Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46954 * 2 1 4 4 N 1.46505 * 109.46687 * 180.02562 * 3 2 1 5 5 C 1.36784 * 119.99800 * 264.60286 * 4 3 2 6 6 H 1.08002 * 119.99485 * 140.70646 * 5 4 3 7 7 C 1.39111 * 120.00382 * 320.70498 * 5 4 3 8 8 N 1.31322 * 119.99943 * 165.59520 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 345.59118 * 7 5 4 10 10 H 1.48492 * 109.47329 * 90.91871 * 9 7 5 11 11 H 1.48503 * 109.47186 * 210.92068 * 9 7 5 12 12 H 1.48505 * 109.47092 * 330.92126 * 9 7 5 13 13 C 1.34773 * 120.00013 * 84.60886 * 4 3 2 14 14 O 1.21548 * 119.99822 * 355.20021 * 13 4 3 15 15 C 1.48185 * 120.00358 * 175.47525 * 13 4 3 16 16 C 1.41918 * 126.85245 * 183.92291 * 15 13 4 17 17 C 1.36766 * 103.81828 * 179.85859 * 16 15 13 18 18 C 1.47724 * 126.81734 * 180.12963 * 17 16 15 19 19 C 1.39565 * 120.14672 * 310.34735 * 18 17 16 20 20 C 1.38361 * 119.85352 * 179.97438 * 19 18 17 21 21 O 1.35990 * 119.92023 * 180.02562 * 20 19 18 22 22 C 1.42891 * 116.99813 * 180.02562 * 21 20 19 23 23 C 1.38874 * 120.15578 * 0.02562 * 20 19 18 24 24 C 1.38152 * 120.30575 * 359.96978 * 23 20 19 25 25 C 1.38550 * 120.14272 * 359.79392 * 24 23 20 26 26 O 1.35868 * 120.07613 * 180.23364 * 25 24 23 27 27 C 1.42898 * 117.00704 * 0.23090 * 26 25 24 28 28 O 1.34482 * 106.37300 * 0.39763 * 17 16 15 29 29 N 1.20881 * 111.74805 * 359.72668 * 28 17 16 30 30 H 1.09003 * 109.47050 * 299.99570 * 1 2 3 31 31 H 1.08996 * 109.47475 * 59.99693 * 1 2 3 32 32 H 1.09008 * 109.47116 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47050 * 240.00430 * 2 1 3 34 34 H 1.08996 * 109.47475 * 120.00307 * 2 1 3 35 35 H 1.09003 * 109.46891 * 60.00332 * 3 2 1 36 36 H 1.08996 * 109.47280 * 300.00426 * 3 2 1 37 37 H 0.96999 * 119.99640 * 180.02562 * 8 7 5 38 38 H 1.08006 * 128.09065 * 0.02562 * 16 15 13 39 39 H 1.07999 * 120.07444 * 0.02562 * 19 18 17 40 40 H 1.08997 * 109.47490 * 59.99944 * 22 21 20 41 41 H 1.08999 * 109.47234 * 180.02562 * 22 21 20 42 42 H 1.09006 * 109.47238 * 299.99985 * 22 21 20 43 43 H 1.07998 * 119.84788 * 180.02562 * 23 20 19 44 44 H 1.08003 * 119.92780 * 180.02562 * 24 23 20 45 45 H 1.08989 * 109.47642 * 180.02562 * 27 26 25 46 46 H 1.09007 * 109.46981 * 300.00363 * 27 26 25 47 47 H 1.09000 * 109.46812 * 59.99823 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1894 1.5537 1.1785 6 1 5.0863 0.9738 1.3389 7 6 3.7302 2.4136 2.1709 8 7 4.2047 2.3202 3.3918 9 14 2.4388 3.7013 1.7667 10 1 1.0859 3.1371 2.0039 11 1 2.6378 4.8909 2.6330 12 1 2.5660 4.0998 0.3418 13 6 4.1784 1.3329 -1.1629 14 8 3.5733 1.1467 -2.2005 15 6 5.6568 1.4335 -1.1751 16 6 6.5016 1.4173 -2.3153 17 6 7.7591 1.5408 -1.7919 18 6 9.0304 1.5833 -2.5430 19 6 9.3049 0.6165 -3.5115 20 6 10.4973 0.6624 -4.2118 21 8 10.7660 -0.2785 -5.1561 22 6 12.0157 -0.1720 -5.8409 23 6 11.4204 1.6671 -3.9526 24 6 11.1553 2.6274 -2.9955 25 6 9.9631 2.5962 -2.2902 26 8 9.7017 3.5441 -1.3525 27 6 10.6988 4.5471 -1.1483 28 8 7.6091 1.6098 -0.4573 29 7 6.4460 1.5495 -0.1335 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.8842 2.9196 4.0838 38 1 6.2177 1.3308 -3.3538 39 1 8.5879 -0.1651 -3.7145 40 1 12.8313 -0.2383 -5.1210 41 1 12.1032 -0.9817 -6.5653 42 1 12.0655 0.7857 -6.3592 43 1 12.3494 1.6984 -4.5025 44 1 11.8773 3.4062 -2.7991 45 1 10.3653 5.2389 -0.3749 46 1 11.6304 4.0751 -0.8359 47 1 10.8617 5.0921 -2.0781 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061412111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = 3.681758 kcal Electronic energy + Delta-G solvation = -32206.757583 eV Core-core repulsion = 27746.292559 eV Total energy + Delta-G solvation = -4460.465024 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.15333 -40.58761 -39.12775 -38.80860 -36.61180 -35.37628 -33.43820 -33.11171 -32.47464 -31.57134 -30.39419 -29.24740 -27.55673 -27.07689 -26.36889 -25.11936 -23.54716 -23.13928 -22.06951 -21.56031 -21.10080 -19.36586 -18.50480 -17.86962 -17.30223 -17.03888 -16.60525 -16.19937 -16.03851 -16.00266 -15.68572 -15.34875 -14.93916 -14.67260 -14.26990 -14.14981 -13.90264 -13.68123 -13.39979 -13.21629 -13.02892 -13.01824 -12.84214 -12.49199 -12.35123 -12.30451 -11.82040 -11.79148 -11.73967 -11.52798 -11.06738 -11.00120 -10.90764 -10.85199 -10.61778 -10.32764 -9.93528 -9.74741 -9.66029 -9.51406 -9.29403 -8.81758 -8.62365 -7.85404 -7.82960 -6.46155 -4.06858 0.75479 1.24352 2.05454 2.37700 2.94275 3.03293 3.18002 3.20347 3.25650 3.41242 3.73089 4.07806 4.10640 4.20462 4.46219 4.54677 4.76169 4.85311 4.86045 4.87670 4.94237 5.03250 5.06995 5.17229 5.21346 5.32244 5.40906 5.55670 5.59000 5.61882 5.67170 5.70784 5.81196 5.87670 5.98259 6.01161 6.06279 6.15847 6.27801 6.34520 6.35105 6.42044 6.54187 6.75084 6.87860 7.07840 7.29149 7.31811 8.03121 8.38911 8.79407 9.02121 9.29979 9.57918 10.63262 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002737 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.019911 B =10228.798610 C =11727.545979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.099 3.901 4 N -0.440 5.440 5 C -0.330 4.330 6 H 0.126 0.874 7 C 0.068 3.932 8 N -0.851 5.851 9 Si 0.879 3.121 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.539 3.461 14 O -0.590 6.590 15 C -0.005 4.005 16 C -0.166 4.166 17 C -0.018 4.018 18 C -0.002 4.002 19 C -0.083 4.083 20 C 0.090 3.910 21 O -0.315 6.315 22 C 0.028 3.972 23 C -0.158 4.158 24 C -0.171 4.171 25 C 0.121 3.879 26 O -0.301 6.301 27 C 0.027 3.973 28 O 0.125 5.875 29 N -0.283 5.283 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.276 0.724 38 H 0.173 0.827 39 H 0.146 0.854 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.102 0.898 46 H 0.055 0.945 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.354 0.462 -13.109 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.023 4.023 4 N -0.159 5.159 5 C -0.459 4.459 6 H 0.143 0.857 7 C -0.140 4.140 8 N -0.486 5.486 9 Si 0.708 3.292 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.328 3.672 14 O -0.475 6.475 15 C -0.162 4.162 16 C -0.189 4.189 17 C -0.081 4.081 18 C -0.005 4.005 19 C -0.102 4.102 20 C 0.045 3.955 21 O -0.229 6.229 22 C -0.067 4.067 23 C -0.177 4.177 24 C -0.190 4.190 25 C 0.075 3.925 26 O -0.213 6.213 27 C -0.068 4.068 28 O 0.048 5.952 29 N 0.018 4.982 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.190 0.810 39 H 0.164 0.836 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.121 0.879 46 H 0.074 0.926 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.461 0.372 -12.008 18.801 hybrid contribution -0.107 1.055 -0.798 1.327 sum 14.354 1.428 -12.806 19.289 Atomic orbital electron populations 1.21705 0.96159 1.01196 1.01417 1.21761 0.94963 0.97515 1.02816 1.21814 0.81813 0.97297 1.01363 1.43686 1.04353 1.61782 1.06043 1.19583 1.11486 1.25065 0.89762 0.85701 1.25426 0.97186 0.96483 0.94896 1.69642 1.41850 1.36377 1.00729 0.86954 0.81155 0.81516 0.79618 1.19762 1.21424 1.18689 1.17040 0.83625 0.82977 0.83546 1.90630 1.68223 1.56323 1.32305 1.23225 0.97027 1.07142 0.88804 1.22498 0.89653 1.05928 1.00781 1.21886 0.93968 1.07376 0.84831 1.16554 0.90792 0.95359 0.97747 1.20215 0.95944 0.98842 0.95230 1.18584 0.94580 0.90337 0.91977 1.86100 1.38480 1.48565 1.49778 1.23036 0.84346 1.02965 0.96358 1.21091 1.00030 0.95869 1.00726 1.20921 0.97031 1.01727 0.99321 1.18949 0.93159 0.89913 0.90503 1.86228 1.44315 1.36990 1.53780 1.23099 0.91627 0.90095 1.01993 1.85095 1.23324 1.65403 1.21390 1.74836 0.88102 1.13564 1.21661 0.92993 0.92939 0.92873 0.91531 0.91249 0.91142 0.91338 0.91322 0.80989 0.83606 0.92738 0.88266 0.92768 0.84985 0.84642 0.87940 0.92594 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.64 6.22 -26.73 -0.17 -2.81 16 3 C 0.10 2.28 3.83 -4.04 -0.02 2.27 16 4 N -0.44 -11.34 2.20 -115.77 -0.25 -11.59 16 5 C -0.33 -9.13 8.42 -15.02 -0.13 -9.25 16 6 H 0.13 3.71 6.23 -52.49 -0.33 3.38 16 7 C 0.07 1.88 5.39 -17.45 -0.09 1.78 16 8 N -0.85 -24.14 13.95 55.50 0.77 -23.36 16 9 Si 0.88 21.15 24.74 -169.99 -4.21 16.94 16 10 H -0.27 -6.09 6.59 56.52 0.37 -5.72 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.26 -6.46 7.09 56.52 0.40 -6.05 16 13 C 0.54 13.78 7.61 -12.18 -0.09 13.69 16 14 O -0.59 -15.40 16.59 5.32 0.09 -15.31 16 15 C 0.00 -0.11 6.90 -82.65 -0.57 -0.68 16 16 C -0.17 -3.23 10.88 -38.71 -0.42 -3.66 16 17 C -0.02 -0.32 6.42 -36.24 -0.23 -0.55 16 18 C 0.00 -0.04 5.82 -104.87 -0.61 -0.65 16 19 C -0.08 -1.07 9.65 -39.04 -0.38 -1.44 16 20 C 0.09 1.00 6.68 -39.30 -0.26 0.74 16 21 O -0.32 -3.24 10.49 -19.71 -0.21 -3.45 16 22 C 0.03 0.17 9.81 101.05 0.99 1.16 16 23 C -0.16 -1.48 9.03 -39.38 -0.36 -1.83 16 24 C -0.17 -1.72 9.03 -39.50 -0.36 -2.07 16 25 C 0.12 1.61 6.69 -38.81 -0.26 1.35 16 26 O -0.30 -4.24 9.87 -19.33 -0.19 -4.43 16 27 C 0.03 0.24 9.81 101.05 0.99 1.23 16 28 O 0.13 2.64 11.11 15.99 0.18 2.82 16 29 N -0.28 -6.81 8.97 33.35 0.30 -6.51 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.07 1.64 3.07 -51.93 -0.16 1.48 16 36 H 0.07 1.54 7.66 -51.93 -0.40 1.14 16 37 H 0.28 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.17 2.93 8.06 -52.48 -0.42 2.51 16 39 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 43 H 0.13 0.84 6.27 -52.49 -0.33 0.51 16 44 H 0.14 0.98 6.29 -52.48 -0.33 0.65 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 47 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -33.51 392.32 -5.30 -38.80 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.10 Total: 2.90 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.59 Total: -2.71 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.82 Total: -41.47 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.13 Total: -20.38 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.21 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.51 -5.30 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061412111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.483 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds