Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 119.99875 * 2 1 4 4 C 1.38235 * 119.99857 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00240 * 0.02562 * 4 3 2 6 6 S 1.76201 * 120.00383 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.39915 * 341.12705 * 6 5 4 8 8 O 1.42103 * 106.40361 * 208.20957 * 6 5 4 9 9 N 1.65593 * 107.21614 * 94.66807 * 6 5 4 10 10 N 1.40101 * 120.00340 * 54.11563 * 9 6 5 11 11 C 1.29818 * 120.00099 * 185.07490 * 10 9 6 12 12 C 1.47338 * 120.00169 * 185.05194 * 11 10 9 13 13 C 1.39665 * 120.19277 * 5.44862 * 12 11 10 14 14 C 1.37907 * 119.90429 * 180.02562 * 13 12 11 15 15 C 1.38509 * 120.31761 * 0.02562 * 14 13 12 16 16 C 1.38143 * 120.39644 * 359.67530 * 15 14 13 17 17 C 1.38707 * 120.08244 * 0.60477 * 16 15 14 18 18 O 1.35627 * 120.15442 * 179.69689 * 17 16 15 19 19 C 1.34805 * 116.99788 * 5.74465 * 18 17 16 20 20 H 1.07999 * 120.00292 * 4.86749 * 19 18 17 21 21 C 1.38626 * 119.99484 * 184.60396 * 19 18 17 22 22 N 1.31571 * 120.00305 * 355.03826 * 21 19 18 23 23 Si 1.86797 * 119.99869 * 175.04251 * 21 19 18 24 24 H 1.48505 * 109.47034 * 89.99719 * 23 21 19 25 25 H 1.48500 * 109.47354 * 209.99698 * 23 21 19 26 26 H 1.48504 * 109.47363 * 329.99987 * 23 21 19 27 27 C 1.38244 * 119.99851 * 0.25682 * 5 4 3 28 28 C 1.38227 * 120.00012 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47794 * 89.99540 * 1 2 3 30 30 H 1.09003 * 109.46924 * 209.99450 * 1 2 3 31 31 H 1.09004 * 109.47303 * 329.98984 * 1 2 3 32 32 H 1.07998 * 120.00399 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00171 * 179.97438 * 4 3 2 34 34 H 0.97004 * 119.99902 * 234.11219 * 9 6 5 35 35 H 1.07994 * 120.00326 * 5.06175 * 11 10 9 36 36 H 1.08002 * 120.04644 * 0.04596 * 13 12 11 37 37 H 1.08005 * 119.84333 * 180.02562 * 14 13 12 38 38 H 1.07992 * 119.80079 * 179.97438 * 15 14 13 39 39 H 1.07997 * 119.95933 * 180.31742 * 16 15 14 40 40 H 0.96996 * 120.00259 * 185.01581 * 22 21 19 41 41 H 1.07995 * 120.00001 * 179.73117 * 27 5 4 42 42 H 1.08004 * 120.00363 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 16 6.0337 0.0000 -0.0030 7 8 6.4346 1.2901 -0.4437 8 8 6.4345 -1.2010 -0.6482 9 7 6.5250 -0.1294 1.5731 10 7 6.0537 -1.1811 2.3697 11 6 6.3596 -1.2279 3.6305 12 6 5.9584 -2.3895 4.4433 13 6 5.3500 -3.4924 3.8400 14 6 4.9764 -4.5762 4.6066 15 6 5.2012 -4.5767 5.9733 16 6 5.8076 -3.4952 6.5823 17 6 6.1847 -2.3939 5.8281 18 8 6.7747 -1.3287 6.4255 19 6 7.0750 -1.4497 7.7340 20 1 6.9177 -2.3911 8.2394 21 6 7.5911 -0.3673 8.4296 22 7 7.8792 0.7473 7.7926 23 14 7.8774 -0.4913 10.2714 24 1 9.2517 -0.9931 10.5259 25 1 7.7181 0.8500 10.8885 26 1 6.8903 -1.4292 10.8639 27 6 3.5805 -1.1972 -0.0075 28 6 2.1981 -1.1971 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1325 -0.0010 34 1 7.1393 0.5229 1.9447 35 1 6.9080 -0.4154 4.0836 36 1 5.1726 -3.4966 2.7747 37 1 4.5063 -5.4288 4.1390 38 1 4.9049 -5.4297 6.5657 39 1 5.9841 -3.5052 7.6478 40 1 8.3074 1.4787 8.2643 41 1 4.1205 -2.1324 -0.0127 42 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059146567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = -37.164997 kcal Electronic energy + Delta-G solvation = -28563.101070 eV Core-core repulsion = 24407.784574 eV Total energy + Delta-G solvation = -4155.316496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.84161 -40.31353 -38.56262 -38.40651 -37.61669 -37.15143 -34.31924 -34.01134 -33.50514 -32.06951 -30.73737 -30.19301 -28.23248 -27.32858 -24.85402 -23.89702 -23.10807 -22.96185 -21.71377 -20.75782 -19.84321 -19.28063 -18.93935 -18.40838 -18.13779 -16.97295 -16.60169 -16.38884 -16.13576 -15.99716 -15.83202 -15.63128 -15.44492 -15.18052 -14.77795 -14.56225 -14.54502 -14.30796 -14.21765 -13.54218 -13.52898 -13.39397 -13.30947 -13.24777 -13.16462 -13.13799 -13.02476 -12.57136 -12.39440 -12.37980 -12.13329 -12.12265 -11.85929 -11.46035 -11.25670 -10.89045 -10.77536 -10.11645 -10.06041 -9.42680 -8.85060 -8.47035 -6.13068 -0.87971 -0.23605 -0.03592 0.29842 0.76665 1.38983 1.41967 1.47295 1.55100 1.58127 2.17303 2.34021 2.64707 2.87830 3.11021 3.24118 3.40418 3.51526 3.77704 3.84574 3.91469 3.94342 4.22375 4.28840 4.32107 4.32762 4.56007 4.63917 4.66398 4.67214 4.79779 4.84472 4.91736 4.99086 5.06215 5.08400 5.10791 5.19190 5.23065 5.26082 5.46040 5.65423 5.69258 5.77955 5.86429 6.00870 6.21449 6.73461 6.97943 7.73122 8.73866 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.002691 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.082302 B =10401.051081 C =11008.615415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.030 4.030 3 C -0.151 4.151 4 C -0.035 4.035 5 C -0.686 4.686 6 S 2.735 3.265 7 O -0.975 6.975 8 O -0.973 6.973 9 N -0.971 5.971 10 N -0.257 5.257 11 C 0.162 3.838 12 C -0.155 4.155 13 C -0.035 4.035 14 C -0.197 4.197 15 C -0.046 4.046 16 C -0.247 4.247 17 C 0.149 3.851 18 O -0.214 6.214 19 C -0.411 4.411 20 H 0.107 0.893 21 C -0.016 4.016 22 N -0.913 5.913 23 Si 1.013 2.987 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.251 1.251 27 C -0.017 4.017 28 C -0.149 4.149 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.407 0.593 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.273 0.727 41 H 0.143 0.857 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 -4.531 -11.524 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.031 4.031 3 C -0.170 4.170 4 C -0.054 4.054 5 C -0.777 4.777 6 S 2.829 3.171 7 O -0.965 6.965 8 O -0.963 6.963 9 N -0.814 5.814 10 N -0.067 5.067 11 C -0.048 4.048 12 C -0.159 4.159 13 C -0.055 4.055 14 C -0.215 4.215 15 C -0.065 4.065 16 C -0.267 4.267 17 C 0.094 3.906 18 O -0.118 6.118 19 C -0.487 4.487 20 H 0.124 0.876 21 C -0.215 4.215 22 N -0.551 5.551 23 Si 0.833 3.167 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.174 1.174 27 C -0.036 4.036 28 C -0.167 4.167 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.162 0.838 34 H 0.243 0.757 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.082 0.918 41 H 0.160 0.840 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.744 -4.402 -13.237 19.583 hybrid contribution 0.894 1.339 1.933 2.516 sum -12.850 -3.063 -11.304 17.386 Atomic orbital electron populations 1.21020 0.88059 1.04560 1.04114 1.20737 0.98353 0.92836 0.91161 1.21510 0.93478 0.99568 1.02434 1.21167 0.95970 0.96378 0.91890 1.30325 1.24836 1.00824 1.21672 1.00481 0.74139 0.72344 0.70180 1.93579 1.83014 1.41270 1.78607 1.93537 1.81722 1.48504 1.72567 1.57254 1.58444 1.35545 1.30169 1.74481 1.18746 1.06972 1.06466 1.24226 0.94104 0.96486 0.89983 1.17671 1.12845 0.96344 0.89049 1.21276 0.92844 0.91011 1.00338 1.21146 1.06689 0.99918 0.93742 1.21384 0.93275 0.96562 0.95276 1.21278 1.08724 0.95777 1.00878 1.19837 0.90768 0.88158 0.91801 1.83875 1.67326 1.34710 1.25913 1.21833 1.44336 0.99744 0.82753 0.87570 1.26469 0.96125 0.93591 1.05267 1.70140 1.39952 1.05730 1.39241 0.84647 0.79499 0.78397 0.74171 1.19000 1.20142 1.17403 1.21122 0.95782 0.96383 0.90358 1.21536 0.93491 0.99572 1.02146 0.88820 0.89849 0.89989 0.82578 0.83772 0.75669 0.87226 0.83968 0.82826 0.83100 0.85474 0.91819 0.83955 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.01 71.24 0.71 -0.52 16 2 C -0.03 -0.54 5.88 -19.87 -0.12 -0.65 16 3 C -0.15 -2.92 9.70 22.27 0.22 -2.70 16 4 C -0.03 -0.83 9.53 22.27 0.21 -0.62 16 5 C -0.69 -18.45 5.94 22.27 0.13 -18.32 16 6 S 2.74 82.64 5.93 -56.49 -0.34 82.31 16 7 O -0.98 -31.78 17.18 -128.00 -2.20 -33.98 16 8 O -0.97 -33.95 17.40 -128.00 -2.23 -36.17 16 9 N -0.97 -30.67 6.77 37.02 0.25 -30.42 16 10 N -0.26 -8.96 10.58 -52.25 -0.55 -9.51 16 11 C 0.16 6.35 10.48 87.39 0.92 7.26 16 12 C -0.15 -6.10 5.88 -20.03 -0.12 -6.22 16 13 C -0.03 -1.11 9.57 22.54 0.22 -0.89 16 14 C -0.20 -5.37 10.03 22.26 0.22 -5.15 16 15 C -0.05 -1.35 10.03 22.31 0.22 -1.13 16 16 C -0.25 -9.49 9.13 22.36 0.20 -9.29 16 17 C 0.15 6.66 6.66 22.89 0.15 6.82 16 18 O -0.21 -11.57 8.96 -21.14 -0.19 -11.76 16 19 C -0.41 -21.84 9.44 67.91 0.64 -21.20 16 20 H 0.11 5.12 5.29 -2.91 -0.02 5.10 16 21 C -0.02 -0.83 5.49 84.82 0.47 -0.37 16 22 N -0.91 -52.45 13.67 21.61 0.30 -52.15 16 23 Si 1.01 40.09 29.56 68.60 2.03 42.12 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 27 C -0.02 -0.42 9.52 22.27 0.21 -0.21 16 28 C -0.15 -2.90 9.70 22.27 0.22 -2.68 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.14 3.16 7.52 -2.91 -0.02 3.14 16 34 H 0.41 11.74 8.80 -217.35 -1.91 9.82 16 35 H 0.11 4.66 7.63 -2.91 -0.02 4.64 16 36 H 0.14 4.04 7.56 -2.91 -0.02 4.02 16 37 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 39 H 0.13 4.91 5.70 -2.91 -0.02 4.89 16 40 H 0.27 14.49 8.32 -92.71 -0.77 13.71 16 41 H 0.14 3.37 7.72 -2.91 -0.02 3.35 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -72.87 383.46 0.74 -72.13 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.84 Total: 33.30 kcal Atomic # 6 Polarization: -60.38 SS G_CDS: 4.51 Total: -55.87 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -0.01 Total: -92.08 kcal Atomic # 8 Polarization: -77.29 SS G_CDS: -4.62 Total: -81.91 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 82.64 SS G_CDS: -0.34 Total: 82.31 kcal Total: -72.87 0.74 -72.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059146567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.966 kcal (2) G-P(sol) polarization free energy of solvation -72.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds