Wall clock time and date at job start Tue Mar 31 2020 05:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00182 * 2 1 4 4 O 1.21282 * 119.99489 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00179 * 179.97438 * 3 2 1 6 6 N 1.46905 * 109.47178 * 186.27416 * 5 3 2 7 7 C 1.46961 * 110.99643 * 66.37443 * 6 5 3 8 8 C 1.53055 * 109.36166 * 183.18935 * 7 6 5 9 9 N 1.46951 * 109.36254 * 301.59771 * 8 7 6 10 10 C 1.38111 * 110.99761 * 183.19208 * 9 8 7 11 11 N 1.32861 * 120.81323 * 0.66320 * 10 9 8 12 12 C 1.32123 * 121.19558 * 179.91532 * 11 10 9 13 13 N 1.31509 * 122.64360 * 359.63363 * 12 11 10 14 14 C 1.33194 * 120.68350 * 359.97438 * 13 12 11 15 15 C 1.40813 * 120.81297 * 179.97438 * 10 9 8 16 16 C 1.41174 * 134.69933 * 359.97438 * 15 10 9 17 17 N 1.30247 * 108.46944 * 179.97438 * 16 15 10 18 18 N 1.36315 * 134.61847 * 179.97438 * 14 13 12 19 19 C 1.46504 * 125.86829 * 0.04055 * 18 14 13 20 20 C 1.50706 * 109.46799 * 269.71376 * 19 18 14 21 21 H 1.07997 * 119.99928 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99854 * 179.72840 * 20 19 18 23 23 N 1.31516 * 119.99742 * 0.27183 * 22 20 19 24 24 Si 1.86800 * 119.99982 * 180.27789 * 22 20 19 25 25 H 1.48496 * 109.47169 * 89.99729 * 24 22 20 26 26 H 1.48502 * 109.47055 * 209.99992 * 24 22 20 27 27 H 1.48500 * 109.46828 * 329.99353 * 24 22 20 28 28 C 1.46953 * 110.88500 * 59.31879 * 9 8 7 29 29 C 1.46954 * 111.00166 * 190.16976 * 6 5 3 30 30 H 1.08993 * 109.47366 * 300.00176 * 1 2 3 31 31 H 1.08999 * 109.47255 * 60.00272 * 1 2 3 32 32 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00129 * 179.97438 * 2 1 3 34 34 H 1.09010 * 109.47375 * 66.27714 * 5 3 2 35 35 H 1.08995 * 109.47596 * 306.27487 * 5 3 2 36 36 H 1.08996 * 109.48790 * 63.22093 * 7 6 5 37 37 H 1.09001 * 109.48587 * 303.15109 * 7 6 5 38 38 H 1.08996 * 109.48665 * 181.62553 * 8 7 6 39 39 H 1.08996 * 109.50661 * 61.57597 * 8 7 6 40 40 H 1.07996 * 118.68041 * 179.61064 * 12 11 10 41 41 H 1.08005 * 125.76329 * 0.02562 * 16 15 10 42 42 H 1.08996 * 109.47095 * 149.71958 * 19 18 14 43 43 H 1.08994 * 109.47651 * 29.70997 * 19 18 14 44 44 H 0.97003 * 119.99502 * 179.97438 * 23 22 20 45 45 H 1.09007 * 109.48672 * 60.64791 * 28 9 8 46 46 H 1.08999 * 109.48925 * 180.70680 * 28 9 8 47 47 H 1.09003 * 109.49043 * 296.78541 * 29 6 5 48 48 H 1.09004 * 109.48838 * 56.84536 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 7 4.1354 2.5440 0.1518 7 6 3.7921 3.0826 1.4754 8 6 4.2481 4.5409 1.5637 9 7 5.6969 4.6134 1.3284 10 6 6.1572 5.9078 1.4707 11 7 5.3273 6.8935 1.7944 12 6 5.7597 8.1341 1.9341 13 7 7.0213 8.4682 1.7715 14 6 7.9320 7.5498 1.4533 15 6 7.5200 6.2126 1.2903 16 6 8.6710 5.4620 0.9666 17 7 9.6928 6.2689 0.9292 18 7 9.2752 7.5732 1.2222 19 6 10.1351 8.7580 1.2772 20 6 10.1940 9.3996 -0.0852 21 1 9.6454 8.9682 -0.9094 22 6 10.9433 10.5409 -0.2780 23 7 11.6110 11.0664 0.7259 24 14 11.0101 11.3406 -1.9648 25 1 9.9161 12.3378 -2.0835 26 1 12.3195 12.0190 -2.1395 27 1 10.8478 10.3006 -3.0123 28 6 6.0403 4.0748 0.0050 29 6 5.5842 2.6165 -0.0833 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8401 0.0004 34 1 4.0096 0.7535 -0.9401 35 1 4.0089 0.5594 0.8293 36 1 4.2925 2.4976 2.2470 37 1 2.7131 3.0296 1.6207 38 1 4.0204 4.9337 2.5545 39 1 3.7273 5.1314 0.8099 40 1 5.0486 8.9050 2.1919 41 1 8.6994 4.3985 0.7804 42 1 11.1389 8.4645 1.5841 43 1 9.7285 9.4691 1.9963 44 1 12.1384 11.8691 0.5901 45 1 5.5399 4.6597 -0.7668 46 1 7.1193 4.1279 -0.1404 47 1 6.1051 2.0263 0.6706 48 1 5.8119 2.2237 -1.0743 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065534371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:39 Heat of formation + Delta-G solvation = 115.306640 kcal Electronic energy + Delta-G solvation = -31804.298094 eV Core-core repulsion = 27510.977652 eV Total energy + Delta-G solvation = -4293.320442 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.65138 -40.37784 -39.33209 -38.15814 -35.98801 -34.92167 -33.78183 -32.48018 -31.71154 -30.98857 -30.44030 -29.10756 -27.31388 -26.95159 -24.80036 -24.38149 -23.26483 -23.18116 -22.28056 -20.89035 -20.40652 -19.91086 -17.76384 -17.58761 -17.48675 -16.77779 -16.68170 -16.24817 -16.02196 -15.42123 -15.10666 -15.07739 -14.94144 -14.87052 -14.58829 -14.19935 -14.02711 -13.86003 -13.50117 -13.40915 -13.36362 -12.88079 -12.72923 -12.35425 -12.22315 -12.13571 -11.74735 -11.51411 -11.31609 -11.26351 -11.17381 -10.98956 -10.87176 -10.73350 -10.30211 -10.18100 -10.13179 -9.81351 -9.55751 -9.28155 -8.78637 -8.68261 -8.61122 -8.32881 -7.86285 -6.23342 -4.30047 1.04780 1.77975 2.28259 2.64836 2.90919 2.96777 3.24176 3.29709 3.34900 3.39357 3.57226 4.23546 4.31338 4.31868 4.39770 4.54948 4.65858 4.71744 4.76911 4.82047 4.85246 4.97926 5.02374 5.07229 5.09418 5.12314 5.19945 5.24110 5.32554 5.35717 5.45648 5.51820 5.65799 5.71955 5.79227 5.95052 5.98006 6.28610 6.39257 6.49907 6.63270 6.71109 7.00441 7.04351 7.05883 7.11760 7.30937 7.64326 7.80172 7.86757 7.88844 8.14546 8.64501 8.74427 9.35114 10.84884 Molecular weight = 359.18amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.001975 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.066499 B =14171.032528 C =14341.250841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.514 6.514 5 C 0.037 3.963 6 N -0.524 5.524 7 C 0.053 3.947 8 C 0.072 3.928 9 N -0.473 5.473 10 C 0.433 3.567 11 N -0.595 5.595 12 C 0.351 3.649 13 N -0.534 5.534 14 C 0.352 3.648 15 C -0.298 4.298 16 C 0.069 3.931 17 N -0.235 5.235 18 N -0.331 5.331 19 C 0.263 3.737 20 C -0.534 4.534 21 H 0.061 0.939 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.907 3.093 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.273 1.273 28 C 0.060 3.940 29 C 0.059 3.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.197 0.803 41 H 0.188 0.812 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.268 0.732 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.050 0.950 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.506 -25.416 0.354 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.395 5.395 3 C 0.295 3.705 4 O -0.388 6.388 5 C -0.094 4.094 6 N -0.249 5.249 7 C -0.075 4.075 8 C -0.054 4.054 9 N -0.191 5.191 10 C 0.183 3.817 11 N -0.320 5.320 12 C 0.057 3.943 13 N -0.256 5.256 14 C 0.103 3.897 15 C -0.314 4.314 16 C -0.127 4.127 17 N -0.051 5.051 18 N -0.118 5.118 19 C 0.146 3.854 20 C -0.573 4.573 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.198 1.198 28 C -0.066 4.066 29 C -0.069 4.069 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.213 0.787 41 H 0.204 0.796 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.068 0.932 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.933 -23.498 0.422 29.562 hybrid contribution 0.102 -0.646 -0.772 1.011 sum -17.831 -24.143 -0.350 30.016 Atomic orbital electron populations 1.21513 0.79476 1.02129 1.02440 1.45821 1.07848 1.08719 1.77091 1.20634 0.90041 0.83693 0.76144 1.90735 1.69967 1.30984 1.47118 1.21936 0.92319 0.91587 1.03543 1.61844 1.13782 1.17995 1.31275 1.22400 1.02080 0.94996 0.88044 1.22054 0.84259 0.95501 1.03620 1.58827 1.16738 1.14673 1.28833 1.19379 0.87587 0.87841 0.86913 1.68332 1.37673 1.01162 1.24861 1.24529 0.89324 0.91091 0.89400 1.67528 1.01589 1.36466 1.20035 1.19025 0.87611 0.89268 0.93779 1.19678 0.95054 0.96450 1.20249 1.23526 0.88480 0.99617 1.01030 1.76961 1.23282 0.88456 1.16362 1.49501 1.03170 1.07080 1.52059 1.19825 0.89209 0.77054 0.99285 1.21236 1.30794 1.10711 0.94568 0.92034 1.24900 0.94669 0.96292 0.97799 1.69920 1.30236 1.21665 1.30993 0.86338 0.77592 0.79405 0.83229 1.20262 1.20808 1.19763 1.22415 1.02306 0.94835 0.87036 1.22231 0.86732 0.96040 1.01928 0.92233 0.92187 0.90738 0.76609 0.87532 0.91798 0.94228 0.88612 0.88871 0.91624 0.78652 0.79577 0.92684 0.92237 0.92234 0.92142 0.88461 0.93200 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 10.70 59.85 0.64 1.04 16 2 N -0.74 -3.57 5.71 -67.09 -0.38 -3.95 16 3 C 0.51 4.14 7.39 -10.99 -0.08 4.06 16 4 O -0.51 -6.55 14.68 5.56 0.08 -6.47 16 5 C 0.04 0.23 5.45 -4.98 -0.03 0.20 16 6 N -0.52 -4.79 4.40 -235.91 -1.04 -5.83 16 7 C 0.05 0.53 5.27 -3.76 -0.02 0.51 16 8 C 0.07 0.88 4.80 -3.77 -0.02 0.86 16 9 N -0.47 -6.15 4.73 -172.65 -0.82 -6.97 16 10 C 0.43 7.08 6.43 -154.85 -1.00 6.09 16 11 N -0.60 -9.91 8.87 -13.62 -0.12 -10.03 16 12 C 0.35 6.04 12.24 -92.12 -1.13 4.91 16 13 N -0.53 -11.37 10.47 -13.97 -0.15 -11.52 16 14 C 0.35 7.81 8.04 -156.23 -1.26 6.55 16 15 C -0.30 -5.53 5.75 -106.82 -0.61 -6.14 16 16 C 0.07 1.17 10.74 -17.11 -0.18 0.99 16 17 N -0.23 -5.00 12.45 30.80 0.38 -4.62 16 18 N -0.33 -7.93 3.63 -61.64 -0.22 -8.15 16 19 C 0.26 7.01 6.19 -5.19 -0.03 6.98 16 20 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 21 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 23 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 24 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 28 C 0.06 0.66 5.36 -3.77 -0.02 0.64 16 29 C 0.06 0.47 5.61 -3.77 -0.02 0.45 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.40 0.62 8.83 -40.82 -0.36 0.26 16 34 H 0.11 0.44 8.02 -51.92 -0.42 0.02 16 35 H 0.06 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 1.06 6.09 -51.93 -0.32 0.74 16 38 H 0.09 1.17 7.84 -51.93 -0.41 0.76 16 39 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.20 2.57 8.06 -52.49 -0.42 2.14 16 41 H 0.19 2.27 6.85 -52.48 -0.36 1.91 16 42 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 1.02 5.09 -51.93 -0.26 0.75 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -35.99 394.20 -11.52 -47.51 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.73 Total: -0.97 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: -4.18 Total: 13.36 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -1.61 Total: -76.06 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: 0.08 Total: -6.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.99 -11.52 -47.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.814 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds