Wall clock time and date at job start Tue Mar 31 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31589 * 122.22991 * 2 1 4 4 C 1.29948 * 117.13921 * 180.02562 * 3 2 1 5 5 N 1.38888 * 125.36433 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99908 * 180.02562 * 5 4 3 7 7 O 1.21295 * 119.99882 * 354.80344 * 6 5 4 8 8 C 1.50700 * 120.00293 * 174.79858 * 6 5 4 9 9 C 1.50701 * 115.55076 * 304.81859 * 8 6 5 10 10 C 1.38233 * 120.00309 * 150.15323 * 9 8 6 11 11 C 1.38226 * 120.00056 * 179.78761 * 10 9 8 12 12 C 1.38234 * 120.00230 * 0.44032 * 11 10 9 13 13 C 1.38240 * 119.99899 * 359.81693 * 12 11 10 14 14 C 1.38228 * 119.99563 * 359.97093 * 13 12 11 15 15 C 1.53000 * 117.49893 * 159.14398 * 8 6 5 16 16 C 1.53004 * 117.49777 * 90.48274 * 8 6 5 17 17 S 1.76140 * 109.26778 * 0.02562 * 4 3 2 18 18 C 1.34655 * 122.22876 * 180.02562 * 2 1 3 19 19 S 1.76202 * 125.93511 * 359.97438 * 18 2 1 20 20 C 1.76191 * 100.00213 * 179.97438 * 19 18 2 21 21 H 1.08005 * 120.00158 * 0.02562 * 20 19 18 22 22 C 1.38433 * 120.00087 * 179.97438 * 20 19 18 23 23 N 1.31810 * 119.99855 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00030 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47166 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47292 * 120.00323 * 24 22 20 27 27 H 1.48500 * 109.46893 * 240.00324 * 24 22 20 28 28 H 1.08998 * 109.47050 * 269.97157 * 1 2 3 29 29 H 1.08998 * 109.47102 * 29.97599 * 1 2 3 30 30 H 1.09005 * 109.47075 * 149.97699 * 1 2 3 31 31 H 0.96996 * 120.00532 * 0.02562 * 5 4 3 32 32 H 1.08005 * 119.99511 * 359.97438 * 10 9 8 33 33 H 1.08002 * 119.99880 * 180.27743 * 11 10 9 34 34 H 1.08001 * 120.00263 * 179.83252 * 12 11 10 35 35 H 1.07999 * 119.99975 * 180.02562 * 13 12 11 36 36 H 1.08005 * 119.99729 * 180.02562 * 14 13 12 37 37 H 1.08996 * 117.50026 * 0.02562 * 15 8 6 38 38 H 1.09007 * 117.49453 * 145.02484 * 15 8 6 39 39 H 1.09000 * 117.49889 * 214.98127 * 16 8 6 40 40 H 1.08999 * 117.49729 * 359.97438 * 16 8 6 41 41 H 0.97001 * 119.99718 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9978 -0.0005 5 7 4.4044 2.0546 -0.0001 6 6 5.7298 1.8100 -0.0012 7 8 6.1364 0.6711 0.0925 8 6 6.7066 2.9515 -0.1191 9 6 6.5178 3.8476 -1.3159 10 6 6.8729 5.1816 -1.2435 11 6 6.7038 6.0025 -2.3427 12 6 6.1711 5.4916 -3.5115 13 6 5.8111 4.1588 -3.5823 14 6 5.9843 3.3369 -2.4845 15 6 8.1383 2.7088 0.3629 16 6 7.1965 3.5989 1.1778 17 16 3.9346 -0.7099 -0.0018 18 6 2.2252 -1.1391 -0.0005 19 16 1.5698 -2.7747 -0.0006 20 6 3.0666 -3.7041 -0.0021 21 1 4.0188 -3.1944 -0.0023 22 6 3.0222 -5.0878 -0.0021 23 7 1.8601 -5.7098 -0.0014 24 14 4.6092 -6.0732 -0.0030 25 1 5.7683 -5.1449 -0.0043 26 1 4.6611 -6.9290 1.2094 27 1 4.6597 -6.9289 -1.2156 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.0800 2.9687 0.0010 32 1 7.2852 5.5817 -0.3290 33 1 6.9854 7.0437 -2.2875 34 1 6.0365 6.1336 -4.3695 35 1 5.3953 3.7595 -4.4956 36 1 5.7034 2.2955 -2.5399 37 1 8.3737 1.7234 0.7648 38 1 8.9436 3.1976 -0.1855 39 1 7.3826 4.6728 1.1652 40 1 6.8119 3.1994 2.1162 41 1 1.8291 -6.6793 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059287274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:28 Heat of formation + Delta-G solvation = 55.051777 kcal Electronic energy + Delta-G solvation = -26078.209003 eV Core-core repulsion = 22369.644197 eV Total energy + Delta-G solvation = -3708.564805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.94341 -39.25624 -38.51870 -36.71573 -34.74755 -32.82130 -31.31852 -30.85129 -30.45473 -27.13802 -25.89306 -25.71203 -23.47525 -23.15557 -22.34638 -21.78481 -20.64206 -19.29344 -18.22343 -17.75202 -17.35332 -16.61696 -15.85260 -15.58468 -15.37917 -15.15688 -15.10485 -14.73746 -14.55090 -14.02520 -13.87677 -13.54537 -13.21770 -13.17888 -13.01136 -12.68618 -12.10584 -12.04555 -11.88868 -11.64177 -11.42373 -11.37091 -11.28119 -11.11885 -11.05560 -10.93301 -10.67020 -10.57266 -10.24617 -9.86816 -9.53867 -9.20582 -9.06441 -8.91249 -8.74603 -8.65205 -7.80218 -6.60242 -6.50008 -4.27729 0.98929 1.11848 1.36224 1.87899 2.33551 2.53345 2.82088 3.08407 3.08598 3.18217 3.25117 3.36325 3.60359 3.70854 3.97991 4.11265 4.36610 4.42681 4.57015 4.70413 4.73987 4.82493 4.88797 5.03821 5.10451 5.23453 5.25144 5.32032 5.38250 5.56753 5.68851 5.73984 5.80892 5.98394 6.14684 6.17725 6.23785 6.24484 6.27674 6.45669 6.49675 6.68554 6.97021 7.18161 7.33505 7.95951 8.04673 8.52540 8.88592 10.45604 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.002826 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.228540 B = 9905.945455 C =10877.602015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.474 5.474 4 C 0.188 3.812 5 N -0.607 5.607 6 C 0.546 3.454 7 O -0.499 6.499 8 C -0.119 4.119 9 C -0.046 4.046 10 C -0.115 4.115 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.111 4.111 14 C -0.106 4.106 15 C -0.128 4.128 16 C -0.152 4.152 17 S 0.197 5.803 18 C -0.250 4.250 19 S 0.149 5.851 20 C -0.555 4.555 21 H 0.089 0.911 22 C 0.082 3.918 23 N -0.863 5.863 24 Si 0.924 3.076 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.415 0.585 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.241 21.443 -2.219 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.195 5.195 4 C -0.183 4.183 5 N -0.255 5.255 6 C 0.330 3.670 7 O -0.373 6.373 8 C -0.123 4.123 9 C -0.046 4.046 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.138 4.138 13 C -0.129 4.129 14 C -0.124 4.124 15 C -0.165 4.165 16 C -0.189 4.189 17 S 0.441 5.559 18 C -0.486 4.486 19 S 0.399 5.601 20 C -0.704 4.704 21 H 0.107 0.893 22 C -0.129 4.129 23 N -0.496 5.496 24 Si 0.748 3.252 25 H -0.188 1.188 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.253 0.747 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.011 19.804 -2.169 21.866 hybrid contribution 1.033 0.371 -0.095 1.102 sum 10.044 20.175 -2.265 22.651 Atomic orbital electron populations 1.20118 0.88040 1.02109 1.01797 1.19041 0.96706 0.84566 1.11999 1.65809 1.02818 1.32363 1.18486 1.23769 0.89866 0.92768 1.11870 1.42283 1.04148 1.08157 1.70955 1.19454 0.81398 0.89491 0.76608 1.90720 1.77093 1.22053 1.47391 1.19968 0.97800 0.98004 0.96495 1.18747 1.00131 0.93021 0.92743 1.20988 1.00708 0.92612 0.98989 1.21106 0.99579 0.99715 0.93112 1.21203 0.99000 0.95533 0.98107 1.21169 0.99422 0.93844 0.98505 1.21063 0.98645 1.00164 0.92574 1.23154 0.89982 1.02355 1.01025 1.23262 1.02335 1.00044 0.93286 1.85833 1.01922 0.95482 1.72695 1.28754 1.01135 1.06729 1.12010 1.83073 1.11044 0.84401 1.81550 1.23305 0.93595 0.94034 1.59478 0.89287 1.25030 0.98265 0.96679 0.92937 1.70023 1.24358 1.10249 1.44971 0.85993 0.81369 0.79462 0.78334 1.18764 1.19990 1.19994 0.91874 0.91928 0.91045 0.74709 0.85609 0.85850 0.85957 0.85716 0.86117 0.86798 0.87394 0.87081 0.87543 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.01 0.36 -0.72 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.15 16 3 N -0.47 -9.61 10.55 -9.78 -0.10 -9.71 16 4 C 0.19 3.66 8.39 -87.20 -0.73 2.93 16 5 N -0.61 -9.28 5.33 -11.78 -0.06 -9.35 16 6 C 0.55 8.11 5.95 -10.98 -0.07 8.04 16 7 O -0.50 -9.25 14.01 5.54 0.08 -9.17 16 8 C -0.12 -1.28 2.38 -156.81 -0.37 -1.65 16 9 C -0.05 -0.47 5.45 -104.62 -0.57 -1.04 16 10 C -0.12 -0.93 9.36 -39.59 -0.37 -1.30 16 11 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 12 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 13 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 14 C -0.11 -1.20 9.30 -39.59 -0.37 -1.57 16 15 C -0.13 -1.17 9.72 -26.69 -0.26 -1.43 16 16 C -0.15 -1.20 9.57 -26.69 -0.26 -1.46 16 17 S 0.20 4.38 18.37 -107.50 -1.97 2.40 16 18 C -0.25 -5.79 6.67 29.46 0.20 -5.60 16 19 S 0.15 3.76 20.74 -107.50 -2.23 1.53 16 20 C -0.56 -15.19 9.26 30.80 0.29 -14.91 16 21 H 0.09 2.43 5.97 -52.48 -0.31 2.12 16 22 C 0.08 2.19 5.49 -17.49 -0.10 2.10 16 23 N -0.86 -23.84 13.22 55.47 0.73 -23.11 16 24 Si 0.92 20.78 29.55 -169.99 -5.02 15.75 16 25 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.26 7.38 -51.93 -0.38 0.87 16 31 H 0.42 5.29 8.82 -40.82 -0.36 4.93 16 32 H 0.13 0.74 5.95 -52.48 -0.31 0.43 16 33 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.57 7.33 -52.48 -0.38 1.18 16 37 H 0.11 1.19 7.83 -51.93 -0.41 0.78 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 0.61 6.10 -51.93 -0.32 0.29 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.28 7.06 8.32 -40.82 -0.34 6.73 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -31.66 375.97 -11.49 -43.15 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.57 Total: 3.72 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -4.01 Total: -20.87 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.57 Total: -42.17 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 8.13 SS G_CDS: -4.20 Total: 3.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.66 -11.49 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059287274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.202 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds