Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20827 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00242 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 60.00359 * 5 3 2 7 7 N 1.46901 * 109.47121 * 180.02562 * 5 3 2 8 8 C 1.46900 * 110.99890 * 274.99849 * 7 5 3 9 9 C 1.50698 * 109.47212 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00371 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99756 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99571 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47342 * 89.99800 * 12 11 9 14 14 H 1.08001 * 119.99999 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00376 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00112 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46947 * 89.99756 * 17 15 13 19 19 H 1.48493 * 109.47578 * 209.99873 * 17 15 13 20 20 H 1.48500 * 109.46993 * 330.00509 * 17 15 13 21 21 C 1.46497 * 120.00043 * 359.97438 * 11 9 8 22 22 C 1.52997 * 109.47065 * 90.00544 * 21 11 9 23 23 C 1.47198 * 109.47249 * 179.97438 * 22 21 11 24 24 N 7.43759 * 95.90447 * 300.75053 * 2 1 3 25 25 C 1.50701 * 109.47269 * 300.00444 * 5 3 2 26 26 C 1.38242 * 119.99675 * 279.72800 * 25 5 3 27 27 C 1.38235 * 119.99458 * 179.81160 * 26 25 5 28 28 C 1.38236 * 120.00304 * 0.38687 * 27 26 25 29 29 C 1.38242 * 119.99796 * 359.86995 * 28 27 26 30 30 C 1.38230 * 119.99958 * 359.94576 * 29 28 27 31 31 H 1.08999 * 109.46796 * 299.99226 * 1 2 3 32 32 H 1.09000 * 109.47771 * 59.99189 * 1 2 3 33 33 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 34 34 H 1.00898 * 111.00476 * 38.95239 * 7 5 3 35 35 H 1.09002 * 109.47391 * 300.00224 * 8 7 5 36 36 H 1.09005 * 109.47266 * 59.99895 * 8 7 5 37 37 H 1.08997 * 109.46940 * 209.99731 * 12 11 9 38 38 H 1.09001 * 109.47255 * 329.99613 * 12 11 9 39 39 H 0.96996 * 120.00470 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47083 * 210.00264 * 21 11 9 41 41 H 1.08999 * 109.47276 * 329.99876 * 21 11 9 42 42 H 1.09003 * 109.46942 * 299.99806 * 22 21 11 43 43 H 1.08999 * 109.47619 * 59.99542 * 22 21 11 44 44 H 1.07997 * 120.00052 * 359.97438 * 26 25 5 45 45 H 1.08000 * 119.99878 * 180.22948 * 27 26 25 46 46 H 1.08004 * 120.00024 * 179.83199 * 28 27 26 47 47 H 1.08000 * 119.99869 * 179.97438 * 29 28 27 48 48 H 1.07999 * 119.99817 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 7 3.9828 2.6836 0.0002 8 6 4.0168 3.2232 -1.3657 9 6 4.4467 4.6670 -1.3249 10 8 4.7002 5.1945 -0.2627 11 7 4.5494 5.3721 -2.4690 12 6 4.9678 6.7755 -2.4293 13 6 6.4686 6.8557 -2.5411 14 1 7.0523 5.9517 -2.6329 15 6 7.0963 8.0831 -2.5271 16 7 6.3854 9.1841 -2.4168 17 14 8.9566 8.1825 -2.6648 18 1 9.3425 8.2794 -4.0956 19 1 9.4434 9.3827 -1.9385 20 1 9.5628 6.9643 -2.0702 21 6 4.2437 4.7348 -3.7522 22 6 2.7590 4.9193 -4.0723 23 6 2.4520 4.2795 -5.3619 24 7 2.2171 3.7827 -6.3580 25 6 4.1057 0.5914 1.2295 26 6 4.1111 1.2547 2.4424 27 6 4.6023 0.6263 3.5714 28 6 5.0954 -0.6623 3.4861 29 6 5.0948 -1.3235 2.2720 30 6 4.6001 -0.6966 1.1438 31 1 -0.3633 0.5137 0.8901 32 1 -0.3635 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.3831 3.2378 0.5929 35 1 4.7240 2.6500 -1.9654 36 1 3.0236 3.1526 -1.8092 37 1 4.5124 7.3141 -3.2604 38 1 4.6492 7.2233 -1.4880 39 1 6.8270 10.0477 -2.4074 40 1 4.8445 5.1932 -4.5378 41 1 4.4734 3.6709 -3.6933 42 1 2.1583 4.4609 -3.2868 43 1 2.5294 5.9832 -4.1312 44 1 3.7292 2.2627 2.5083 45 1 4.6031 1.1430 4.5198 46 1 5.4816 -1.1522 4.3677 47 1 5.4804 -2.3301 2.2052 48 1 4.5993 -1.2133 0.1955 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064844124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = -54.484463 kcal Electronic energy + Delta-G solvation = -31856.830572 eV Core-core repulsion = 27491.561933 eV Total energy + Delta-G solvation = -4365.268639 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.09550 -39.39009 -39.16688 -37.15144 -36.81582 -35.65022 -35.11982 -32.91613 -31.89525 -31.03486 -30.84162 -28.81058 -28.10206 -26.71733 -24.95535 -24.00718 -22.83557 -22.48816 -22.20386 -20.67494 -18.77651 -18.16601 -17.77588 -17.29163 -17.20036 -16.60560 -16.45327 -16.38953 -15.83439 -15.27556 -15.15022 -14.89123 -14.69710 -14.43464 -14.18824 -13.90188 -13.82591 -13.54243 -13.52670 -13.38622 -12.92623 -12.78611 -12.66518 -12.51556 -12.43434 -12.27510 -12.09354 -11.95107 -11.70279 -11.37311 -11.26970 -11.17656 -11.09209 -10.99597 -10.95865 -10.85202 -10.60686 -10.17826 -9.69584 -9.12178 -9.04355 -8.95396 -8.71689 -8.45863 -7.84459 -6.07310 -4.11802 1.09939 1.28601 1.86635 2.41644 2.70276 2.78524 3.27110 3.30195 3.37485 3.40397 3.43828 3.66621 3.96211 4.26658 4.34635 4.43788 4.56919 4.60427 4.81054 4.86886 4.88906 4.92807 4.93620 4.97928 5.02994 5.11578 5.21951 5.27410 5.28575 5.35210 5.39358 5.46569 5.52406 5.75383 5.81164 5.89182 6.04052 6.05468 6.25131 6.32781 6.37653 6.53637 6.82883 6.95368 7.08190 7.36457 7.40181 7.43663 7.55575 7.88858 8.18417 8.24957 8.84729 8.99044 9.53775 11.00844 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.008329 B = 0.002986 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.817561 B = 9374.385366 C =11749.776458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.353 6.353 3 C 0.436 3.564 4 O -0.502 6.502 5 C 0.139 3.861 6 H 0.126 0.874 7 N -0.633 5.633 8 C 0.030 3.970 9 C 0.511 3.489 10 O -0.517 6.517 11 N -0.597 5.597 12 C 0.246 3.754 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.118 3.882 22 C -0.052 4.052 23 C 0.217 3.783 24 N -0.446 5.446 25 C -0.074 4.074 26 C -0.088 4.088 27 C -0.121 4.121 28 C -0.116 4.116 29 C -0.124 4.124 30 C -0.098 4.098 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.365 0.635 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 -21.573 6.555 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.268 6.268 3 C 0.276 3.724 4 O -0.389 6.389 5 C 0.026 3.974 6 H 0.144 0.856 7 N -0.267 5.267 8 C -0.102 4.102 9 C 0.297 3.703 10 O -0.391 6.391 11 N -0.330 5.330 12 C 0.127 3.873 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.009 4.009 22 C -0.093 4.093 23 C -0.101 4.101 24 N -0.123 5.123 25 C -0.074 4.074 26 C -0.106 4.106 27 C -0.139 4.139 28 C -0.134 4.134 29 C -0.142 4.142 30 C -0.116 4.116 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.189 0.811 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.188 -21.610 5.678 24.159 hybrid contribution -0.064 0.563 -0.029 0.567 sum -9.252 -21.047 5.649 23.675 Atomic orbital electron populations 1.23286 0.76549 1.03682 1.02596 1.86556 1.23290 1.33354 1.83587 1.25228 0.93319 0.81777 0.72077 1.90706 1.66710 1.36311 1.45181 1.20357 0.84793 0.92614 0.99641 0.85638 1.60607 1.55784 0.99668 1.10614 1.22125 1.01407 0.95873 0.90832 1.19998 0.78697 0.87082 0.84565 1.90707 1.48491 1.70679 1.29247 1.48189 1.66071 1.14830 1.03899 1.19347 0.95141 0.73939 0.98829 1.21419 0.91877 0.92663 1.50698 0.92308 1.24912 0.98512 0.95542 0.95012 1.69917 1.35603 0.97737 1.50049 0.86515 0.85348 0.77749 0.77943 1.20699 1.21134 1.19814 1.21299 0.92048 0.98742 0.88784 1.19923 1.00006 1.02307 0.87095 1.29176 0.93085 0.93195 0.94640 1.81271 1.09013 1.10161 1.11862 1.19202 1.00899 0.94302 0.93039 1.21022 0.98175 0.99562 0.91871 1.21151 0.99048 0.95182 0.98541 1.21194 0.99292 0.95094 0.97791 1.21071 1.00359 1.00012 0.92715 1.20945 0.97834 0.93851 0.98968 0.91876 0.91871 0.88114 0.81144 0.87996 0.92109 0.94728 0.93537 0.92689 0.88600 0.90792 0.87689 0.86389 0.85695 0.85877 0.86145 0.85943 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.49 10.48 -39.26 -0.41 -3.91 16 3 C 0.44 4.93 7.07 36.01 0.25 5.18 16 4 O -0.50 -6.89 15.05 -18.75 -0.28 -7.17 16 5 C 0.14 1.47 2.70 -70.02 -0.19 1.28 16 6 H 0.13 1.05 7.66 -51.93 -0.40 0.66 16 7 N -0.63 -8.46 5.17 -110.45 -0.57 -9.03 16 8 C 0.03 0.39 4.41 -4.98 -0.02 0.37 16 9 C 0.51 9.42 7.71 -10.98 -0.08 9.34 16 10 O -0.52 -11.98 15.78 5.56 0.09 -11.90 16 11 N -0.60 -10.88 2.46 -175.06 -0.43 -11.31 16 12 C 0.25 5.82 5.16 -5.19 -0.03 5.80 16 13 C -0.53 -14.10 9.39 -34.44 -0.32 -14.42 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 17 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 22 C -0.05 -0.56 6.03 -29.52 -0.18 -0.73 16 23 C 0.22 2.65 15.44 -20.71 -0.32 2.33 16 24 N -0.45 -6.56 18.55 42.22 0.78 -5.78 16 25 C -0.07 -0.78 4.88 -104.62 -0.51 -1.29 16 26 C -0.09 -0.99 9.32 -39.58 -0.37 -1.36 16 27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 29 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 30 C -0.10 -0.89 9.67 -39.59 -0.38 -1.27 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.37 5.39 6.79 -39.29 -0.27 5.12 16 35 H 0.10 1.14 7.32 -51.93 -0.38 0.76 16 36 H 0.06 0.70 6.66 -51.93 -0.35 0.35 16 37 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 42 H 0.11 0.99 7.22 -51.93 -0.37 0.61 16 43 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.13 1.46 7.24 -52.49 -0.38 1.08 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 LS Contribution 418.51 15.07 6.31 6.31 Total: -1.00 -34.92 418.51 -7.83 -42.74 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.63 Total: 3.35 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.40 Total: 5.26 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.52 Total: -50.98 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.61 Total: -22.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.92 -7.83 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064844124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.742 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds