Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20827 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00242 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 60.00359 * 5 3 2 7 7 N 1.46901 * 109.47121 * 180.02562 * 5 3 2 8 8 C 1.46900 * 110.99890 * 274.99849 * 7 5 3 9 9 C 1.50698 * 109.47212 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00371 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99756 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99571 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47342 * 89.99800 * 12 11 9 14 14 H 1.08001 * 119.99999 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00376 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00112 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46947 * 89.99756 * 17 15 13 19 19 H 1.48493 * 109.47578 * 209.99873 * 17 15 13 20 20 H 1.48500 * 109.46993 * 330.00509 * 17 15 13 21 21 C 1.46497 * 120.00043 * 359.97438 * 11 9 8 22 22 C 1.52997 * 109.47065 * 90.00544 * 21 11 9 23 23 C 1.47198 * 109.47249 * 179.97438 * 22 21 11 24 24 N 7.43759 * 95.90447 * 300.75053 * 2 1 3 25 25 C 1.50701 * 109.47269 * 300.00444 * 5 3 2 26 26 C 1.38242 * 119.99675 * 279.72800 * 25 5 3 27 27 C 1.38235 * 119.99458 * 179.81160 * 26 25 5 28 28 C 1.38236 * 120.00304 * 0.38687 * 27 26 25 29 29 C 1.38242 * 119.99796 * 359.86995 * 28 27 26 30 30 C 1.38230 * 119.99958 * 359.94576 * 29 28 27 31 31 H 1.08999 * 109.46796 * 299.99226 * 1 2 3 32 32 H 1.09000 * 109.47771 * 59.99189 * 1 2 3 33 33 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 34 34 H 1.00898 * 111.00476 * 38.95239 * 7 5 3 35 35 H 1.09002 * 109.47391 * 300.00224 * 8 7 5 36 36 H 1.09005 * 109.47266 * 59.99895 * 8 7 5 37 37 H 1.08997 * 109.46940 * 209.99731 * 12 11 9 38 38 H 1.09001 * 109.47255 * 329.99613 * 12 11 9 39 39 H 0.96996 * 120.00470 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47083 * 210.00264 * 21 11 9 41 41 H 1.08999 * 109.47276 * 329.99876 * 21 11 9 42 42 H 1.09003 * 109.46942 * 299.99806 * 22 21 11 43 43 H 1.08999 * 109.47619 * 59.99542 * 22 21 11 44 44 H 1.07997 * 120.00052 * 359.97438 * 26 25 5 45 45 H 1.08000 * 119.99878 * 180.22948 * 27 26 25 46 46 H 1.08004 * 120.00024 * 179.83199 * 28 27 26 47 47 H 1.08000 * 119.99869 * 179.97438 * 29 28 27 48 48 H 1.07999 * 119.99817 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 7 3.9828 2.6836 0.0002 8 6 4.0168 3.2232 -1.3657 9 6 4.4467 4.6670 -1.3249 10 8 4.7002 5.1945 -0.2627 11 7 4.5494 5.3721 -2.4690 12 6 4.9678 6.7755 -2.4293 13 6 6.4686 6.8557 -2.5411 14 1 7.0523 5.9517 -2.6329 15 6 7.0963 8.0831 -2.5271 16 7 6.3854 9.1841 -2.4168 17 14 8.9566 8.1825 -2.6648 18 1 9.3425 8.2794 -4.0956 19 1 9.4434 9.3827 -1.9385 20 1 9.5628 6.9643 -2.0702 21 6 4.2437 4.7348 -3.7522 22 6 2.7590 4.9193 -4.0723 23 6 2.4520 4.2795 -5.3619 24 7 2.2171 3.7827 -6.3580 25 6 4.1057 0.5914 1.2295 26 6 4.1111 1.2547 2.4424 27 6 4.6023 0.6263 3.5714 28 6 5.0954 -0.6623 3.4861 29 6 5.0948 -1.3235 2.2720 30 6 4.6001 -0.6966 1.1438 31 1 -0.3633 0.5137 0.8901 32 1 -0.3635 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.3831 3.2378 0.5929 35 1 4.7240 2.6500 -1.9654 36 1 3.0236 3.1526 -1.8092 37 1 4.5124 7.3141 -3.2604 38 1 4.6492 7.2233 -1.4880 39 1 6.8270 10.0477 -2.4074 40 1 4.8445 5.1932 -4.5378 41 1 4.4734 3.6709 -3.6933 42 1 2.1583 4.4609 -3.2868 43 1 2.5294 5.9832 -4.1312 44 1 3.7292 2.2627 2.5083 45 1 4.6031 1.1430 4.5198 46 1 5.4816 -1.1522 4.3677 47 1 5.4804 -2.3301 2.2052 48 1 4.5993 -1.2133 0.1955 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064844124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = -76.193034 kcal Electronic energy + Delta-G solvation = -31857.771926 eV Core-core repulsion = 27491.561933 eV Total energy + Delta-G solvation = -4366.209993 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.94735 -40.72193 -39.95408 -38.08136 -37.86368 -36.77681 -36.37609 -34.84543 -32.81384 -32.14995 -31.72767 -29.89658 -29.20411 -27.92039 -26.07043 -25.31302 -24.16916 -23.33811 -23.11297 -21.46291 -20.10691 -19.09021 -18.80779 -18.42409 -18.26128 -17.99442 -17.70734 -17.28711 -17.03465 -16.46637 -16.16181 -15.96102 -15.83326 -15.66880 -15.29194 -14.92520 -14.84233 -14.45362 -14.36601 -14.31258 -14.15773 -13.96305 -13.60746 -13.55046 -13.54584 -13.42680 -13.19341 -13.13703 -12.92156 -12.88018 -12.71400 -12.49505 -12.16526 -12.09697 -11.93606 -11.85555 -11.81406 -11.77273 -11.65338 -10.58622 -10.56491 -9.82830 -9.72716 -9.62136 -9.45315 -8.16139 -6.28255 0.38217 0.58062 1.02886 1.40979 1.43782 1.53175 1.64473 1.67051 1.80027 1.90100 2.20868 2.45014 2.80257 3.05227 3.15535 3.20458 3.58085 3.72739 3.81537 3.88502 4.01608 4.09728 4.21737 4.23912 4.27264 4.30012 4.31520 4.37552 4.40580 4.57472 4.68354 4.70031 4.77825 4.81482 5.03541 5.05630 5.09864 5.21242 5.27056 5.34583 5.48528 5.62006 5.63234 5.68987 5.76011 5.90213 5.97964 6.14812 6.15845 6.57211 6.58689 6.75385 6.83144 7.36186 7.53186 8.90685 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.008329 B = 0.002986 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.817561 B = 9374.385366 C =11749.776458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.441 3.559 4 O -0.533 6.533 5 C 0.143 3.857 6 H 0.155 0.845 7 N -0.649 5.649 8 C 0.043 3.957 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.598 5.598 12 C 0.261 3.739 13 C -0.538 4.538 14 H 0.055 0.945 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.113 3.887 22 C -0.039 4.039 23 C 0.245 3.755 24 N -0.485 5.485 25 C -0.087 4.087 26 C -0.113 4.113 27 C -0.136 4.136 28 C -0.119 4.119 29 C -0.125 4.125 30 C -0.100 4.100 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.353 0.647 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.130 0.870 46 H 0.143 0.857 47 H 0.150 0.850 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 -24.887 5.631 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C 0.282 3.718 4 O -0.422 6.422 5 C 0.031 3.969 6 H 0.173 0.827 7 N -0.281 5.281 8 C -0.088 4.088 9 C 0.292 3.708 10 O -0.454 6.454 11 N -0.329 5.329 12 C 0.140 3.860 13 C -0.577 4.577 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.011 4.011 22 C -0.080 4.080 23 C -0.072 4.072 24 N -0.163 5.163 25 C -0.088 4.088 26 C -0.132 4.132 27 C -0.154 4.154 28 C -0.137 4.137 29 C -0.142 4.142 30 C -0.118 4.118 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.151 0.849 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.124 0.876 45 H 0.148 0.852 46 H 0.161 0.839 47 H 0.168 0.832 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.746 -24.984 4.708 26.886 hybrid contribution -0.257 1.536 0.332 1.592 sum -9.003 -23.448 5.040 25.618 Atomic orbital electron populations 1.23543 0.75185 1.05669 1.02307 1.86539 1.24604 1.32407 1.83077 1.25308 0.93568 0.81698 0.71186 1.90697 1.67395 1.37342 1.46778 1.20427 0.84477 0.91029 1.00971 0.82743 1.60591 1.56193 1.01010 1.10355 1.22091 1.03177 0.91953 0.91614 1.20954 0.77348 0.89021 0.83455 1.90679 1.51035 1.72304 1.31388 1.48056 1.65716 1.13034 1.06092 1.18790 0.93736 0.77184 0.96296 1.21756 0.93461 0.92506 1.49955 0.92660 1.25735 1.02914 0.95374 0.94872 1.70028 1.37322 0.98195 1.51192 0.85545 0.80112 0.77422 0.78520 1.19163 1.21150 1.19804 1.21545 0.93443 1.00171 0.85985 1.19818 0.98580 1.02614 0.87011 1.29142 0.91891 0.92043 0.94129 1.81314 1.10320 1.11639 1.13031 1.19297 1.01707 0.95166 0.92583 1.21056 0.99674 0.99276 0.93182 1.21350 0.99376 0.96096 0.98528 1.21519 0.98585 0.94532 0.99070 1.21463 0.99427 1.01111 0.92225 1.21263 0.96980 0.93150 1.00395 0.92548 0.91854 0.85009 0.82554 0.84944 0.89709 0.94785 0.98018 0.92633 0.89379 0.87283 0.85478 0.86228 0.87594 0.85189 0.83923 0.83206 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.23 10.48 -51.42 -0.54 -6.77 16 3 C 0.44 9.36 7.07 71.24 0.50 9.87 16 4 O -0.53 -14.37 15.05 21.96 0.33 -14.04 16 5 C 0.14 2.78 2.70 43.42 0.12 2.90 16 6 H 0.16 2.02 7.66 -2.39 -0.02 2.00 16 7 N -0.65 -16.97 5.17 -503.37 -2.60 -19.57 16 8 C 0.04 1.05 4.41 85.56 0.38 1.43 16 9 C 0.50 18.61 7.71 87.66 0.68 19.28 16 10 O -0.58 -27.89 15.78 -3.03 -0.05 -27.94 16 11 N -0.60 -21.64 2.46 -826.15 -2.03 -23.67 16 12 C 0.26 12.75 5.16 85.63 0.44 13.19 16 13 C -0.54 -29.23 9.39 25.60 0.24 -28.99 16 14 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.56 5.46 84.65 0.46 1.02 16 16 N -0.93 -54.33 13.29 21.44 0.28 -54.05 16 17 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.11 2.76 5.17 86.38 0.45 3.20 16 22 C -0.04 -0.75 6.03 28.79 0.17 -0.58 16 23 C 0.25 5.43 15.44 89.42 1.38 6.81 16 24 N -0.48 -13.42 18.55 20.02 0.37 -13.04 16 25 C -0.09 -1.74 4.88 -19.86 -0.10 -1.84 16 26 C -0.11 -2.60 9.32 22.27 0.21 -2.40 16 27 C -0.14 -2.64 10.05 22.27 0.22 -2.41 16 28 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 29 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 30 C -0.10 -1.53 9.67 22.27 0.22 -1.32 16 31 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 32 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.35 10.81 6.79 -89.70 -0.61 10.20 16 35 H 0.13 2.44 7.32 -2.39 -0.02 2.42 16 36 H 0.09 1.69 6.66 -2.38 -0.02 1.67 16 37 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.09 2.33 8.07 -2.39 -0.02 2.31 16 41 H 0.11 1.92 6.44 -2.39 -0.02 1.91 16 42 H 0.13 1.99 7.22 -2.39 -0.02 1.97 16 43 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.11 2.73 7.24 -2.91 -0.02 2.71 16 45 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 47 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 48 H 0.15 1.47 8.04 -2.91 -0.02 1.45 16 Total: -1.00 -79.69 418.51 5.19 -74.50 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.39 Total: 20.01 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 7.01 Total: 18.57 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -3.98 Total: -110.33 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -0.26 Total: -48.75 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -79.69 5.19 -74.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064844124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.690 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds