Wall clock time and date at job start Tue Mar 31 2020 05:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99802 * 2 1 4 4 H 1.48499 * 109.47303 * 270.00027 * 3 2 1 5 5 H 1.48504 * 109.47147 * 29.99915 * 3 2 1 6 6 H 1.48503 * 109.47032 * 150.00102 * 3 2 1 7 7 C 1.37878 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99289 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00123 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47009 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.87305 * 269.99983 * 10 9 7 12 12 C 1.30249 * 109.69219 * 180.02562 * 11 10 9 13 13 C 1.41176 * 108.47158 * 359.76231 * 12 11 10 14 14 C 1.36313 * 125.87029 * 89.99661 * 10 9 7 15 15 N 1.33198 * 134.62224 * 0.02562 * 14 10 9 16 16 C 1.31501 * 120.68620 * 179.97438 * 15 14 10 17 17 N 1.32118 * 122.64849 * 359.97438 * 16 15 14 18 18 C 1.32865 * 121.19457 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81696 * 179.97438 * 18 17 16 20 20 C 1.47907 * 111.00013 * 127.97722 * 19 18 17 21 21 C 1.50796 * 108.49575 * 153.76257 * 20 19 18 22 22 C 1.53698 * 112.09396 * 92.55688 * 21 20 19 23 23 N 1.48069 * 112.47185 * 318.56044 * 22 21 20 24 24 C 1.46895 * 110.99922 * 192.19170 * 23 22 21 25 25 C 1.50699 * 109.47110 * 66.20647 * 24 23 22 26 26 N 1.34776 * 120.00298 * 185.63487 * 25 24 23 27 27 O 1.21283 * 120.00294 * 5.63358 * 25 24 23 28 28 C 1.44639 * 113.77850 * 318.31213 * 23 22 21 29 29 C 1.40015 * 110.99777 * 0.02562 * 19 18 17 30 30 H 0.96995 * 120.00101 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46981 * 60.00119 * 9 7 2 32 32 H 1.09003 * 109.46899 * 300.00230 * 9 7 2 33 33 H 1.08001 * 125.76356 * 180.02562 * 12 11 10 34 34 H 1.08004 * 118.67541 * 179.97438 * 16 15 14 35 35 H 1.09004 * 109.63485 * 273.47079 * 20 19 18 36 36 H 1.09004 * 109.63101 * 34.06239 * 20 19 18 37 37 H 1.08992 * 108.95926 * 213.23673 * 21 20 19 38 38 H 1.09006 * 108.95506 * 331.97731 * 21 20 19 39 39 H 1.08997 * 108.88186 * 79.33420 * 22 21 20 40 40 H 1.09005 * 108.87964 * 197.88310 * 22 21 20 41 41 H 1.09000 * 109.46786 * 186.20546 * 24 23 22 42 42 H 1.08994 * 109.47370 * 306.20268 * 24 23 22 43 43 H 0.97009 * 119.99640 * 0.02562 * 26 25 24 44 44 H 0.97000 * 120.00579 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.65947 * 334.49105 * 28 23 22 46 46 H 1.09000 * 109.52248 * 214.09366 * 28 23 22 47 47 H 1.08996 * 108.96314 * 308.76482 * 29 19 18 48 48 H 1.08999 * 108.96328 * 67.51543 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7365 -4.2365 -1.1355 12 6 3.5489 -5.1876 -0.7725 13 6 3.5895 -5.2272 0.6381 14 6 2.7222 -4.2197 1.1041 15 7 2.5790 -4.0527 2.4178 16 6 3.2315 -4.8164 3.2664 17 7 4.0515 -5.7762 2.8767 18 6 4.2611 -6.0210 1.5877 19 7 5.1204 -7.0260 1.1890 20 6 4.4636 -7.9324 0.2222 21 6 5.5270 -8.5614 -0.6424 22 6 6.0079 -9.9082 -0.0792 23 7 6.1750 -9.8793 1.3917 24 6 6.9009 -11.0665 1.8625 25 6 8.3152 -11.0291 1.3436 26 7 9.1382 -12.0755 1.5540 27 8 8.7130 -10.0574 0.7365 28 6 6.7883 -8.6660 1.8853 29 6 5.6771 -7.6785 2.2956 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 4.1018 -5.8339 -1.4383 34 1 3.0914 -4.6524 4.3247 35 1 3.9210 -8.7102 0.7596 36 1 3.7732 -7.3644 -0.4015 37 1 5.1228 -8.7196 -1.6421 38 1 6.3773 -7.8826 -0.7080 39 1 5.2806 -10.6781 -0.3366 40 1 6.9647 -10.1604 -0.5367 41 1 6.9138 -11.0760 2.9523 42 1 6.4035 -11.9650 1.4973 43 1 8.8199 -12.8529 2.0392 44 1 10.0484 -12.0516 1.2197 45 1 7.4020 -8.2205 1.1023 46 1 7.4090 -8.8976 2.7509 47 1 6.0973 -6.9338 2.9715 48 1 4.8913 -8.2257 2.8165 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065534635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:39 Heat of formation + Delta-G solvation = 114.232372 kcal Electronic energy + Delta-G solvation = -32417.269944 eV Core-core repulsion = 28123.902919 eV Total energy + Delta-G solvation = -4293.367025 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.181 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.68770 -40.64441 -39.36093 -38.06243 -36.23840 -34.17016 -33.77577 -33.13567 -32.31945 -31.26692 -30.44612 -28.84920 -27.27364 -26.74075 -25.52279 -23.63781 -23.56451 -22.59896 -21.39111 -21.10841 -20.10487 -20.04311 -17.98236 -17.53838 -17.38765 -17.23671 -16.68138 -16.49411 -16.31466 -15.66347 -15.38622 -14.97569 -14.93955 -14.73566 -14.56385 -14.14351 -13.85079 -13.74619 -13.53626 -13.36216 -13.11269 -12.83809 -12.15569 -12.03166 -11.96893 -11.71362 -11.51436 -11.44160 -11.16949 -11.12811 -10.98704 -10.89527 -10.75139 -10.73509 -10.61921 -10.26547 -10.13427 -10.11619 -9.76218 -9.16620 -8.72995 -8.58457 -8.49149 -8.22496 -7.77341 -6.20728 -4.27086 1.12544 1.83871 2.14931 2.95166 3.04019 3.06856 3.26147 3.31556 3.37990 3.43411 3.52771 4.27842 4.35104 4.46573 4.52977 4.57869 4.67410 4.72382 4.87155 4.91152 4.95043 5.09733 5.11839 5.14884 5.17072 5.21279 5.44487 5.47136 5.53589 5.59508 5.67043 5.71121 5.83116 5.90847 6.01854 6.16864 6.27278 6.38731 6.55673 6.63014 6.76899 6.86669 6.91630 7.03608 7.10254 7.24414 7.42001 7.69411 7.77598 7.85116 7.92079 8.19864 8.69542 8.78542 9.37958 10.87480 Molecular weight = 359.18amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.002117 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.368430 B =13223.874677 C =13442.076156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.237 5.237 12 C 0.069 3.931 13 C -0.300 4.300 14 C 0.352 3.648 15 N -0.537 5.537 16 C 0.351 3.649 17 N -0.600 5.600 18 C 0.437 3.563 19 N -0.473 5.473 20 C 0.067 3.933 21 C -0.122 4.122 22 C 0.054 3.946 23 N -0.527 5.527 24 C 0.038 3.962 25 C 0.480 3.520 26 N -0.858 5.858 27 O -0.537 6.537 28 C 0.064 3.936 29 C 0.076 3.924 30 H 0.268 0.732 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.187 0.813 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.401 0.599 44 H 0.398 0.602 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.203 -28.280 4.539 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.119 5.119 11 N -0.053 5.053 12 C -0.126 4.126 13 C -0.317 4.317 14 C 0.104 3.896 15 N -0.260 5.260 16 C 0.057 3.943 17 N -0.326 5.326 18 C 0.188 3.812 19 N -0.189 5.189 20 C -0.057 4.057 21 C -0.161 4.161 22 C -0.073 4.073 23 N -0.250 5.250 24 C -0.094 4.094 25 C 0.263 3.737 26 N -0.422 5.422 27 O -0.413 6.413 28 C -0.065 4.065 29 C -0.053 4.053 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.204 0.796 34 H 0.212 0.788 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.229 0.771 44 H 0.228 0.772 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.156 -26.263 3.951 29.638 hybrid contribution 1.589 -0.210 0.042 1.604 sum 14.745 -26.473 3.993 30.564 Atomic orbital electron populations 1.69918 1.05989 1.27631 1.49371 1.24899 0.94993 0.99370 0.94441 0.86336 0.79725 0.82183 0.78311 1.20327 1.20811 1.19751 1.21248 0.93574 0.89657 1.52705 0.92031 1.19807 0.85671 0.79840 1.00017 1.49489 1.35900 1.27762 0.98729 1.76967 1.11237 1.07698 1.09372 1.23546 0.98800 0.97762 0.92496 1.19652 1.10271 1.06253 0.95490 1.19022 0.91677 0.90392 0.88550 1.67514 1.28659 1.29654 1.00134 1.24494 0.85981 0.84550 0.99269 1.68320 1.24221 1.24419 1.15626 1.19381 0.84383 0.89802 0.87671 1.55969 1.30570 1.13994 1.18388 1.22170 0.95819 0.94215 0.93529 1.21464 0.99727 0.96176 0.98685 1.22518 1.00540 0.98086 0.86107 1.61222 1.49558 1.01812 1.12411 1.22389 0.88345 0.96424 1.02228 1.22277 0.89540 0.82482 0.79357 1.44082 1.16678 1.20717 1.60753 1.90787 1.77061 1.32644 1.40793 1.22023 0.94923 0.89284 1.00228 1.21022 0.97235 0.96311 0.90741 0.92270 0.92727 0.92261 0.79578 0.78794 0.91591 0.89165 0.90119 0.90125 0.91220 0.93078 0.87337 0.87853 0.77089 0.77160 0.91061 0.91162 0.89302 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -15.39 9.39 -34.44 -0.32 -15.72 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.26 7.08 6.19 -5.19 -0.03 7.05 16 10 N -0.33 -8.03 3.63 -61.64 -0.22 -8.25 16 11 N -0.24 -5.14 12.45 30.80 0.38 -4.76 16 12 C 0.07 1.22 10.41 -17.11 -0.18 1.04 16 13 C -0.30 -5.65 5.61 -106.81 -0.60 -6.25 16 14 C 0.35 7.89 8.04 -156.23 -1.26 6.63 16 15 N -0.54 -11.48 10.47 -13.97 -0.15 -11.62 16 16 C 0.35 6.02 12.24 -92.13 -1.13 4.89 16 17 N -0.60 -9.88 8.72 -13.62 -0.12 -10.00 16 18 C 0.44 7.20 6.44 -154.85 -1.00 6.20 16 19 N -0.47 -6.24 4.10 -177.65 -0.73 -6.97 16 20 C 0.07 0.73 5.01 -4.37 -0.02 0.71 16 21 C -0.12 -1.10 5.37 -27.47 -0.15 -1.25 16 22 C 0.05 0.45 5.16 -2.82 -0.01 0.43 16 23 N -0.53 -4.30 4.11 -235.69 -0.97 -5.27 16 24 C 0.04 0.20 5.59 -4.98 -0.03 0.17 16 25 C 0.48 3.25 7.21 -10.99 -0.08 3.17 16 26 N -0.86 -2.70 8.87 31.22 0.28 -2.42 16 27 O -0.54 -6.08 13.53 5.56 0.08 -6.00 16 28 C 0.06 0.64 4.00 -4.40 -0.02 0.62 16 29 C 0.08 0.89 4.34 -6.74 -0.03 0.86 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.05 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.19 2.44 7.13 -52.49 -0.37 2.07 16 34 H 0.20 2.52 8.06 -52.48 -0.42 2.10 16 35 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 36 H 0.09 1.04 4.61 -51.93 -0.24 0.80 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.87 7.22 -51.93 -0.37 0.49 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.48 5.96 -51.93 -0.31 0.17 16 41 H 0.11 0.40 8.04 -51.93 -0.42 -0.02 16 42 H 0.10 0.32 8.12 -51.93 -0.42 -0.11 16 43 H 0.40 0.00 8.83 -40.82 -0.36 -0.36 16 44 H 0.40 1.21 8.93 -40.82 -0.36 0.84 16 45 H 0.07 0.88 5.99 -51.93 -0.31 0.57 16 46 H 0.07 0.64 7.43 -51.93 -0.39 0.26 16 47 H 0.09 1.15 7.46 -51.93 -0.39 0.76 16 48 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -35.74 382.57 -11.33 -47.07 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.42 Total: 0.35 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -4.95 Total: 10.34 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -0.79 Total: -74.50 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: 0.08 Total: -6.00 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.74 -11.33 -47.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.305 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds