Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00182 * 2 1 4 4 O 1.21282 * 119.99489 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00179 * 179.97438 * 3 2 1 6 6 N 1.46905 * 109.47178 * 186.27416 * 5 3 2 7 7 C 1.46961 * 110.99643 * 66.37443 * 6 5 3 8 8 C 1.53055 * 109.36166 * 183.18935 * 7 6 5 9 9 N 1.46951 * 109.36254 * 301.59771 * 8 7 6 10 10 C 1.38111 * 110.99761 * 183.19208 * 9 8 7 11 11 N 1.32861 * 120.81323 * 0.66320 * 10 9 8 12 12 C 1.32123 * 121.19558 * 179.91532 * 11 10 9 13 13 N 1.31509 * 122.64360 * 359.63363 * 12 11 10 14 14 C 1.33194 * 120.68350 * 359.97438 * 13 12 11 15 15 C 1.40813 * 120.81297 * 179.97438 * 10 9 8 16 16 C 1.41174 * 134.69933 * 359.97438 * 15 10 9 17 17 N 1.30247 * 108.46944 * 179.97438 * 16 15 10 18 18 N 1.36315 * 134.61847 * 179.97438 * 14 13 12 19 19 C 1.46504 * 125.86829 * 0.04055 * 18 14 13 20 20 C 1.50706 * 109.46799 * 269.71376 * 19 18 14 21 21 H 1.07997 * 119.99928 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99854 * 179.72840 * 20 19 18 23 23 N 1.31516 * 119.99742 * 0.27183 * 22 20 19 24 24 Si 1.86800 * 119.99982 * 180.27789 * 22 20 19 25 25 H 1.48496 * 109.47169 * 89.99729 * 24 22 20 26 26 H 1.48502 * 109.47055 * 209.99992 * 24 22 20 27 27 H 1.48500 * 109.46828 * 329.99353 * 24 22 20 28 28 C 1.46953 * 110.88500 * 59.31879 * 9 8 7 29 29 C 1.46954 * 111.00166 * 190.16976 * 6 5 3 30 30 H 1.08993 * 109.47366 * 300.00176 * 1 2 3 31 31 H 1.08999 * 109.47255 * 60.00272 * 1 2 3 32 32 H 1.08999 * 109.46906 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00129 * 179.97438 * 2 1 3 34 34 H 1.09010 * 109.47375 * 66.27714 * 5 3 2 35 35 H 1.08995 * 109.47596 * 306.27487 * 5 3 2 36 36 H 1.08996 * 109.48790 * 63.22093 * 7 6 5 37 37 H 1.09001 * 109.48587 * 303.15109 * 7 6 5 38 38 H 1.08996 * 109.48665 * 181.62553 * 8 7 6 39 39 H 1.08996 * 109.50661 * 61.57597 * 8 7 6 40 40 H 1.07996 * 118.68041 * 179.61064 * 12 11 10 41 41 H 1.08005 * 125.76329 * 0.02562 * 16 15 10 42 42 H 1.08996 * 109.47095 * 149.71958 * 19 18 14 43 43 H 1.08994 * 109.47651 * 29.70997 * 19 18 14 44 44 H 0.97003 * 119.99502 * 179.97438 * 23 22 20 45 45 H 1.09007 * 109.48672 * 60.64791 * 28 9 8 46 46 H 1.08999 * 109.48925 * 180.70680 * 28 9 8 47 47 H 1.09003 * 109.49043 * 296.78541 * 29 6 5 48 48 H 1.09004 * 109.48838 * 56.84536 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 7 4.1354 2.5440 0.1518 7 6 3.7921 3.0826 1.4754 8 6 4.2481 4.5409 1.5637 9 7 5.6969 4.6134 1.3284 10 6 6.1572 5.9078 1.4707 11 7 5.3273 6.8935 1.7944 12 6 5.7597 8.1341 1.9341 13 7 7.0213 8.4682 1.7715 14 6 7.9320 7.5498 1.4533 15 6 7.5200 6.2126 1.2903 16 6 8.6710 5.4620 0.9666 17 7 9.6928 6.2689 0.9292 18 7 9.2752 7.5732 1.2222 19 6 10.1351 8.7580 1.2772 20 6 10.1940 9.3996 -0.0852 21 1 9.6454 8.9682 -0.9094 22 6 10.9433 10.5409 -0.2780 23 7 11.6110 11.0664 0.7259 24 14 11.0101 11.3406 -1.9648 25 1 9.9161 12.3378 -2.0835 26 1 12.3195 12.0190 -2.1395 27 1 10.8478 10.3006 -3.0123 28 6 6.0403 4.0748 0.0050 29 6 5.5842 2.6165 -0.0833 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8401 0.0004 34 1 4.0096 0.7535 -0.9401 35 1 4.0089 0.5594 0.8293 36 1 4.2925 2.4976 2.2470 37 1 2.7131 3.0296 1.6207 38 1 4.0204 4.9337 2.5545 39 1 3.7273 5.1314 0.8099 40 1 5.0486 8.9050 2.1919 41 1 8.6994 4.3985 0.7804 42 1 11.1389 8.4645 1.5841 43 1 9.7285 9.4691 1.9963 44 1 12.1384 11.8691 0.5901 45 1 5.5399 4.6597 -0.7668 46 1 7.1193 4.1279 -0.1404 47 1 6.1051 2.0263 0.6706 48 1 5.8119 2.2237 -1.0743 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065534371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = 87.661298 kcal Electronic energy + Delta-G solvation = -31805.496886 eV Core-core repulsion = 27510.977652 eV Total energy + Delta-G solvation = -4294.519234 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.181 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.09481 -41.14025 -40.35160 -39.38482 -36.93532 -35.75547 -35.47867 -33.96627 -33.24810 -32.07510 -31.56181 -30.02055 -29.19362 -27.68576 -25.85544 -25.60179 -24.82371 -24.29554 -23.60675 -21.74290 -21.44029 -20.94477 -19.17612 -18.84327 -18.78226 -18.16688 -17.92168 -17.10618 -16.80606 -16.71435 -16.55673 -16.13935 -15.91857 -15.79309 -15.59230 -15.33206 -15.16811 -15.07403 -14.89166 -14.57383 -14.11786 -14.01981 -13.85984 -13.73275 -13.14644 -13.07133 -13.03527 -12.79244 -12.77503 -12.54442 -12.40405 -12.33719 -12.26064 -12.13700 -11.99011 -11.78416 -11.61789 -10.80810 -10.77416 -10.63367 -10.24626 -10.04791 -9.85665 -9.39916 -9.26204 -8.37400 -6.54180 -0.33633 0.28587 1.27702 1.34872 1.35769 1.47710 1.51700 1.72679 2.19157 2.23653 2.30606 2.81209 2.92545 2.98635 3.10791 3.24997 3.57755 3.61210 3.80363 3.87931 3.98735 4.06709 4.19067 4.22729 4.29039 4.36886 4.45957 4.52230 4.54563 4.57316 4.67238 4.78801 4.81432 4.85056 4.90850 4.91079 4.94528 4.99988 5.14835 5.35039 5.42934 5.47197 5.52730 5.75077 5.78784 5.79612 5.96748 6.03166 6.17930 6.50512 6.59920 6.67680 7.14766 7.23662 7.39179 8.70548 Molecular weight = 359.18amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.001975 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.066499 B =14171.032528 C =14341.250841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.726 5.726 3 C 0.503 3.497 4 O -0.571 6.571 5 C 0.041 3.959 6 N -0.546 5.546 7 C 0.066 3.934 8 C 0.077 3.923 9 N -0.461 5.461 10 C 0.443 3.557 11 N -0.596 5.596 12 C 0.360 3.640 13 N -0.580 5.580 14 C 0.327 3.673 15 C -0.306 4.306 16 C 0.103 3.897 17 N -0.275 5.275 18 N -0.363 5.363 19 C 0.284 3.716 20 C -0.553 4.553 21 H 0.047 0.953 22 C 0.020 3.980 23 N -0.918 5.918 24 Si 0.975 3.025 25 H -0.271 1.271 26 H -0.268 1.268 27 H -0.271 1.271 28 C 0.056 3.944 29 C 0.066 3.934 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.419 0.581 34 H 0.134 0.866 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.232 0.768 41 H 0.241 0.759 42 H 0.035 0.965 43 H 0.033 0.967 44 H 0.274 0.726 45 H 0.043 0.957 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.456 -28.817 -0.827 34.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.380 5.380 3 C 0.289 3.711 4 O -0.449 6.449 5 C -0.089 4.089 6 N -0.272 5.272 7 C -0.063 4.063 8 C -0.050 4.050 9 N -0.178 5.178 10 C 0.192 3.808 11 N -0.322 5.322 12 C 0.067 3.933 13 N -0.304 5.304 14 C 0.079 3.921 15 C -0.322 4.322 16 C -0.092 4.092 17 N -0.089 5.089 18 N -0.150 5.150 19 C 0.165 3.835 20 C -0.591 4.591 21 H 0.065 0.935 22 C -0.181 4.181 23 N -0.556 5.556 24 Si 0.798 3.202 25 H -0.196 1.196 26 H -0.193 1.193 27 H -0.195 1.195 28 C -0.069 4.069 29 C -0.061 4.061 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.256 0.744 34 H 0.152 0.848 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.248 0.752 41 H 0.257 0.743 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.123 0.877 47 H 0.086 0.914 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.900 -27.000 -0.757 32.967 hybrid contribution 0.172 0.228 -0.351 0.452 sum -18.728 -26.772 -1.108 32.692 Atomic orbital electron populations 1.21585 0.79360 1.03921 1.01011 1.45744 1.08072 1.08832 1.75341 1.21135 0.91106 0.83586 0.75240 1.90720 1.71148 1.33049 1.50020 1.22036 0.90621 0.90245 1.06014 1.61747 1.14646 1.20312 1.30509 1.22179 1.01320 0.93419 0.89342 1.22019 0.83316 0.97146 1.02477 1.58892 1.17061 1.12126 1.29748 1.19686 0.86864 0.89088 0.85142 1.68496 1.37350 1.01136 1.25180 1.25291 0.88645 0.92206 0.87140 1.67548 1.02878 1.37532 1.22481 1.19419 0.87228 0.91240 0.94190 1.19798 0.96261 0.95155 1.20985 1.24351 0.86678 1.01146 0.97032 1.76922 1.25029 0.87786 1.19213 1.49147 1.03718 1.07355 1.54781 1.19176 0.88518 0.78004 0.97811 1.21377 1.31242 1.11567 0.94918 0.93491 1.25793 0.93921 0.96543 1.01818 1.70014 1.30523 1.22098 1.33001 0.85307 0.78255 0.78362 0.78254 1.19609 1.19265 1.19538 1.22600 1.02713 0.96707 0.84926 1.22263 0.86091 0.93703 1.04081 0.93644 0.93731 0.87295 0.74389 0.84839 0.88985 0.92925 0.89857 0.89536 0.93763 0.75161 0.74346 0.94738 0.94927 0.91675 0.93898 0.87677 0.91364 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 127.77 1.37 2.00 16 2 N -0.73 -5.12 5.71 -484.54 -2.77 -7.88 16 3 C 0.50 7.12 7.39 87.65 0.65 7.76 16 4 O -0.57 -14.35 14.68 -3.04 -0.04 -14.39 16 5 C 0.04 0.34 5.45 85.55 0.47 0.81 16 6 N -0.55 -8.33 4.40 -900.27 -3.96 -12.29 16 7 C 0.07 1.19 5.27 86.31 0.45 1.64 16 8 C 0.08 1.79 4.80 86.31 0.41 2.20 16 9 N -0.46 -11.05 4.73 -700.16 -3.31 -14.36 16 10 C 0.44 14.05 6.43 133.64 0.86 14.91 16 11 N -0.60 -19.59 8.87 -197.01 -1.75 -21.33 16 12 C 0.36 12.43 12.24 180.87 2.21 14.64 16 13 N -0.58 -25.56 10.47 -198.11 -2.07 -27.63 16 14 C 0.33 14.97 8.04 134.15 1.08 16.05 16 15 C -0.31 -11.20 5.75 -21.29 -0.12 -11.32 16 16 C 0.10 3.38 10.74 85.65 0.92 4.30 16 17 N -0.27 -11.86 12.45 -56.45 -0.70 -12.56 16 18 N -0.36 -18.18 3.63 -348.94 -1.27 -19.44 16 19 C 0.28 16.09 6.19 85.63 0.53 16.62 16 20 C -0.55 -32.86 9.39 25.60 0.24 -32.62 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.16 5.46 84.66 0.46 1.62 16 23 N -0.92 -54.49 13.29 21.45 0.28 -54.20 16 24 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 C 0.06 1.07 5.36 86.31 0.46 1.53 16 29 C 0.07 0.77 5.61 86.31 0.48 1.26 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.42 -0.25 8.83 -92.71 -0.82 -1.07 16 34 H 0.13 0.42 8.02 -2.38 -0.02 0.40 16 35 H 0.09 0.31 8.12 -2.39 -0.02 0.29 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.78 6.09 -2.39 -0.01 1.76 16 38 H 0.09 2.10 7.84 -2.39 -0.02 2.08 16 39 H 0.04 1.23 8.08 -2.39 -0.02 1.21 16 40 H 0.23 5.89 8.06 -2.91 -0.02 5.87 16 41 H 0.24 4.87 6.85 -2.91 -0.02 4.85 16 42 H 0.03 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.03 1.97 8.14 -2.39 -0.02 1.96 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.11 1.82 5.09 -2.39 -0.01 1.81 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 48 H 0.12 0.82 8.07 -2.38 -0.02 0.80 16 Total: -1.00 -84.38 394.20 -2.90 -87.28 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.19 Total: 8.35 kcal Atomic # 6 Polarization: 30.93 SS G_CDS: 10.48 Total: 41.41 kcal Atomic # 7 Polarization: -154.16 SS G_CDS: -15.55 Total: -169.71 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.04 Total: -14.39 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -84.38 -2.90 -87.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.946 kcal (2) G-P(sol) polarization free energy of solvation -84.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds