54.11563 * 9 6 5 11 11 C 1.29818 * 120.00099 * 185.07490 * 10 9 6 12 12 C 1.47338 * 120.00169 * 185.05194 * 11 10 9 13 13 C 1.39665 * 120.19277 * 5.44862 * 12 11 10 14 14 C 1.37907 * 119.90429 * 180.02562 * 13 12 11 15 15 C 1.38509 * 120.31761 * 0.02562 * 14 13 12 16 16 C 1.38143 * 120.39644 * 359.67530 * 15 14 13 17 17 C 1.38707 * 120.08244 * 0.60477 * 16 15 14 18 18 O 1.35627 * 120.15442 * 179.69689 * 17 16 15 19 19 C 1.34805 * 116.99788 * 5.74465 * 18 17 16 20 20 H 1.07999 * 120.00292 * 4.86749 * 19 18 17 21 21 C 1.38626 * 119.99484 * 184.60396 * 19 18 17 22 22 N 1.31571 * 120.00305 * 355.03826 * 21 19 18 23 23 Si 1.86797 * 119.99869 * 175.04251 * 21 19 18 24 24 H 1.48505 * 109.47034 * 89.99719 * 23 21 19 25 25 H 1.48500 * 109.47354 * 209.99698 * 23 21 19 26 26 H 1.48504 * 109.47363 * 329.99987 * 23 21 19 27 27 C 1.38244 * 119.99851 * 0.25682 * 5 4 3 28 28 C 1.38227 * 120.00012 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47794 * 89.99540 * 1 2 3 30 30 H 1.09003 * 109.46924 * 209.99450 * 1 2 3 31 31 H 1.09004 * 109.47303 * 329.98984 * 1 2 3 32 32 H 1.07998 * 120.00399 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00171 * 179.97438 * 4 3 2 34 34 H 0.97004 * 119.99902 * 234.11219 * 9 6 5 35 35 H 1.07994 * 120.00326 * 5.06175 * 11 10 9 36 36 H 1.08002 * 120.04644 * 0.04596 * 13 12 11 37 37 H 1.08005 * 119.84333 * 180.02562 * 14 13 12 38 38 H 1.07992 * 119.80079 * 179.97438 * 15 14 13 39 39 H 1.07997 * 119.95933 * 180.31742 * 16 15 14 40 40 H 0.96996 * 120.00259 * 185.01581 * 22 21 19 41 41 H 1.07995 * 120.00001 * 179.73117 * 27 5 4 42 42 H 1.08004 * 120.00363 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 16 6.0337 0.0000 -0.0030 7 8 6.4346 1.2901 -0.4437 8 8 6.4345 -1.2010 -0.6482 9 7 6.5250 -0.1294 1.5731 10 7 6.0537 -1.1811 2.3697 11 6 6.3596 -1.2279 3.6305 12 6 5.9584 -2.3895 4.4433 13 6 5.3500 -3.4924 3.8400 14 6 4.9764 -4.5762 4.6066 15 6 5.2012 -4.5767 5.9733 16 6 5.8076 -3.4952 6.5823 17 6 6.1847 -2.3939 5.8281 18 8 6.7747 -1.3287 6.4255 19 6 7.0750 -1.4497 7.7340 20 1 6.9177 -2.3911 8.2394 21 6 7.5911 -0.3673 8.4296 22 7 7.8792 0.7473 7.7926 23 14 7.8774 -0.4913 10.2714 24 1 9.2517 -0.9931 10.5259 25 1 7.7181 0.8500 10.8885 26 1 6.8903 -1.4292 10.8639 27 6 3.5805 -1.1972 -0.0075 28 6 2.1981 -1.1971 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1325 -0.0010 34 1 7.1393 0.5229 1.9447 35 1 6.9080 -0.4154 4.0836 36 1 5.1726 -3.4966 2.7747 37 1 4.5063 -5.4288 4.1390 38 1 4.9049 -5.4297 6.5657 39 1 5.9841 -3.5052 7.6478 40 1 8.3074 1.4787 8.2643 41 1 4.1205 -2.1324 -0.0127 42 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059146567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = -16.844217 kcal Electronic energy + Delta-G solvation = -28562.219895 eV Core-core repulsion = 24407.784574 eV Total energy + Delta-G solvation = -4154.435321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -39.45525 -39.27123 -37.23491 -36.90607 -36.16555 -35.85182 -33.21385 -32.54523 -32.06318 -31.19371 -29.27915 -28.71810 -27.50222 -25.53183 -23.41959 -23.01305 -22.08570 -21.56630 -20.26313 -19.56260 -18.17674 -18.09973 -17.59080 -16.87349 -16.77773 -15.89956 -15.52546 -15.05630 -14.89753 -14.58473 -14.53116 -14.27867 -14.09925 -13.94225 -13.75508 -13.69104 -13.09815 -12.86510 -12.67140 -12.59229 -12.49538 -12.30174 -12.18247 -12.06314 -11.94481 -11.85092 -11.50796 -11.32047 -11.05262 -10.99702 -10.87234 -10.81758 -10.56908 -9.99672 -9.60713 -9.51708 -9.25178 -9.16740 -8.99683 -7.99382 -7.30507 -6.64397 -4.22336 0.30648 0.72294 1.18288 1.42291 2.24744 2.72116 2.97889 3.02654 3.04607 3.08951 3.32507 3.75761 3.80876 4.30883 4.48512 4.53984 4.57735 4.76356 4.87268 4.93435 5.00213 5.11096 5.15591 5.24908 5.40319 5.43050 5.44539 5.55331 5.67799 5.70863 5.80084 5.91452 5.96772 6.01006 6.07275 6.26307 6.28398 6.32148 6.57030 6.66942 6.70137 6.92615 7.07944 7.19344 7.23448 7.62433 7.79364 8.18052 8.80538 9.44287 10.51730 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.002691 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.082302 B =10401.051081 C =11008.615415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.147 4.147 4 C -0.017 4.017 5 C -0.672 4.672 6 S 2.724 3.276 7 O -0.962 6.962 8 O -0.948 6.948 9 N -0.970 5.970 10 N -0.275 5.275 11 C 0.177 3.823 12 C -0.149 4.149 13 C -0.028 4.028 14 C -0.221 4.221 15 C -0.053 4.053 16 C -0.235 4.235 17 C 0.180 3.820 18 O -0.166 6.166 19 C -0.394 4.394 20 H 0.096 0.904 21 C 0.043 3.957 22 N -0.856 5.856 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.265 1.265 27 C 0.002 3.998 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.399 0.601 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.273 0.727 41 H 0.143 0.857 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 -2.219 -11.091 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.166 4.166 4 C -0.037 4.037 5 C -0.760 4.760 6 S 2.813 3.187 7 O -0.951 6.951 8 O -0.937 6.937 9 N -0.813 5.813 10 N -0.085 5.085 11 C -0.033 4.033 12 C -0.154 4.154 13 C -0.048 4.048 14 C -0.240 4.240 15 C -0.072 4.072 16 C -0.254 4.254 17 C 0.123 3.877 18 O -0.067 6.067 19 C -0.469 4.469 20 H 0.114 0.886 21 C -0.162 4.162 22 N -0.489 5.489 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.190 1.190 27 C -0.017 4.017 28 C -0.163 4.163 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.083 0.917 41 H 0.161 0.839 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.803 -2.038 -12.772 16.852 hybrid contribution 0.213 0.805 2.138 2.294 sum -10.590 -1.233 -10.635 15.059 Atomic orbital electron populations 1.20932 0.90704 1.03497 1.02784 1.20266 0.96411 0.93394 0.93185 1.21126 0.94102 0.97939 1.03404 1.20929 0.94796 0.96592 0.91369 1.30676 1.26532 0.99631 1.19145 1.01063 0.73530 0.73247 0.70853 1.93606 1.82151 1.40841 1.78504 1.93579 1.80536 1.47568 1.72048 1.57226 1.58070 1.35737 1.30280 1.74587 1.19973 1.06631 1.07350 1.24375 0.92965 0.96389 0.89537 1.17378 1.13060 0.95398 0.89589 1.20968 0.93243 0.91423 0.99215 1.20603 1.09562 0.99753 0.94111 1.20948 0.95074 0.96674 0.94531 1.21107 1.08083 0.95316 1.00919 1.19336 0.89795 0.87899 0.90713 1.83892 1.64408 1.32745 1.25671 1.21385 1.44202 0.99093 0.82270 0.88645 1.25318 0.96316 0.94071 1.00538 1.69999 1.37121 1.04523 1.37281 0.85682 0.79177 0.78311 0.80190 1.19743 1.20143 1.18982 1.20941 0.94576 0.96744 0.89476 1.21178 0.94212 0.97947 1.03008 0.90490 0.90880 0.91013 0.85214 0.84280 0.76481 0.85437 0.85740 0.87118 0.87121 0.85030 0.91670 0.83944 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.03 -0.33 5.88 -104.63 -0.62 -0.94 16 3 C -0.15 -1.57 9.70 -39.58 -0.38 -1.95 16 4 C -0.02 -0.22 9.53 -39.58 -0.38 -0.59 16 5 C -0.67 -9.13 5.94 -39.58 -0.23 -9.36 16 6 S 2.72 40.31 5.93 -107.50 -0.64 39.67 16 7 O -0.96 -15.31 17.18 -57.17 -0.98 -16.30 16 8 O -0.95 -16.28 17.40 -57.17 -0.99 -17.27 16 9 N -0.97 -14.83 6.77 60.35 0.41 -14.42 16 10 N -0.28 -4.72 10.58 32.13 0.34 -4.38 16 11 C 0.18 3.31 10.48 -14.70 -0.15 3.15 16 12 C -0.15 -2.92 5.88 -104.88 -0.62 -3.54 16 13 C -0.03 -0.48 9.57 -39.17 -0.37 -0.86 16 14 C -0.22 -3.50 10.03 -39.60 -0.40 -3.90 16 15 C -0.05 -0.87 10.03 -39.52 -0.40 -1.27 16 16 C -0.23 -4.58 9.13 -39.44 -0.36 -4.94 16 17 C 0.18 3.92 6.66 -38.63 -0.26 3.67 16 18 O -0.17 -4.23 8.96 0.50 0.00 -4.22 16 19 C -0.39 -9.98 9.44 30.88 0.29 -9.69 16 20 H 0.10 2.23 5.29 -52.49 -0.28 1.95 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -23.11 13.67 55.48 0.76 -22.35 16 23 Si 0.94 19.02 29.56 -169.99 -5.02 14.00 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 27 C 0.00 0.02 9.52 -39.58 -0.38 -0.35 16 28 C -0.14 -1.58 9.70 -39.58 -0.38 -1.97 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.53 7.52 -52.49 -0.39 1.13 16 34 H 0.40 5.43 8.80 -176.24 -1.55 3.88 16 35 H 0.13 2.48 7.63 -52.49 -0.40 2.08 16 36 H 0.12 1.94 7.56 -52.49 -0.40 1.54 16 37 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.13 2.54 5.70 -52.49 -0.30 2.24 16 40 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 41 H 0.14 1.74 7.72 -52.49 -0.41 1.33 16 42 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -31.75 383.46 -10.54 -42.29 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.81 Total: 9.25 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: -4.37 Total: -32.04 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 1.51 Total: -41.15 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.97 Total: -37.79 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 16 Polarization: 40.31 SS G_CDS: -0.64 Total: 39.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.75 -10.54 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059146567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.447 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds