Wall clock time and date at job start Tue Mar 31 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31589 * 122.22991 * 2 1 4 4 C 1.29948 * 117.13921 * 180.02562 * 3 2 1 5 5 N 1.38888 * 125.36433 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99908 * 180.02562 * 5 4 3 7 7 O 1.21295 * 119.99882 * 354.80344 * 6 5 4 8 8 C 1.50700 * 120.00293 * 174.79858 * 6 5 4 9 9 C 1.50701 * 115.55076 * 304.81859 * 8 6 5 10 10 C 1.38233 * 120.00309 * 150.15323 * 9 8 6 11 11 C 1.38226 * 120.00056 * 179.78761 * 10 9 8 12 12 C 1.38234 * 120.00230 * 0.44032 * 11 10 9 13 13 C 1.38240 * 119.99899 * 359.81693 * 12 11 10 14 14 C 1.38228 * 119.99563 * 359.97093 * 13 12 11 15 15 C 1.53000 * 117.49893 * 159.14398 * 8 6 5 16 16 C 1.53004 * 117.49777 * 90.48274 * 8 6 5 17 17 S 1.76140 * 109.26778 * 0.02562 * 4 3 2 18 18 C 1.34655 * 122.22876 * 180.02562 * 2 1 3 19 19 S 1.76202 * 125.93511 * 359.97438 * 18 2 1 20 20 C 1.76191 * 100.00213 * 179.97438 * 19 18 2 21 21 H 1.08005 * 120.00158 * 0.02562 * 20 19 18 22 22 C 1.38433 * 120.00087 * 179.97438 * 20 19 18 23 23 N 1.31810 * 119.99855 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00030 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47166 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47292 * 120.00323 * 24 22 20 27 27 H 1.48500 * 109.46893 * 240.00324 * 24 22 20 28 28 H 1.08998 * 109.47050 * 269.97157 * 1 2 3 29 29 H 1.08998 * 109.47102 * 29.97599 * 1 2 3 30 30 H 1.09005 * 109.47075 * 149.97699 * 1 2 3 31 31 H 0.96996 * 120.00532 * 0.02562 * 5 4 3 32 32 H 1.08005 * 119.99511 * 359.97438 * 10 9 8 33 33 H 1.08002 * 119.99880 * 180.27743 * 11 10 9 34 34 H 1.08001 * 120.00263 * 179.83252 * 12 11 10 35 35 H 1.07999 * 119.99975 * 180.02562 * 13 12 11 36 36 H 1.08005 * 119.99729 * 180.02562 * 14 13 12 37 37 H 1.08996 * 117.50026 * 0.02562 * 15 8 6 38 38 H 1.09007 * 117.49453 * 145.02484 * 15 8 6 39 39 H 1.09000 * 117.49889 * 214.98127 * 16 8 6 40 40 H 1.08999 * 117.49729 * 359.97438 * 16 8 6 41 41 H 0.97001 * 119.99718 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9978 -0.0005 5 7 4.4044 2.0546 -0.0001 6 6 5.7298 1.8100 -0.0012 7 8 6.1364 0.6711 0.0925 8 6 6.7066 2.9515 -0.1191 9 6 6.5178 3.8476 -1.3159 10 6 6.8729 5.1816 -1.2435 11 6 6.7038 6.0025 -2.3427 12 6 6.1711 5.4916 -3.5115 13 6 5.8111 4.1588 -3.5823 14 6 5.9843 3.3369 -2.4845 15 6 8.1383 2.7088 0.3629 16 6 7.1965 3.5989 1.1778 17 16 3.9346 -0.7099 -0.0018 18 6 2.2252 -1.1391 -0.0005 19 16 1.5698 -2.7747 -0.0006 20 6 3.0666 -3.7041 -0.0021 21 1 4.0188 -3.1944 -0.0023 22 6 3.0222 -5.0878 -0.0021 23 7 1.8601 -5.7098 -0.0014 24 14 4.6092 -6.0732 -0.0030 25 1 5.7683 -5.1449 -0.0043 26 1 4.6611 -6.9290 1.2094 27 1 4.6597 -6.9289 -1.2156 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.0800 2.9687 0.0010 32 1 7.2852 5.5817 -0.3290 33 1 6.9854 7.0437 -2.2875 34 1 6.0365 6.1336 -4.3695 35 1 5.3953 3.7595 -4.4956 36 1 5.7034 2.2955 -2.5399 37 1 8.3737 1.7234 0.7648 38 1 8.9436 3.1976 -0.1855 39 1 7.3826 4.6728 1.1652 40 1 6.8119 3.1994 2.1162 41 1 1.8291 -6.6793 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059287274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:27 Heat of formation + Delta-G solvation = 37.694673 kcal Electronic energy + Delta-G solvation = -26078.961663 eV Core-core repulsion = 22369.644197 eV Total energy + Delta-G solvation = -3709.317466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03529 -40.47217 -39.85846 -37.56414 -36.19929 -34.83763 -32.23758 -31.81429 -31.47311 -28.83516 -27.75211 -26.98765 -24.56119 -23.85103 -23.23694 -22.79329 -22.06734 -20.72411 -19.66651 -19.21441 -18.63144 -17.64921 -17.48309 -17.09759 -16.75162 -16.57638 -16.03483 -15.74999 -15.59684 -15.36216 -15.12134 -14.96273 -14.43326 -14.28712 -13.92423 -13.82420 -13.56395 -13.42931 -13.30121 -13.08976 -12.92227 -12.75157 -12.42938 -12.22341 -12.17651 -12.08826 -12.05859 -11.80526 -11.62793 -11.37665 -11.24634 -10.82443 -10.52499 -10.50728 -9.87273 -9.61469 -9.54895 -8.59894 -8.39582 -6.32139 -0.29454 0.16072 0.31635 0.45245 0.78202 1.04906 1.24459 1.30922 1.37621 1.46363 1.61032 1.95791 2.12297 2.53137 2.79296 2.96541 3.07103 3.30230 3.36934 3.64900 3.72105 3.85838 4.05286 4.09875 4.26278 4.40443 4.47881 4.61825 4.64465 4.65516 4.73357 4.82865 4.91304 4.93568 5.00267 5.04731 5.08215 5.16127 5.27816 5.43866 5.53464 5.57555 5.60631 5.85305 6.00290 6.05082 6.67498 6.81697 6.85069 8.48169 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.002826 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.228540 B = 9905.945455 C =10877.602015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.481 5.481 4 C 0.226 3.774 5 N -0.597 5.597 6 C 0.547 3.453 7 O -0.536 6.536 8 C -0.133 4.133 9 C -0.052 4.052 10 C -0.109 4.109 11 C -0.112 4.112 12 C -0.122 4.122 13 C -0.125 4.125 14 C -0.134 4.134 15 C -0.130 4.130 16 C -0.124 4.124 17 S 0.155 5.845 18 C -0.278 4.278 19 S 0.103 5.897 20 C -0.576 4.576 21 H 0.079 0.921 22 C 0.036 3.964 23 N -0.895 5.895 24 Si 0.985 3.015 25 H -0.270 1.270 26 H -0.262 1.262 27 H -0.263 1.263 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.432 0.568 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.148 0.852 40 H 0.104 0.896 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 25.583 -1.892 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.203 5.203 4 C -0.147 4.147 5 N -0.248 5.248 6 C 0.334 3.666 7 O -0.412 6.412 8 C -0.136 4.136 9 C -0.052 4.052 10 C -0.127 4.127 11 C -0.130 4.130 12 C -0.140 4.140 13 C -0.143 4.143 14 C -0.153 4.153 15 C -0.167 4.167 16 C -0.161 4.161 17 S 0.399 5.601 18 C -0.514 4.514 19 S 0.351 5.649 20 C -0.724 4.724 21 H 0.097 0.903 22 C -0.171 4.171 23 N -0.529 5.529 24 Si 0.806 3.194 25 H -0.194 1.194 26 H -0.187 1.187 27 H -0.187 1.187 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.273 0.727 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.122 0.878 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.688 24.007 -1.843 26.343 hybrid contribution 0.618 -0.545 -0.230 0.855 sum 11.306 23.462 -2.073 26.127 Atomic orbital electron populations 1.20250 0.85525 1.03165 1.03163 1.19726 0.98474 0.84085 1.08179 1.66023 1.02636 1.31450 1.20200 1.24098 0.90203 0.92834 1.07543 1.42471 1.03940 1.07837 1.70514 1.20419 0.81404 0.90304 0.74476 1.90709 1.77515 1.24240 1.48709 1.19904 0.97354 0.97416 0.98935 1.18709 1.00909 0.93938 0.91674 1.21283 0.99733 0.91265 1.00393 1.21525 0.98028 1.01131 0.92299 1.21515 0.98187 0.94832 0.99430 1.21298 1.00032 0.94813 0.98195 1.20961 1.00997 0.99028 0.94298 1.23257 0.89797 1.02241 1.01435 1.23477 0.99425 1.01776 0.91403 1.86022 1.02561 0.98019 1.73468 1.28583 1.01376 1.06119 1.15305 1.82863 1.11140 0.86028 1.84875 1.23472 0.93835 0.94859 1.60256 0.90277 1.25879 1.01405 0.97399 0.92466 1.70094 1.26051 1.10743 1.46049 0.85092 0.77152 0.77977 0.79134 1.19401 1.18674 1.18727 0.90223 0.89516 0.91272 0.72748 0.82622 0.82694 0.83761 0.85594 0.89367 0.88743 0.85158 0.83402 0.87757 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.12 10.02 71.24 0.71 -1.41 16 2 C 0.04 1.56 6.73 41.77 0.28 1.85 16 3 N -0.48 -19.19 10.55 -184.87 -1.95 -21.14 16 4 C 0.23 8.80 8.39 179.15 1.50 10.30 16 5 N -0.60 -17.88 5.33 -309.56 -1.65 -19.53 16 6 C 0.55 16.13 5.95 87.66 0.52 16.66 16 7 O -0.54 -20.46 14.01 -3.08 -0.04 -20.51 16 8 C -0.13 -2.60 2.38 -53.67 -0.13 -2.73 16 9 C -0.05 -0.93 5.45 -19.87 -0.11 -1.04 16 10 C -0.11 -1.28 9.36 22.27 0.21 -1.07 16 11 C -0.11 -1.18 10.05 22.27 0.22 -0.96 16 12 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 13 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 14 C -0.13 -2.99 9.30 22.27 0.21 -2.79 16 15 C -0.13 -2.10 9.72 30.62 0.30 -1.80 16 16 C -0.12 -1.51 9.57 30.62 0.29 -1.21 16 17 S 0.15 7.16 18.37 -56.49 -1.04 6.12 16 18 C -0.28 -13.39 6.67 67.00 0.45 -12.94 16 19 S 0.10 5.48 20.74 -56.49 -1.17 4.31 16 20 C -0.58 -33.06 9.26 67.87 0.63 -32.43 16 21 H 0.08 4.57 5.97 -2.91 -0.02 4.55 16 22 C 0.04 1.98 5.49 84.74 0.47 2.45 16 23 N -0.89 -51.08 13.22 21.59 0.29 -50.80 16 24 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.07 2.44 7.38 -2.38 -0.02 2.42 16 31 H 0.43 10.26 8.82 -92.71 -0.82 9.44 16 32 H 0.16 0.84 5.95 -2.91 -0.02 0.82 16 33 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.09 2.45 7.33 -2.91 -0.02 2.43 16 37 H 0.09 1.92 7.83 -2.39 -0.02 1.90 16 38 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.15 0.73 6.10 -2.39 -0.01 0.72 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.28 14.78 8.32 -92.71 -0.77 14.01 16 Total: -1.00 -72.96 375.97 2.74 -70.22 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.28 Total: 16.13 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 6.00 Total: -30.59 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -3.31 Total: -91.47 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.51 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 12.64 SS G_CDS: -2.21 Total: 10.43 kcal Total: -72.96 2.74 -70.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059287274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.918 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds