Wall clock time and date at job start Tue Mar 31 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99951 * 2 1 4 4 C 1.50694 * 109.47396 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99691 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00219 * 180.02562 * 4 3 2 7 7 C 1.47086 * 120.88070 * 180.02562 * 6 4 3 8 8 C 1.53246 * 108.51814 * 231.16009 * 7 6 4 9 9 N 1.46902 * 109.33711 * 306.16785 * 8 7 6 10 10 C 1.38109 * 110.99515 * 187.25142 * 9 8 7 11 11 N 1.32855 * 120.81416 * 235.41571 * 10 9 8 12 12 C 1.32131 * 121.19540 * 179.69650 * 11 10 9 13 13 N 1.31505 * 122.64294 * 0.64628 * 12 11 10 14 14 C 1.33201 * 120.68216 * 359.66114 * 13 12 11 15 15 C 1.40813 * 120.81033 * 55.70513 * 10 9 8 16 16 C 1.41166 * 134.70227 * 0.02562 * 15 10 9 17 17 N 1.30252 * 108.47014 * 179.97438 * 16 15 10 18 18 N 1.36313 * 134.61284 * 180.02562 * 14 13 12 19 19 C 1.46499 * 125.87622 * 0.02562 * 18 14 13 20 20 C 1.50692 * 109.47251 * 90.00038 * 19 18 14 21 21 H 1.08003 * 120.00211 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00190 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99864 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00045 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47158 * 89.99742 * 24 22 20 26 26 H 1.48502 * 109.47195 * 209.99531 * 24 22 20 27 27 H 1.48502 * 109.47500 * 329.99704 * 24 22 20 28 28 C 1.46905 * 111.26950 * 63.11028 * 9 8 7 29 29 C 1.47077 * 120.88322 * 359.97189 * 6 4 3 30 30 H 1.08994 * 109.47006 * 60.00432 * 1 2 3 31 31 H 1.09003 * 109.46639 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46983 * 299.99599 * 1 2 3 33 33 H 1.09007 * 109.46939 * 59.99797 * 3 2 1 34 34 H 1.09001 * 109.46692 * 300.00206 * 3 2 1 35 35 H 1.08995 * 109.62590 * 350.86768 * 7 6 4 36 36 H 1.09001 * 109.62973 * 111.45087 * 7 6 4 37 37 H 1.08998 * 109.49282 * 66.12711 * 8 7 6 38 38 H 1.09001 * 109.48895 * 186.20865 * 8 7 6 39 39 H 1.07996 * 118.67661 * 180.28094 * 12 11 10 40 40 H 1.08000 * 125.76564 * 359.96392 * 16 15 10 41 41 H 1.08999 * 109.47007 * 210.00451 * 19 18 14 42 42 H 1.09003 * 109.46553 * 329.99903 * 19 18 14 43 43 H 0.97001 * 120.00048 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.49314 * 176.93241 * 28 9 8 45 45 H 1.09000 * 109.49217 * 56.84795 * 28 9 8 46 46 H 1.08997 * 109.63136 * 248.55193 * 29 6 4 47 47 H 1.09010 * 109.62363 * 9.13571 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0013 7 6 5.7443 2.2033 0.0013 8 6 6.2879 3.0812 1.1337 9 7 5.7522 4.4420 0.9942 10 6 6.3437 5.3018 1.8987 11 7 5.6059 6.0139 2.7434 12 6 6.1641 6.8343 3.6159 13 7 7.4654 7.0064 3.6956 14 6 8.2897 6.3417 2.8875 15 6 7.7433 5.4496 1.9441 16 6 8.8247 4.8897 1.2300 17 7 9.9318 5.3939 1.6954 18 7 9.6424 6.2987 2.7247 19 6 10.6246 7.0663 3.4943 20 6 11.0421 6.2751 4.7070 21 1 10.6185 5.2980 4.8863 22 6 11.9648 6.7986 5.5876 23 7 12.4810 7.9882 5.3690 24 14 12.4817 5.8181 7.0912 25 1 13.6548 4.9731 6.7519 26 1 12.8441 6.7500 8.1893 27 1 11.3574 4.9519 7.5279 28 6 4.2898 4.4558 1.1336 29 6 3.6644 3.6343 0.0007 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 6.0451 1.1684 0.1638 36 1 6.1337 2.5552 -0.9540 37 1 5.9821 2.6666 2.0942 38 1 7.3762 3.1114 1.0799 39 1 5.5258 7.3901 4.2866 40 1 8.7471 4.1655 0.4326 41 1 11.4974 7.2661 2.8727 42 1 10.1806 8.0100 3.8112 43 1 13.1305 8.3564 5.9883 44 1 3.9291 5.4830 1.0799 45 1 4.0119 4.0220 2.0941 46 1 3.8542 4.1234 -0.9546 47 1 2.5901 3.5453 0.1628 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:53 Heat of formation + Delta-G solvation = 69.448519 kcal Electronic energy + Delta-G solvation = -31974.608258 eV Core-core repulsion = 27581.580597 eV Total energy + Delta-G solvation = -4393.027661 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.170 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.79597 -40.63458 -39.17346 -38.19406 -37.55879 -35.41887 -33.81764 -32.57174 -32.05942 -31.27012 -30.36729 -29.27671 -27.55720 -27.25379 -26.22510 -24.55084 -23.70282 -23.35128 -22.64082 -21.69371 -20.36684 -19.48582 -18.11155 -17.73842 -17.32664 -16.90366 -16.74626 -16.73196 -16.45141 -15.87042 -15.54134 -15.36880 -15.21083 -14.87828 -14.78074 -14.47989 -14.34314 -14.03452 -13.62759 -13.53128 -13.37558 -13.02553 -12.70193 -12.62333 -12.26321 -12.03725 -11.94576 -11.83090 -11.70279 -11.57101 -11.27801 -11.11579 -10.98035 -10.84117 -10.34873 -10.28906 -10.27668 -10.09278 -9.89324 -9.50209 -9.06830 -8.92485 -8.65681 -8.45947 -7.97456 -6.27856 -4.34869 0.91852 1.64811 2.20105 2.23974 2.81451 2.86954 3.18942 3.20724 3.26627 3.31871 3.41978 4.06546 4.11811 4.20732 4.27372 4.38411 4.52985 4.56873 4.58081 4.62479 4.71552 4.78247 4.84224 4.85298 4.89600 4.96320 4.98747 5.07721 5.13458 5.21401 5.26026 5.36014 5.42216 5.55375 5.60562 5.62355 5.93835 6.14898 6.25895 6.48788 6.51753 6.87163 6.94441 6.95718 7.00263 7.18561 7.55774 7.72378 7.76572 7.83425 8.05264 8.52974 8.68268 9.30584 10.80369 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002056 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.641143 B =13613.040922 C =13902.918509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.517 3.483 5 O -0.518 6.518 6 N -0.616 5.616 7 C 0.119 3.881 8 C 0.042 3.958 9 N -0.469 5.469 10 C 0.431 3.569 11 N -0.598 5.598 12 C 0.350 3.650 13 N -0.531 5.531 14 C 0.352 3.648 15 C -0.297 4.297 16 C 0.068 3.932 17 N -0.232 5.232 18 N -0.330 5.330 19 C 0.262 3.738 20 C -0.536 4.536 21 H 0.061 0.939 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.273 1.273 28 C 0.051 3.949 29 C 0.107 3.893 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.198 0.802 40 H 0.189 0.811 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.268 0.732 44 H 0.106 0.894 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.719 -8.346 -12.496 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.305 3.695 5 O -0.392 6.392 6 N -0.353 5.353 7 C -0.004 4.004 8 C -0.085 4.085 9 N -0.187 5.187 10 C 0.181 3.819 11 N -0.323 5.323 12 C 0.056 3.944 13 N -0.253 5.253 14 C 0.103 3.897 15 C -0.313 4.313 16 C -0.127 4.127 17 N -0.048 5.048 18 N -0.116 5.116 19 C 0.146 3.854 20 C -0.574 4.574 21 H 0.080 0.920 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.198 1.198 28 C -0.077 4.077 29 C -0.016 4.016 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.214 0.786 40 H 0.206 0.794 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.085 -8.204 -12.287 26.571 hybrid contribution -0.374 -0.537 1.129 1.306 sum -22.459 -8.741 -11.158 26.558 Atomic orbital electron populations 1.22856 0.80171 1.03462 1.00211 1.88023 1.19942 1.25135 1.95421 1.22283 0.91604 0.87099 1.02627 1.20241 0.88733 0.84054 0.76515 1.90743 1.74405 1.26060 1.48010 1.48155 1.07006 1.05888 1.74234 1.21772 0.78451 1.01382 0.98769 1.22815 1.01818 0.84906 0.98916 1.58556 1.07104 1.08275 1.44732 1.19328 0.87401 0.89930 0.85250 1.68291 1.39929 1.14988 1.09060 1.24517 0.87512 0.90431 0.91953 1.67526 1.04102 1.27196 1.26451 1.19031 0.87357 0.91952 0.91333 1.19668 0.94281 1.10168 1.07188 1.23563 0.88085 1.00825 1.00262 1.76998 1.23084 1.03754 1.00923 1.49555 1.02539 1.32798 1.26724 1.19848 0.85637 0.90252 0.89675 1.21218 1.25386 1.03746 1.07079 0.92046 1.24897 0.95390 0.95108 0.98237 1.69911 1.29146 1.16084 1.37588 0.86333 0.78980 0.79650 0.81570 1.20267 1.20758 1.19780 1.22434 0.85107 1.02390 0.97730 1.22041 0.97582 0.81930 1.00095 0.93713 0.88995 0.93682 0.90071 0.90072 0.87691 0.89796 0.92534 0.87588 0.78601 0.79412 0.92606 0.92190 0.92183 0.87572 0.92258 0.89753 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.51 10.24 -55.14 -0.56 -4.07 16 3 C 0.04 0.30 4.78 36.00 0.17 0.48 16 4 C 0.52 5.25 7.78 -10.99 -0.09 5.17 16 5 O -0.52 -7.60 15.95 -14.36 -0.23 -7.83 16 6 N -0.62 -5.05 3.01 -172.43 -0.52 -5.57 16 7 C 0.12 1.01 6.60 -3.59 -0.02 0.98 16 8 C 0.04 0.41 5.40 -3.70 -0.02 0.39 16 9 N -0.47 -5.03 4.65 -172.47 -0.80 -5.84 16 10 C 0.43 6.22 6.43 -154.85 -1.00 5.22 16 11 N -0.60 -8.63 8.82 -13.62 -0.12 -8.75 16 12 C 0.35 5.44 12.24 -92.11 -1.13 4.31 16 13 N -0.53 -10.63 10.47 -13.97 -0.15 -10.78 16 14 C 0.35 7.42 8.04 -156.23 -1.26 6.16 16 15 C -0.30 -5.11 5.73 -106.82 -0.61 -5.73 16 16 C 0.07 1.10 10.67 -17.11 -0.18 0.91 16 17 N -0.23 -4.76 12.45 30.80 0.38 -4.38 16 18 N -0.33 -7.61 3.63 -61.65 -0.22 -7.83 16 19 C 0.26 6.82 6.19 -5.20 -0.03 6.78 16 20 C -0.54 -14.96 9.39 -34.44 -0.32 -15.29 16 21 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 22 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 23 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 24 Si 0.91 21.41 29.54 -169.99 -5.02 16.38 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 28 C 0.05 0.42 4.85 -3.68 -0.02 0.40 16 29 C 0.11 0.60 6.51 -3.58 -0.02 0.58 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.39 7.66 -51.92 -0.40 -0.01 16 34 H 0.08 0.34 8.00 -51.93 -0.42 -0.07 16 35 H 0.10 0.99 7.06 -51.93 -0.37 0.62 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.11 1.04 4.94 -51.93 -0.26 0.78 16 39 H 0.20 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.19 2.14 6.91 -52.49 -0.36 1.77 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.27 6.02 -51.92 -0.31 -0.04 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -35.90 390.15 -10.42 -46.32 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.28 Total: -2.37 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -3.51 Total: 13.41 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.69 Total: -67.72 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.79 Total: -11.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.90 -10.42 -46.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.768 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds